Csa4G192130 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G192130
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 9489083 .. 9489424 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTCCTCCTCATCTCTTTTCAATTTTCCATCCATTTTCTTCCCCAATTATAAACCCTAATCTCAATTTCACTCATACATTCCCTCTTCCTCTACGCCCTCAAACTCTACATTTCATTTCCAATTCTTCTTCTTCTCCACCACCCCCACCTTCTCCTCCTCCACCCGATCCCATTCCGGAGAAGAGGTCCATCGTCGTAGCTACTGGAGAGCTCGTCGTAGCCACCGGGGAGCTCTTTTTGGGTATGCCTGTGAGGTTGATTAAGCACTCTTCCGACCAAACCTCCAACTTCGTTTCTATGTTTGATAATCGCAGTGGGAACGTATATATGTATGTTTGA

mRNA sequence

ATGACTCCTCCTCATCTCTTTTCAATTTTCCATCCATTTTCTTCCCCAATTATAAACCCTAATCTCAATTTCACTCATACATTCCCTCTTCCTCTACGCCCTCAAACTCTACATTTCATTTCCAATTCTTCTTCTTCTCCACCACCCCCACCTTCTCCTCCTCCACCCGATCCCATTCCGGAGAAGAGGTCCATCGTCGTAGCTACTGGAGAGCTCGTCGTAGCCACCGGGGAGCTCTTTTTGGGTATGCCTGTGAGGTTGATTAAGCACTCTTCCGACCAAACCTCCAACTTCGTTTCTATGTTTGATAATCGCAGTGGGAACGTATATATGTATGTTTGA

Coding sequence (CDS)

ATGACTCCTCCTCATCTCTTTTCAATTTTCCATCCATTTTCTTCCCCAATTATAAACCCTAATCTCAATTTCACTCATACATTCCCTCTTCCTCTACGCCCTCAAACTCTACATTTCATTTCCAATTCTTCTTCTTCTCCACCACCCCCACCTTCTCCTCCTCCACCCGATCCCATTCCGGAGAAGAGGTCCATCGTCGTAGCTACTGGAGAGCTCGTCGTAGCCACCGGGGAGCTCTTTTTGGGTATGCCTGTGAGGTTGATTAAGCACTCTTCCGACCAAACCTCCAACTTCGTTTCTATGTTTGATAATCGCAGTGGGAACGTATATATGTATGTTTGA

Protein sequence

MTPPHLFSIFHPFSSPIINPNLNFTHTFPLPLRPQTLHFISNSSSSPPPPPSPPPPDPIPEKRSIVVATGELVVATGELFLGMPVRLIKHSSDQTSNFVSMFDNRSGNVYMYV*
Homology
[Close]
BLAST of Csa4G192130 vs. TrEMBL
Match: A0A0A0L1C8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G192130 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 5.5e-60
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 1 

Query: 1   MTPPHLFSIFHPFSSPIINPNLNFTHTFPLPLRPQTLHFISNSSSSPPPPPSPPPPDPIP 60
           MTPPHLFSIFHPFSSPIINPNLNFTHTFPLPLRPQTLHFISNSSSSPPPPPSPPPPDPIP
Sbjct: 1   MTPPHLFSIFHPFSSPIINPNLNFTHTFPLPLRPQTLHFISNSSSSPPPPPSPPPPDPIP 60

Query: 61  EKRSIVVATGELVVATGELFLGMPVRLIKHSSDQTSNFVSMFDNRSGNVYMYV 114
           EKRSIVVATGELVVATGELFLGMPVRLIKHSSDQTSNFVSMFDNRSGNVYMYV
Sbjct: 61  EKRSIVVATGELVVATGELFLGMPVRLIKHSSDQTSNFVSMFDNRSGNVYMYV 113

[Close]
BLAST of Csa4G192130 vs. TrEMBL
Match: A0A0A0L746_CUCSA (Patatin OS=Cucumis sativus GN=Csa_3G214570 PE=3 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 2.4e-39
Identity = 85/108 (78.70%), Postives = 86/108 (79.63%), Query Frame = 1 

Query: 1   MTPPHLFSIFHPFSSPIINPNLNFTHTFPLPLRPQTLHFISNSSSSPPPPPSPPPPDPIP 60
           M PPHL SI HPFSSPI NPNLNFTH F LPLR QTL FISNSSSSPPPPPSPPPPDPIP
Sbjct: 1   MAPPHLSSISHPFSSPITNPNLNFTHRFSLPLRSQTLRFISNSSSSPPPPPSPPPPDPIP 60

