CSPI04G11260 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G11260
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionPatatin
LocationChr4 : 9552260 .. 9552601 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTCCTCTTCATCTCTTTTCAATTTTCCATCCATTTTCTTCCCCAATTACAAACCCTAATCTCAATTTCACTCATAGATTTCCTCTTCCTCTACACCCTCAAACTCTACATTTCATTTCCAATTCTTCTTCTTCTCCACCACCCCAACCTTCTCCTCCTCCGCCCGATCCCATTCTGGAGAAGAGGTCCATCGTCGTAGCCACTAGAGAGCTCGTCGTAGCCACCGGGGAGCTCTTTTTGGGTATGCCTGTGAGGTTGATTAAGCACTCTTCCGACCAAACCTCCAACTTCGTTTCTATGTTTGATAATCGCAGTGGGAACGTATATATGTATGTTTGA

mRNA sequence

ATGACTCCTCTTCATCTCTTTTCAATTTTCCATCCATTTTCTTCCCCAATTACAAACCCTAATCTCAATTTCACTCATAGATTTCCTCTTCCTCTACACCCTCAAACTCTACATTTCATTTCCAATTCTTCTTCTTCTCCACCACCCCAACCTTCTCCTCCTCCGCCCGATCCCATTCTGGAGAAGAGGTCCATCGTCGTAGCCACTAGAGAGCTCGTCGTAGCCACCGGGGAGCTCTTTTTGGGTATGCCTGTGAGGTTGATTAAGCACTCTTCCGACCAAACCTCCAACTTCGTTTCTATGTTTGATAATCGCAGTGGGAACGTATATATGTATGTTTGA

Coding sequence (CDS)

ATGACTCCTCTTCATCTCTTTTCAATTTTCCATCCATTTTCTTCCCCAATTACAAACCCTAATCTCAATTTCACTCATAGATTTCCTCTTCCTCTACACCCTCAAACTCTACATTTCATTTCCAATTCTTCTTCTTCTCCACCACCCCAACCTTCTCCTCCTCCGCCCGATCCCATTCTGGAGAAGAGGTCCATCGTCGTAGCCACTAGAGAGCTCGTCGTAGCCACCGGGGAGCTCTTTTTGGGTATGCCTGTGAGGTTGATTAAGCACTCTTCCGACCAAACCTCCAACTTCGTTTCTATGTTTGATAATCGCAGTGGGAACGTATATATGTATGTTTGA
Homology
[Close]
BLAST of CSPI04G11260 vs. TrEMBL
Match: A0A0A0L1C8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G192130 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 7.2e-52
Identity = 106/113 (93.81%), Postives = 106/113 (93.81%), Query Frame = 1 

Query: 1   MTPLHLFSIFHPFSSPITNPNLNFTHRFPLPLHPQTLHFISNSSSSPPPQPSPPPPDPIL 60
           MTP HLFSIFHPFSSPI NPNLNFTH FPLPL PQTLHFISNSSSSPPP PSPPPPDPI 
Sbjct: 1   MTPPHLFSIFHPFSSPIINPNLNFTHTFPLPLRPQTLHFISNSSSSPPPPPSPPPPDPIP 60

Query: 61  EKRSIVVATRELVVATGELFLGMPVRLIKHSSDQTSNFVSMFDNRSGNVYMYV 114
           EKRSIVVAT ELVVATGELFLGMPVRLIKHSSDQTSNFVSMFDNRSGNVYMYV
Sbjct: 61  EKRSIVVATGELVVATGELFLGMPVRLIKHSSDQTSNFVSMFDNRSGNVYMYV 113

[Close]
BLAST of CSPI04G11260 vs. TrEMBL
Match: A0A0A0L746_CUCSA (Patatin OS=Cucumis sativus GN=Csa_3G214570 PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 8.0e-35
Identity = 83/108 (76.85%), Postives = 84/108 (77.78%), Query Frame = 1 

