Csa4G171490 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G171490
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Heat stress transcription factor B-3; contains IPR011991 (Winged helix-turn-helix DNA-binding domain)
Location	Chr4 : 8764352 .. 8764675 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGATGGAGTGAGTAATAATAATAATAATAGAAATGAGGAGAAGAAGTTGGGATCATGGCCGCCGCGGACAGCGGAGAATGAGATTAGAATGAGAAAGTCAACGCCGGCGCCGTTTCTGATGAAGACTTACCGGATGGTGGAGGATCCGGCGACGGACGACGTGATATCGTGGAACAGCGACGGCACGGCGTTTGTGGTTTGGCAGACGGCGGAATTTGCTAAAGATGTTTTGCCAAAGCTCTTTAAGCATTCCAATTTCTCTAGCTTTGTTCGCCAACTTAATACCTATGTACGTTTTTCTTATTTACCTATTTCATAA

mRNA sequence

ATGGAGGATGGAGTGAGTAATAATAATAATAATAGAAATGAGGAGAAGAAGTTGGGATCATGGCCGCCGCGGACAGCGGAGAATGAGATTAGAATGAGAAAGTCAACGCCGGCGCCGTTTCTGATGAAGACTTACCGGATGGTGGAGGATCCGGCGACGGACGACGTGATATCGTGGAACAGCGACGGCACGGCGTTTGTGGTTTGGCAGACGGCGGAATTTGCTAAAGATGTTTTGCCAAAGCTCTTTAAGCATTCCAATTTCTCTAGCTTTGTTCGCCAACTTAATACCTATGTACGTTTTTCTTATTTACCTATTTCATAA

Coding sequence (CDS)

ATGGAGGATGGAGTGAGTAATAATAATAATAATAGAAATGAGGAGAAGAAGTTGGGATCATGGCCGCCGCGGACAGCGGAGAATGAGATTAGAATGAGAAAGTCAACGCCGGCGCCGTTTCTGATGAAGACTTACCGGATGGTGGAGGATCCGGCGACGGACGACGTGATATCGTGGAACAGCGACGGCACGGCGTTTGTGGTTTGGCAGACGGCGGAATTTGCTAAAGATGTTTTGCCAAAGCTCTTTAAGCATTCCAATTTCTCTAGCTTTGTTCGCCAACTTAATACCTATGTACGTTTTTCTTATTTACCTATTTCATAA

Protein sequence

MEDGVSNNNNNRNEEKKLGSWPPRTAENEIRMRKSTPAPFLMKTYRMVEDPATDDVISWNSDGTAFVVWQTAEFAKDVLPKLFKHSNFSSFVRQLNTYVRFSYLPIS*

Homology

[Close]

BLAST of Csa4G171490 vs. Swiss-Prot
Match: HSF24_SOLPE (Heat shock factor protein HSF24 OS=Solanum peruvianum GN=HSF24 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.7e-24
Identity = 50/66 (75.76%), Postives = 59/66 (89.39%), Query Frame = 1


Query: 33 RKSTPAPFLMKTYRMVEDPATDDVISWNSDGTAFVVWQTAEFAKDVLPKLFKHSNFSSFV 92
          +++ PAPFL+KTY++V+D ATDDVISWN  GT FVVW+TAEFAKD+LPK FKH+NFSSFV
Sbjct: 3  QRTAPAPFLLKTYQLVDDAATDDVISWNEIGTTFVVWKTAEFAKDLLPKYFKHNNFSSFV 62

Query: 93 RQLNTY 99
          RQLNTY
Sbjct: 63 RQLNTY 68

[Close]

BLAST of Csa4G171490 vs. Swiss-Prot
Match: HSFB1_ARATH (Heat stress transcription factor B-1 OS=Arabidopsis thaliana GN=HSFB1 PE=2 SV=2)

HSP 1 Score: 112.8 bits (281), Expect = 2.3e-24
Identity = 48/66 (72.73%), Postives = 59/66 (89.39%), Query Frame = 1


Query: 33 RKSTPAPFLMKTYRMVEDPATDDVISWNSDGTAFVVWQTAEFAKDVLPKLFKHSNFSSFV 92
          ++S PAPFL KTY++V+D +TDDV+SWN +GTAFVVW+TAEFAKD+LP+ FKH+NFSSF+
Sbjct: 8  QRSVPAPFLSKTYQLVDDHSTDDVVSWNEEGTAFVVWKTAEFAKDLLPQYFKHNNFSSFI 67

