CSPI04G13190 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G13190
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr4 : 11318737 .. 11319710 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGATTTCTTCTTATTTTGGTTTTATGTCTGTTCTTGTTGATCGTGTTATGGAATATCGAATTTTTAATGAAAATAGAAATCCATTTGGTTTCTACGCTTTATGTCTTTCTGCTCTAGTCGACACTGTGAATACAATACCCACCATTCACTTGAATCAAATTCAGCTTCCAAGTTTTGTTATCCATTTTTACTGTTATGTATTAGCTCGTGCGTCCCAAGTATTCGACGAAATGCCTAAGTGGGAAGTAAGCTTTGAGACGACAAATTGTCTGTTTGCACTGATGAAGAGAACCACGAGAGGCTTCTGGATCATTTAGTGCTGAGTCCAATCTCCATAGCCAAATAATAGAAGATACAGGTACGCCGTACGCTCACACTATCTATATATCCTCTTGCTTTCACTCGGCTAATTTCAAGATGCAAAATTTAAGGCGTTTGTTTGTTTTTACACGGATGAATTTCCTTTACTTTGAAATGGATTTACAGTTTGGTTCAAGCCAAGCGTCCAATTGTCCATGTTTAGAACTCTACTACACAGTTGTTCACCGAACAAAAATCCTATTCAATTAAGGTTGTTTGATGCAAGCTGATCTAAGTTGATGTAATACAAGTGAGTTCAATGACAGAGGTCAGCCAAATTTAGTTGATCTAAGTCACTTGAGTTCAATCATATGAGGAACTTCGAGGATGGCACTTGAGTAGGAGAGATTCGGTCATAAGGGCTCGGTAAGCACAACCACCTTTTGTGTGGGGATGCATGTACGTTTACTCTCACGATACATTGTCAATGACTGTCCATAAACAGACCAAAGTGAAAGGTCTTGTAAAGATGCACTCATGGCTGCAACTGTTAGGTGTAAACAAAGTCCTGTATCGACTAGGAACGAGAATGATCATGGGTATATAAATATGAACAATTATCTTCATTGGTATAACATACCATTTAGGTGGTTCAAGAGGCAAAGTCACG

mRNA sequence

ATGTTGATTTCTTCTTATTTTGGTTTTATGTCTGTTCTTGTTGATCGTGTTATGGAATATCGAATTTTTAATGAAAATAGAAATCCATTTGGTTTCTACGCTTTATGTCTTTCTGCTCTAGTCGACACTGTGAATACAATACCCACCATTCACTTGAATCAAATTCAGCTTCCAAGTTTTGTTATCCATTTTTACTGTTATGTATTAGCTCGTGCGTCCCAAGTATTCGACGAAATGCCTAAGTGGGAAGTAAGCTTTGAGACGACAAATTGTCTGTTTGCACTGATGAAGAGAACCACGAGAGGCTTCTGGATCATTTAG

Coding sequence (CDS)

ATGTTGATTTCTTCTTATTTTGGTTTTATGTCTGTTCTTGTTGATCGTGTTATGGAATATCGAATTTTTAATGAAAATAGAAATCCATTTGGTTTCTACGCTTTATGTCTTTCTGCTCTAGTCGACACTGTGAATACAATACCCACCATTCACTTGAATCAAATTCAGCTTCCAAGTTTTGTTATCCATTTTTACTGTTATGTATTAGCTCGTGCGTCCCAAGTATTCGACGAAATGCCTAAGTGGGAAGTAAGCTTTGAGACGACAAATTGTCTGTTTGCACTGATGAAGAGAACCACGAGAGGCTTCTGGATCATTTAG
Homology
[Close]
BLAST of CSPI04G13190 vs. TrEMBL
Match: A0A0A0L1S7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G280680 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.1e-54
Identity = 105/106 (99.06%), Postives = 106/106 (100.00%), Query Frame = 1 