Query: 61  EKRSIVVATGELVVATGELFLGMPVRLIKHSSDQTSNFVSMFDNRSGN 109
           EKRS         VATGELFLG+  RLIK SSDQTS  VSMFDNRSGN
Sbjct: 61  EKRS-------FAVATGELFLGLAARLIKRSSDQTSKSVSMFDNRSGN 101

[Close]
BLAST of Csa4G192130 vs. NCBI nr
Match: gi|700198783|gb|KGN53941.1| (hypothetical protein Csa_4G192130 [Cucumis sativus])

HSP 1 Score: 238.0 bits (606), Expect = 7.9e-60
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 1 

Query: 1   MTPPHLFSIFHPFSSPIINPNLNFTHTFPLPLRPQTLHFISNSSSSPPPPPSPPPPDPIP 60
           MTPPHLFSIFHPFSSPIINPNLNFTHTFPLPLRPQTLHFISNSSSSPPPPPSPPPPDPIP
Sbjct: 1   MTPPHLFSIFHPFSSPIINPNLNFTHTFPLPLRPQTLHFISNSSSSPPPPPSPPPPDPIP 60

Query: 61  EKRSIVVATGELVVATGELFLGMPVRLIKHSSDQTSNFVSMFDNRSGNVYMYV 114
           EKRSIVVATGELVVATGELFLGMPVRLIKHSSDQTSNFVSMFDNRSGNVYMYV
Sbjct: 61  EKRSIVVATGELVVATGELFLGMPVRLIKHSSDQTSNFVSMFDNRSGNVYMYV 113

[Close]
BLAST of Csa4G192130 vs. NCBI nr
Match: gi|449464490|ref|XP_004149962.1| (PREDICTED: patatin-like phospholipase domain-containing protein 2 [Cucumis sativus])

HSP 1 Score: 169.5 bits (428), Expect = 3.5e-39
Identity = 85/108 (78.70%), Postives = 86/108 (79.63%), Query Frame = 1 

Query: 1   MTPPHLFSIFHPFSSPIINPNLNFTHTFPLPLRPQTLHFISNSSSSPPPPPSPPPPDPIP 60
           M PPHL SI HPFSSPI NPNLNFTH F LPLR QTL FISNSSSSPPPPPSPPPPDPIP
Sbjct: 1   MAPPHLSSISHPFSSPITNPNLNFTHRFSLPLRSQTLRFISNSSSSPPPPPSPPPPDPIP 60

Query: 61  EKRSIVVATGELVVATGELFLGMPVRLIKHSSDQTSNFVSMFDNRSGN 109
           EKRS         VATGELFLG+  RLIK SSDQTS  VSMFDNRSGN
Sbjct: 61  EKRS-------FAVATGELFLGLAARLIKRSSDQTSKSVSMFDNRSGN 101

[Close]
BLAST of Csa4G192130 vs. NCBI nr
Match: gi|659112152|ref|XP_008456089.1| (PREDICTED: uncharacterized protein LOC103496128 [Cucumis melo])

HSP 1 Score: 161.4 bits (407), Expect = 9.4e-37
Identity = 86/111 (77.48%), Postives = 88/111 (79.28%), Query Frame = 1 

Query: 1   MTPPHLFSIFHPF-SSPIINPNLNFTHTFPLPLRPQTLHFISN--SSSSPPPPPSPPPPD 60
           M PPHL SI HPF SSPI NPNLNFT  FPLPLR QTL FISN  SSSSPPPPPSPPPPD
Sbjct: 1   MAPPHLSSISHPFSSSPITNPNLNFTCRFPLPLRSQTLRFISNSSSSSSPPPPPSPPPPD 60

Query: 61  PIPEKRSIVVATGELVVATGELFLGMPVRLIKHSSDQTSNFVSMFDNRSGN 109
           PIPEKRS       L VATGELFLG+  RLIK SSDQTSN VSMFDNR+GN
Sbjct: 61  PIPEKRS-------LAVATGELFLGLAARLIKRSSDQTSNSVSMFDNRTGN 104

[Close]
BLAST of Csa4G192130 vs. NCBI nr
Match: gi|658008273|ref|XP_008339328.1| (PREDICTED: patatin-like phospholipase domain-containing protein 4 [Malus domestica])

HSP 1 Score: 72.8 bits (177), Expect = 4.4e-10
Identity = 48/114 (42.11%), Postives = 61/114 (53.51%), Query Frame = 1 