Query: 93 RQLNTY 99
          RQLNTY
Sbjct: 68 RQLNTY 73

[Close]

BLAST of Csa4G171490 vs. Swiss-Prot
Match: HFB2C_ORYSJ (Heat stress transcription factor B-2c OS=Oryza sativa subsp. japonica GN=HSFB2C PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 3.9e-24
Identity = 49/66 (74.24%), Postives = 56/66 (84.85%), Query Frame = 1


Query: 33 RKSTPAPFLMKTYRMVEDPATDDVISWNSDGTAFVVWQTAEFAKDVLPKLFKHSNFSSFV 92
          ++S P PFL KTY++VEDPA DDVISWN DG+ FVVW+ AEFA+D+LPK FKH+NFSSFV
Sbjct: 32 QRSLPTPFLTKTYQLVEDPAVDDVISWNEDGSTFVVWRPAEFARDLLPKYFKHNNFSSFV 91

Query: 93 RQLNTY 99
          RQLNTY
Sbjct: 92 RQLNTY 97

[Close]

BLAST of Csa4G171490 vs. Swiss-Prot
Match: HFB2B_ORYSJ (Heat stress transcription factor B-2b OS=Oryza sativa subsp. japonica GN=HSFB2B PE=2 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.1e-23
Identity = 47/68 (69.12%), Postives = 57/68 (83.82%), Query Frame = 1


Query: 31  RMRKSTPAPFLMKTYRMVEDPATDDVISWNSDGTAFVVWQTAEFAKDVLPKLFKHSNFSS 90
           + +++ P PFL KTY++V+DPA DDVISWN DG+ FVVW+ AEFA+D+LPK FKH+NFSS
Sbjct: 40  QQQRTVPTPFLTKTYQLVDDPAVDDVISWNDDGSTFVVWRPAEFARDLLPKYFKHNNFSS 99

Query: 91  FVRQLNTY 99
           FVRQLNTY
Sbjct: 100 FVRQLNTY 107

[Close]

BLAST of Csa4G171490 vs. Swiss-Prot
Match: HFB2B_ARATH (Heat stress transcription factor B-2b OS=Arabidopsis thaliana GN=HSFB2B PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 5.6e-23
Identity = 46/66 (69.70%), Postives = 55/66 (83.33%), Query Frame = 1


Query: 33  RKSTPAPFLMKTYRMVEDPATDDVISWNSDGTAFVVWQTAEFAKDVLPKLFKHSNFSSFV 92
           ++S P PFL KTY++VEDP  D++ISWN DGT F+VW+ AEFA+D+LPK FKH+NFSSFV
Sbjct: 53  QRSIPTPFLTKTYQLVEDPVYDELISWNEDGTTFIVWRPAEFARDLLPKYFKHNNFSSFV 112

Query: 93  RQLNTY 99
           RQLNTY
Sbjct: 113 RQLNTY 118

[Close]

BLAST of Csa4G171490 vs. TrEMBL
Match: A0A0A0KYD7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G171490 PE=3 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.0e-55
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1


Query: 1   MEDGVSNNNNNRNEEKKLGSWPPRTAENEIRMRKSTPAPFLMKTYRMVEDPATDDVISWN 60
           MEDGVSNNNNNRNEEKKLGSWPPRTAENEIRMRKSTPAPFLMKTYRMVEDPATDDVISWN
Sbjct: 1   MEDGVSNNNNNRNEEKKLGSWPPRTAENEIRMRKSTPAPFLMKTYRMVEDPATDDVISWN 60

Query: 61  SDGTAFVVWQTAEFAKDVLPKLFKHSNFSSFVRQLNTYVRFSYLPIS 108
           SDGTAFVVWQTAEFAKDVLPKLFKHSNFSSFVRQLNTYVRFSYLPIS
Sbjct: 61  SDGTAFVVWQTAEFAKDVLPKLFKHSNFSSFVRQLNTYVRFSYLPIS 107

[Close]

BLAST of Csa4G171490 vs. TrEMBL
Match: A0A059DIB7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02338 PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 4.9e-26
Identity = 57/67 (85.07%), Postives = 63/67 (94.03%), Query Frame = 1


Query: 32 MRKSTPAPFLMKTYRMVEDPATDDVISWNSDGTAFVVWQTAEFAKDVLPKLFKHSNFSSF 91
          +RKSTP PFL+KTY +VEDPATDDVISWN+DGTAFVVWQ AEFA+D+LP LFKHSNFSSF
Sbjct: 19 VRKSTPPPFLLKTYMLVEDPATDDVISWNADGTAFVVWQPAEFARDLLPTLFKHSNFSSF 78