Query: 1   MLISSYFGFMSVLVDRVMEYRIFNENRNPFGFYALCLSALVDTVNTIPTIHLNQIQLPSF 60
           MLISSYFGFMSVLVDRV+EYRIFNENRNPFGFYALCLSALVDTVNTIPTIHLNQIQLPSF
Sbjct: 1   MLISSYFGFMSVLVDRVVEYRIFNENRNPFGFYALCLSALVDTVNTIPTIHLNQIQLPSF 60

Query: 61  VIHFYCYVLARASQVFDEMPKWEVSFETTNCLFALMKRTTRGFWII 107
           VIHFYCYVLARASQVFDEMPKWEVSFETTNCLFALMKRTTRGFWII
Sbjct: 61  VIHFYCYVLARASQVFDEMPKWEVSFETTNCLFALMKRTTRGFWII 106

[Close]
BLAST of CSPI04G13190 vs. NCBI nr
Match: gi|700198933|gb|KGN54091.1| (hypothetical protein Csa_4G280680 [Cucumis sativus])

HSP 1 Score: 220.3 bits (560), Expect = 1.6e-54
Identity = 105/106 (99.06%), Postives = 106/106 (100.00%), Query Frame = 1 

Query: 1   MLISSYFGFMSVLVDRVMEYRIFNENRNPFGFYALCLSALVDTVNTIPTIHLNQIQLPSF 60
           MLISSYFGFMSVLVDRV+EYRIFNENRNPFGFYALCLSALVDTVNTIPTIHLNQIQLPSF
Sbjct: 1   MLISSYFGFMSVLVDRVVEYRIFNENRNPFGFYALCLSALVDTVNTIPTIHLNQIQLPSF 60

Query: 61  VIHFYCYVLARASQVFDEMPKWEVSFETTNCLFALMKRTTRGFWII 107
           VIHFYCYVLARASQVFDEMPKWEVSFETTNCLFALMKRTTRGFWII
Sbjct: 61  VIHFYCYVLARASQVFDEMPKWEVSFETTNCLFALMKRTTRGFWII 106

The following BLAST results are available for this feature:
BLAST of CSPI04G13190 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G13190 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L1S7_CUCSA1.1e-5499.06Uncharacterized protein OS=Cucumis sativus GN=Csa_4G280680 PE=4 SV=1[more]
BLAST of CSPI04G13190 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI04G13190 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198933|gb|KGN54091.1|1.6e-5499.06hypothetical protein Csa_4G280680 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G13190.1CSPI04G13190.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI04G13190Csa4G280680Cucumber (Chinese Long) v2cpicuB181
CSPI04G13190CsaV3_4G023530Cucumber (Chinese Long) v3cpicucB212
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI04G13190Cucurbita maxima (Rimu)cmacpiB554
CSPI04G13190Cucurbita maxima (Rimu)cmacpiB612
CSPI04G13190Cucurbita moschata (Rifu)cmocpiB543
CSPI04G13190Cucurbita moschata (Rifu)cmocpiB603
CSPI04G13190Melon (DHL92) v3.5.1cpimeB289
CSPI04G13190Watermelon (Charleston Gray)cpiwcgB303
CSPI04G13190Watermelon (97103) v1cpiwmB353
CSPI04G13190Cucurbita pepo (Zucchini)cpecpiB282
CSPI04G13190Cucurbita pepo (Zucchini)cpecpiB730
CSPI04G13190Bottle gourd (USVL1VR-Ls)cpilsiB245
CSPI04G13190Melon (DHL92) v3.6.1cpimedB283
CSPI04G13190Cucumber (Gy14) v2cgybcpiB170
CSPI04G13190Silver-seed gourdcarcpiB0559
CSPI04G13190Silver-seed gourdcarcpiB0958
CSPI04G13190Watermelon (97103) v2cpiwmbB294
CSPI04G13190Wax gourdcpiwgoB394
CSPI04G13190Cucumber (Gy14) v1cgycpiB225
CSPI04G13190Cucumber (Gy14) v1cgycpiB361