Query: 1   MTPLHLFSIFHPFSSPITNPNLNFTHRFPLPLHPQTLHFISNSSSSPPPQPSPPPPDPIL 60
           M P HL SI HPFSSPITNPNLNFTHRF LPL  QTL FISNSSSSPPP PSPPPPDPI 
Sbjct: 1   MAPPHLSSISHPFSSPITNPNLNFTHRFSLPLRSQTLRFISNSSSSPPPPPSPPPPDPIP 60

Query: 61  EKRSIVVATRELVVATGELFLGMPVRLIKHSSDQTSNFVSMFDNRSGN 109
           EKRS  VAT       GELFLG+  RLIK SSDQTS  VSMFDNRSGN
Sbjct: 61  EKRSFAVAT-------GELFLGLAARLIKRSSDQTSKSVSMFDNRSGN 101

[Close]
BLAST of CSPI04G11260 vs. NCBI nr
Match: gi|700198783|gb|KGN53941.1| (hypothetical protein Csa_4G192130 [Cucumis sativus])

HSP 1 Score: 211.1 bits (536), Expect = 1.0e-51
Identity = 106/113 (93.81%), Postives = 106/113 (93.81%), Query Frame = 1 

Query: 1   MTPLHLFSIFHPFSSPITNPNLNFTHRFPLPLHPQTLHFISNSSSSPPPQPSPPPPDPIL 60
           MTP HLFSIFHPFSSPI NPNLNFTH FPLPL PQTLHFISNSSSSPPP PSPPPPDPI 
Sbjct: 1   MTPPHLFSIFHPFSSPIINPNLNFTHTFPLPLRPQTLHFISNSSSSPPPPPSPPPPDPIP 60

Query: 61  EKRSIVVATRELVVATGELFLGMPVRLIKHSSDQTSNFVSMFDNRSGNVYMYV 114
           EKRSIVVAT ELVVATGELFLGMPVRLIKHSSDQTSNFVSMFDNRSGNVYMYV
Sbjct: 61  EKRSIVVATGELVVATGELFLGMPVRLIKHSSDQTSNFVSMFDNRSGNVYMYV 113

[Close]
BLAST of CSPI04G11260 vs. NCBI nr
Match: gi|449464490|ref|XP_004149962.1| (PREDICTED: patatin-like phospholipase domain-containing protein 2 [Cucumis sativus])

HSP 1 Score: 154.5 bits (389), Expect = 1.2e-34
Identity = 83/108 (76.85%), Postives = 84/108 (77.78%), Query Frame = 1 

Query: 1   MTPLHLFSIFHPFSSPITNPNLNFTHRFPLPLHPQTLHFISNSSSSPPPQPSPPPPDPIL 60
           M P HL SI HPFSSPITNPNLNFTHRF LPL  QTL FISNSSSSPPP PSPPPPDPI 
Sbjct: 1   MAPPHLSSISHPFSSPITNPNLNFTHRFSLPLRSQTLRFISNSSSSPPPPPSPPPPDPIP 60

Query: 61  EKRSIVVATRELVVATGELFLGMPVRLIKHSSDQTSNFVSMFDNRSGN 109
           EKRS  VAT       GELFLG+  RLIK SSDQTS  VSMFDNRSGN
Sbjct: 61  EKRSFAVAT-------GELFLGLAARLIKRSSDQTSKSVSMFDNRSGN 101

[Close]
BLAST of CSPI04G11260 vs. NCBI nr
Match: gi|659112152|ref|XP_008456089.1| (PREDICTED: uncharacterized protein LOC103496128 [Cucumis melo])

HSP 1 Score: 146.0 bits (367), Expect = 4.1e-32
Identity = 84/111 (75.68%), Postives = 86/111 (77.48%), Query Frame = 1 

Query: 1   MTPLHLFSIFHPFSS-PITNPNLNFTHRFPLPLHPQTLHFISN--SSSSPPPQPSPPPPD 60
           M P HL SI HPFSS PITNPNLNFT RFPLPL  QTL FISN  SSSSPPP PSPPPPD
Sbjct: 1   MAPPHLSSISHPFSSSPITNPNLNFTCRFPLPLRSQTLRFISNSSSSSSPPPPPSPPPPD 60

