Csa4G280680 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G280680
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 10963426 .. 10963746 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGATTTCTTCTTATTTTGGTTTTATGTCTGTTCTTGTTGATCGCGTTGTGGAATATCGAATTTTTAATGAAAATAGAAATCCATTTGGTTTCTACGCTTTATGTCTTTCTGCTCTAGTCGACACTGTGAATACAATACCCACCATTCACTTGAATCAAATTCAGCTTCCAAGTTTTGTTATCCATTTTTACTGTTATGTATTAGCTCGTGCGTCCCAAGTATTCGACGAAATGCCTAAGTGGGAAGTAAGCTTTGAGACGACAAATTGTCTGTTTGCACTGATGAAGAGAACCACGAGAGGCTTCTGGATCATTTAG

mRNA sequence

ATGTTGATTTCTTCTTATTTTGGTTTTATGTCTGTTCTTGTTGATCGCGTTGTGGAATATCGAATTTTTAATGAAAATAGAAATCCATTTGGTTTCTACGCTTTATGTCTTTCTGCTCTAGTCGACACTGTGAATACAATACCCACCATTCACTTGAATCAAATTCAGCTTCCAAGTTTTGTTATCCATTTTTACTGTTATGTATTAGCTCGTGCGTCCCAAGTATTCGACGAAATGCCTAAGTGGGAAGTAAGCTTTGAGACGACAAATTGTCTGTTTGCACTGATGAAGAGAACCACGAGAGGCTTCTGGATCATTTAG

Coding sequence (CDS)

ATGTTGATTTCTTCTTATTTTGGTTTTATGTCTGTTCTTGTTGATCGCGTTGTGGAATATCGAATTTTTAATGAAAATAGAAATCCATTTGGTTTCTACGCTTTATGTCTTTCTGCTCTAGTCGACACTGTGAATACAATACCCACCATTCACTTGAATCAAATTCAGCTTCCAAGTTTTGTTATCCATTTTTACTGTTATGTATTAGCTCGTGCGTCCCAAGTATTCGACGAAATGCCTAAGTGGGAAGTAAGCTTTGAGACGACAAATTGTCTGTTTGCACTGATGAAGAGAACCACGAGAGGCTTCTGGATCATTTAG

Protein sequence

MLISSYFGFMSVLVDRVVEYRIFNENRNPFGFYALCLSALVDTVNTIPTIHLNQIQLPSFVIHFYCYVLARASQVFDEMPKWEVSFETTNCLFALMKRTTRGFWII*
Homology
[Close]
BLAST of Csa4G280680 vs. TrEMBL
Match: A0A0A0L1S7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G280680 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 8.5e-55
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1 

Query: 1   MLISSYFGFMSVLVDRVVEYRIFNENRNPFGFYALCLSALVDTVNTIPTIHLNQIQLPSF 60
           MLISSYFGFMSVLVDRVVEYRIFNENRNPFGFYALCLSALVDTVNTIPTIHLNQIQLPSF
Sbjct: 1   MLISSYFGFMSVLVDRVVEYRIFNENRNPFGFYALCLSALVDTVNTIPTIHLNQIQLPSF 60

Query: 61  VIHFYCYVLARASQVFDEMPKWEVSFETTNCLFALMKRTTRGFWII 107
           VIHFYCYVLARASQVFDEMPKWEVSFETTNCLFALMKRTTRGFWII
Sbjct: 61  VIHFYCYVLARASQVFDEMPKWEVSFETTNCLFALMKRTTRGFWII 106

[Close]
BLAST of Csa4G280680 vs. NCBI nr
Match: gi|700198933|gb|KGN54091.1| (hypothetical protein Csa_4G280680 [Cucumis sativus])

HSP 1 Score: 220.7 bits (561), Expect = 1.2e-54
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1 

Query: 1   MLISSYFGFMSVLVDRVVEYRIFNENRNPFGFYALCLSALVDTVNTIPTIHLNQIQLPSF 60
           MLISSYFGFMSVLVDRVVEYRIFNENRNPFGFYALCLSALVDTVNTIPTIHLNQIQLPSF
Sbjct: 1   MLISSYFGFMSVLVDRVVEYRIFNENRNPFGFYALCLSALVDTVNTIPTIHLNQIQLPSF 60

Query: 61  VIHFYCYVLARASQVFDEMPKWEVSFETTNCLFALMKRTTRGFWII 107
           VIHFYCYVLARASQVFDEMPKWEVSFETTNCLFALMKRTTRGFWII
Sbjct: 61  VIHFYCYVLARASQVFDEMPKWEVSFETTNCLFALMKRTTRGFWII 106

The following BLAST results are available for this feature:
BLAST of Csa4G280680 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L1S7_CUCSA8.5e-55100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G280680 PE=4 SV=1[more]
BLAST of Csa4G280680 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198933|gb|KGN54091.1|1.2e-54100.00hypothetical protein Csa_4G280680 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU096964cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G280680.1Csa4G280680.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU096964CU096964transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa4G280680CSPI04G13190Wild cucumber (PI 183967)cpicuB181
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G280680Watermelon (97103) v2cuwmbB287
Csa4G280680Wax gourdcuwgoB390
Csa4G280680Cucumber (Gy14) v1cgycuB220
Csa4G280680Cucumber (Gy14) v1cgycuB345
Csa4G280680Cucurbita maxima (Rimu)cmacuB549
Csa4G280680Cucurbita maxima (Rimu)cmacuB605
Csa4G280680Cucurbita moschata (Rifu)cmocuB538
Csa4G280680Cucurbita moschata (Rifu)cmocuB596
Csa4G280680Melon (DHL92) v3.5.1cumeB295
Csa4G280680Watermelon (Charleston Gray)cuwcgB292
Csa4G280680Watermelon (97103) v1cuwmB347
Csa4G280680Cucurbita pepo (Zucchini)cpecuB278
Csa4G280680Cucurbita pepo (Zucchini)cpecuB728
Csa4G280680Bottle gourd (USVL1VR-Ls)culsiB246
Csa4G280680Cucumber (Gy14) v2cgybcuB167
Csa4G280680Melon (DHL92) v3.6.1cumedB279
Csa4G280680Silver-seed gourdcarcuB0552
Csa4G280680Silver-seed gourdcarcuB0935