Query: 92 VRQLNTY 99
          VRQLNTY
Sbjct: 79 VRQLNTY 85

[Close]

BLAST of Csa4G171490 vs. TrEMBL
Match: M1CLT1_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400027283 PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.1e-25
Identity = 55/67 (82.09%), Postives = 64/67 (95.52%), Query Frame = 1


Query: 32 MRKSTPAPFLMKTYRMVEDPATDDVISWNSDGTAFVVWQTAEFAKDVLPKLFKHSNFSSF 91
          M+KS+P+PFL+KTY +VEDPATDDV+SWNSDG+AFVVWQ AEFA+D+LP LFKHSNFSSF
Sbjct: 21 MKKSSPSPFLLKTYMLVEDPATDDVVSWNSDGSAFVVWQPAEFARDLLPTLFKHSNFSSF 80

Query: 92 VRQLNTY 99
          VRQLNTY
Sbjct: 81 VRQLNTY 87

[Close]

BLAST of Csa4G171490 vs. TrEMBL
Match: A0A067K1D9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21103 PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.1e-25
Identity = 61/94 (64.89%), Postives = 71/94 (75.53%), Query Frame = 1


Query: 5  VSNNNNNRNEEKKLGSWPPRTAENEIRMRKSTPAPFLMKTYRMVEDPATDDVISWNSDGT 64
          V +NNN+ N  K L        E +  +RKSTP PFL+KTY +VEDPATD V+SWN DGT
Sbjct: 4  VDDNNNHNNNNKAL--------EYQY-VRKSTPPPFLLKTYMLVEDPATDHVVSWNDDGT 63

Query: 65 AFVVWQTAEFAKDVLPKLFKHSNFSSFVRQLNTY 99
           F+VWQ AEFA+D+LP LFKHSNFSSFVRQLNTY
Sbjct: 64 GFIVWQPAEFARDLLPTLFKHSNFSSFVRQLNTY 88

[Close]

BLAST of Csa4G171490 vs. TrEMBL
Match: A0A0U3SRJ2_VITPS (Transcription factor HsfB3a OS=Vitis pseudoreticulata PE=2 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.4e-25
Identity = 57/67 (85.07%), Postives = 62/67 (92.54%), Query Frame = 1


Query: 32 MRKSTPAPFLMKTYRMVEDPATDDVISWNSDGTAFVVWQTAEFAKDVLPKLFKHSNFSSF 91
          +RKSTP PFL+KTY +VEDPATD VISWNSDGTAFVVWQ AEFA+D+LP LFKHSNFSSF
Sbjct: 15 VRKSTPPPFLLKTYMLVEDPATDGVISWNSDGTAFVVWQPAEFARDLLPTLFKHSNFSSF 74

Query: 92 VRQLNTY 99
          VRQLNTY
Sbjct: 75 VRQLNTY 81

[Close]

BLAST of Csa4G171490 vs. TAIR10
Match: AT4G36990.1 (AT4G36990.1 heat shock factor 4)

HSP 1 Score: 112.8 bits (281), Expect = 1.3e-25
Identity = 48/66 (72.73%), Postives = 59/66 (89.39%), Query Frame = 1


Query: 33 RKSTPAPFLMKTYRMVEDPATDDVISWNSDGTAFVVWQTAEFAKDVLPKLFKHSNFSSFV 92
          ++S PAPFL KTY++V+D +TDDV+SWN +GTAFVVW+TAEFAKD+LP+ FKH+NFSSF+
Sbjct: 8  QRSVPAPFLSKTYQLVDDHSTDDVVSWNEEGTAFVVWKTAEFAKDLLPQYFKHNNFSSFI 67

Query: 93 RQLNTY 99
          RQLNTY
Sbjct: 68 RQLNTY 73

[Close]

BLAST of Csa4G171490 vs. TAIR10
Match: AT4G11660.1 (AT4G11660.1 winged-helix DNA-binding transcription factor family protein)

HSP 1 Score: 108.2 bits (269), Expect = 3.2e-24
Identity = 46/66 (69.70%), Postives = 55/66 (83.33%), Query Frame = 1