Query: 61  PILEKRSIVVATRELVVATGELFLGMPVRLIKHSSDQTSNFVSMFDNRSGN 109
           PI EKRS       L VATGELFLG+  RLIK SSDQTSN VSMFDNR+GN
Sbjct: 61  PIPEKRS-------LAVATGELFLGLAARLIKRSSDQTSNSVSMFDNRTGN 104

[Close]
BLAST of CSPI04G11260 vs. NCBI nr
Match: gi|658008273|ref|XP_008339328.1| (PREDICTED: patatin-like phospholipase domain-containing protein 4 [Malus domestica])

HSP 1 Score: 64.3 bits (155), Expect = 1.6e-07
Identity = 46/123 (37.40%), Postives = 61/123 (49.59%), Query Frame = 1 

Query: 4   LHLFSIFHPFSSPITNPNLNFTHRFPLPLHPQTL-HFI----------------SNSSSS 63
           LH   +  PFSSP  NPN N  HR+P+PL P  L H +                S+SSS+
Sbjct: 30  LHPNHLHLPFSSPNPNPNPNLLHRYPIPLRPLFLTHSVSPHSXPNSDTNQNSSSSSSSSA 89

Query: 64  PPPQPSPPPPDPILEKRSIVVATRELVVATGELFLGMPVRLIKHSSDQ-----TSNFVSM 105
           PPP P PPPP             +   VATGELFLG+  R+IK  +        ++ V+M
Sbjct: 90  PPPPPPPPPP-----------TKKSFAVATGELFLGLASRIIKRRNGDPEGKAAASSVAM 141

The following BLAST results are available for this feature:
BLAST of CSPI04G11260 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G11260 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L1C8_CUCSA7.2e-5293.81Uncharacterized protein OS=Cucumis sativus GN=Csa_4G192130 PE=4 SV=1[more]
A0A0A0L746_CUCSA8.0e-3576.85Patatin OS=Cucumis sativus GN=Csa_3G214570 PE=3 SV=1[more]
BLAST of CSPI04G11260 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI04G11260 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198783|gb|KGN53941.1|1.0e-5193.81hypothetical protein Csa_4G192130 [Cucumis sativus][more]
gi|449464490|ref|XP_004149962.1|1.2e-3476.85PREDICTED: patatin-like phospholipase domain-containing protein 2 [Cucumis sativ... [more]
gi|659112152|ref|XP_008456089.1|4.1e-3275.68PREDICTED: uncharacterized protein LOC103496128 [Cucumis melo][more]
gi|658008273|ref|XP_008339328.1|1.6e-0737.40PREDICTED: patatin-like phospholipase domain-containing protein 4 [Malus domesti... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006629 lipid metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G11260.1CSPI04G11260.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI04G11260Csa4G192130Cucumber (Chinese Long) v2cpicuB183
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI04G11260Cucumber (Gy14) v1cgycpiB513
CSPI04G11260Cucurbita maxima (Rimu)cmacpiB672
CSPI04G11260Cucurbita maxima (Rimu)cmacpiB877
CSPI04G11260Cucurbita moschata (Rifu)cmocpiB663
CSPI04G11260Cucurbita moschata (Rifu)cmocpiB857
CSPI04G11260Melon (DHL92) v3.5.1cpimeB323
CSPI04G11260Watermelon (Charleston Gray)cpiwcgB317
CSPI04G11260Watermelon (97103) v1cpiwmB346
CSPI04G11260Cucurbita pepo (Zucchini)cpecpiB076
CSPI04G11260Cucurbita pepo (Zucchini)cpecpiB498
CSPI04G11260Bottle gourd (USVL1VR-Ls)cpilsiB257
CSPI04G11260Melon (DHL92) v3.6.1cpimedB314
CSPI04G11260Cucumber (Gy14) v2cgybcpiB168
CSPI04G11260Silver-seed gourdcarcpiB0314
CSPI04G11260Silver-seed gourdcarcpiB0661
CSPI04G11260Cucumber (Chinese Long) v3cpicucB213
CSPI04G11260Watermelon (97103) v2cpiwmbB309
CSPI04G11260Wax gourdcpiwgoB408