Query: 12  PFSSPIINPNLNFTHTFPLPLRPQTL-HFI---------------SNSSSSPPPPPSPPP 71
           PFSSP  NPN N  H +P+PLRP  L H +               S+SSSS PPPP PPP
Sbjct: 38  PFSSPNPNPNPNLLHRYPIPLRPLFLTHSVSPHSXPNSDTNQNSSSSSSSSAPPPPPPPP 97

Query: 72  PDPIPEKRSIVVATGELVVATGELFLGMPVRLIKHSSDQ-----TSNFVSMFDN 105
           P   P K+S         VATGELFLG+  R+IK  +        ++ V+MF++
Sbjct: 98  P---PTKKS-------FAVATGELFLGLASRIIKRRNGDPEGKAAASSVAMFES 141

[Close]
BLAST of Csa4G192130 vs. NCBI nr
Match: gi|596153536|ref|XP_007222791.1| (hypothetical protein PRUPE_ppa006651mg [Prunus persica])

HSP 1 Score: 60.8 bits (146), Expect = 1.7e-06
Identity = 47/121 (38.84%), Postives = 62/121 (51.24%), Query Frame = 1 

Query: 8   SIFHPFSSPIINPNLNFTHTFPLPLRPQTL------HFISNSS-------SSPPPPPSPP 67
           ++F P   P  NPNL   H + +PLR QTL      H   NS        SS PPP SP 
Sbjct: 6   ALFQPQLHPFPNPNL--IHRYTIPLRTQTLTTSSVPHSTPNSETNQTSSPSSAPPPQSPE 65

Query: 68  PPDPIPEKRSIVVATGELVVATGELFLGMPVRLIKHSS----DQTSNFVSMFDNRSGNVY 112
           PP P   K+S  V       ATGELFLG+  R+IK  +     + ++ V+MF++ SG  Y
Sbjct: 66  PPSP---KKSFAV-------ATGELFLGLASRIIKRPNGGPDGKAASSVAMFES-SGKNY 113

The following BLAST results are available for this feature:
BLAST of Csa4G192130 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L1C8_CUCSA5.5e-60100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G192130 PE=4 SV=1[more]
A0A0A0L746_CUCSA2.4e-3978.70Patatin OS=Cucumis sativus GN=Csa_3G214570 PE=3 SV=1[more]
BLAST of Csa4G192130 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198783|gb|KGN53941.1|7.9e-60100.00hypothetical protein Csa_4G192130 [Cucumis sativus][more]
gi|449464490|ref|XP_004149962.1|3.5e-3978.70PREDICTED: patatin-like phospholipase domain-containing protein 2 [Cucumis sativ... [more]
gi|659112152|ref|XP_008456089.1|9.4e-3777.48PREDICTED: uncharacterized protein LOC103496128 [Cucumis melo][more]
gi|658008273|ref|XP_008339328.1|4.4e-1042.11PREDICTED: patatin-like phospholipase domain-containing protein 4 [Malus domesti... [more]
gi|596153536|ref|XP_007222791.1|1.7e-0638.84hypothetical protein PRUPE_ppa006651mg [Prunus persica][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016042 lipid catabolic process
biological_process GO:0006629 lipid metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G192130.1Csa4G192130.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa4G192130CSPI04G11260Wild cucumber (PI 183967)cpicuB183
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G192130Watermelon (97103) v2cuwmbB299
Csa4G192130Wax gourdcuwgoB406
Csa4G192130Cucumber (Gy14) v1cgycuB487
Csa4G192130Cucurbita maxima (Rimu)cmacuB664
Csa4G192130Cucurbita maxima (Rimu)cmacuB860
Csa4G192130Cucurbita moschata (Rifu)cmocuB652
Csa4G192130Cucurbita moschata (Rifu)cmocuB848
Csa4G192130Melon (DHL92) v3.5.1cumeB324
Csa4G192130Watermelon (Charleston Gray)cuwcgB302
Csa4G192130Watermelon (97103) v1cuwmB339
Csa4G192130Cucurbita pepo (Zucchini)cpecuB079
Csa4G192130Cucurbita pepo (Zucchini)cpecuB497
Csa4G192130Bottle gourd (USVL1VR-Ls)culsiB258
Csa4G192130Cucumber (Gy14) v2cgybcuB168
Csa4G192130Melon (DHL92) v3.6.1cumedB311
Csa4G192130Silver-seed gourdcarcuB0310
Csa4G192130Silver-seed gourdcarcuB0651