Query: 33  RKSTPAPFLMKTYRMVEDPATDDVISWNSDGTAFVVWQTAEFAKDVLPKLFKHSNFSSFV 92
           ++S P PFL KTY++VEDP  D++ISWN DGT F+VW+ AEFA+D+LPK FKH+NFSSFV
Sbjct: 53  QRSIPTPFLTKTYQLVEDPVYDELISWNEDGTTFIVWRPAEFARDLLPKYFKHNNFSSFV 112

Query: 93  RQLNTY 99
           RQLNTY
Sbjct: 113 RQLNTY 118

[Close]

BLAST of Csa4G171490 vs. TAIR10
Match: AT2G41690.1 (AT2G41690.1 heat shock transcription factor B3)

HSP 1 Score: 107.1 bits (266), Expect = 7.0e-24
Identity = 57/95 (60.00%), Postives = 64/95 (67.37%), Query Frame = 1


Query: 9  NNNRNEEKKLGSWPPRTAENEIRMRKST-----PAPFLMKTYRMVEDPATDDVISWNSDG 68
          N+N N+E++L        E  I    ST     P PFL+KTY++VEDP TD VISWN  G
Sbjct: 11 NDNVNDEERL------PLEFMIGNSTSTAELQPPPPFLVKTYKVVEDPTTDGVISWNEYG 70

Query: 69 TAFVVWQTAEFAKDVLPKLFKHSNFSSFVRQLNTY 99
          T FVVWQ AEFA+D+LP LFKH NFSSFVRQLNTY
Sbjct: 71 TGFVVWQPAEFARDLLPTLFKHCNFSSFVRQLNTY 99

[Close]

BLAST of Csa4G171490 vs. TAIR10
Match: AT1G46264.1 (AT1G46264.1 heat shock transcription factor B4)

HSP 1 Score: 104.0 bits (258), Expect = 6.0e-23
Identity = 45/65 (69.23%), Postives = 52/65 (80.00%), Query Frame = 1


Query: 34 KSTPAPFLMKTYRMVEDPATDDVISWNSDGTAFVVWQTAEFAKDVLPKLFKHSNFSSFVR 93
          K+ PAPFL KTY++V+DPATD V+SW  D T FVVW+  EFA+D+LP  FKH+NFSSFVR
Sbjct: 29 KAVPAPFLTKTYQLVDDPATDHVVSWGDDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVR 88

Query: 94 QLNTY 99
          QLNTY
Sbjct: 89 QLNTY 93

[Close]

BLAST of Csa4G171490 vs. TAIR10
Match: AT5G62020.1 (AT5G62020.1 heat shock transcription factor B2A)

HSP 1 Score: 103.2 bits (256), Expect = 1.0e-22
Identity = 45/70 (64.29%), Postives = 54/70 (77.14%), Query Frame = 1


Query: 29 EIRMRKSTPAPFLMKTYRMVEDPATDDVISWNSDGTAFVVWQTAEFAKDVLPKLFKHSNF 88
          E   ++S P PFL KT+ +VED + DDVISWN DG++F+VW   +FAKD+LPK FKH+NF
Sbjct: 13 ESSSQRSIPTPFLTKTFNLVEDSSIDDVISWNEDGSSFIVWNPTDFAKDLLPKHFKHNNF 72

Query: 89 SSFVRQLNTY 99
          SSFVRQLNTY
Sbjct: 73 SSFVRQLNTY 82

[Close]

BLAST of Csa4G171490 vs. NCBI nr
Match: gi|700198701|gb|KGN53859.1| (hypothetical protein Csa_4G171490 [Cucumis sativus])

HSP 1 Score: 223.8 bits (569), Expect = 1.5e-55
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1


Query: 1   MEDGVSNNNNNRNEEKKLGSWPPRTAENEIRMRKSTPAPFLMKTYRMVEDPATDDVISWN 60
           MEDGVSNNNNNRNEEKKLGSWPPRTAENEIRMRKSTPAPFLMKTYRMVEDPATDDVISWN
Sbjct: 1   MEDGVSNNNNNRNEEKKLGSWPPRTAENEIRMRKSTPAPFLMKTYRMVEDPATDDVISWN 60

Query: 61  SDGTAFVVWQTAEFAKDVLPKLFKHSNFSSFVRQLNTYVRFSYLPIS 108
           SDGTAFVVWQTAEFAKDVLPKLFKHSNFSSFVRQLNTYVRFSYLPIS
Sbjct: 61  SDGTAFVVWQTAEFAKDVLPKLFKHSNFSSFVRQLNTYVRFSYLPIS 107

[Close]

BLAST of Csa4G171490 vs. NCBI nr
Match: gi|449463360|ref|XP_004149402.1| (PREDICTED: heat stress transcription factor B-3 [Cucumis sativus])

HSP 1 Score: 206.5 bits (524), Expect = 2.4e-50
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1


Query: 1  MEDGVSNNNNNRNEEKKLGSWPPRTAENEIRMRKSTPAPFLMKTYRMVEDPATDDVISWN 60
          MEDGVSNNNNNRNEEKKLGSWPPRTAENEIRMRKSTPAPFLMKTYRMVEDPATDDVISWN
Sbjct: 1  MEDGVSNNNNNRNEEKKLGSWPPRTAENEIRMRKSTPAPFLMKTYRMVEDPATDDVISWN 60

Query: 61 SDGTAFVVWQTAEFAKDVLPKLFKHSNFSSFVRQLNTY 99
          SDGTAFVVWQTAEFAKDVLPKLFKHSNFSSFVRQLNTY
Sbjct: 61 SDGTAFVVWQTAEFAKDVLPKLFKHSNFSSFVRQLNTY 98

[Close]

BLAST of Csa4G171490 vs. NCBI nr
Match: gi|659121625|ref|XP_008460754.1| (PREDICTED: LOW QUALITY PROTEIN: heat stress transcription factor B-3 [Cucumis melo])

HSP 1 Score: 186.0 bits (471), Expect = 3.4e-44
Identity = 89/98 (90.82%), Postives = 92/98 (93.88%), Query Frame = 1


Query: 1  MEDGVSNNNNNRNEEKKLGSWPPRTAENEIRMRKSTPAPFLMKTYRMVEDPATDDVISWN 60
          ME GVS+NNNNRNEEKKL SWPP  AE+EIRMRKST APFLMKTYRMVEDP TDDVISWN
Sbjct: 1  MEAGVSDNNNNRNEEKKLESWPPWKAESEIRMRKSTTAPFLMKTYRMVEDPGTDDVISWN 60

Query: 61 SDGTAFVVWQTAEFAKDVLPKLFKHSNFSSFVRQLNTY 99
          SDGTAFVVWQTAEFAKD+LPKLFKHSNFSSFVRQLNTY
Sbjct: 61 SDGTAFVVWQTAEFAKDILPKLFKHSNFSSFVRQLNTY 98

[Close]

BLAST of Csa4G171490 vs. NCBI nr
Match: gi|702247598|ref|XP_010056944.1| (PREDICTED: heat stress transcription factor B-3 [Eucalyptus grandis])

HSP 1 Score: 125.2 bits (313), Expect = 7.1e-26
Identity = 57/67 (85.07%), Postives = 63/67 (94.03%), Query Frame = 1


Query: 32 MRKSTPAPFLMKTYRMVEDPATDDVISWNSDGTAFVVWQTAEFAKDVLPKLFKHSNFSSF 91
          +RKSTP PFL+KTY +VEDPATDDVISWN+DGTAFVVWQ AEFA+D+LP LFKHSNFSSF
Sbjct: 19 VRKSTPPPFLLKTYMLVEDPATDDVISWNADGTAFVVWQPAEFARDLLPTLFKHSNFSSF 78

Query: 92 VRQLNTY 99
          VRQLNTY
Sbjct: 79 VRQLNTY 85

[Close]

BLAST of Csa4G171490 vs. NCBI nr
Match: gi|1009159982|ref|XP_015898109.1| (PREDICTED: heat stress transcription factor B-3-like [Ziziphus jujuba])

HSP 1 Score: 125.2 bits (313), Expect = 7.1e-26
Identity = 57/67 (85.07%), Postives = 62/67 (92.54%), Query Frame = 1


Query: 32 MRKSTPAPFLMKTYRMVEDPATDDVISWNSDGTAFVVWQTAEFAKDVLPKLFKHSNFSSF 91
          MRKSTP PFL+KTY +VEDP TDDVISWN+DGTAFVVWQ AEFA+D+LP LFKHSNFSSF
Sbjct: 13 MRKSTPPPFLLKTYMLVEDPVTDDVISWNADGTAFVVWQPAEFARDLLPTLFKHSNFSSF 72

Query: 92 VRQLNTY 99
          VRQLNTY
Sbjct: 73 VRQLNTY 79

The following BLAST results are available for this feature:

BLAST of Csa4G171490 vs. Swiss-Prot


Match Name	E-value	Identity	Description
HSF24_SOLPE	1.7e-24	75.76	Heat shock factor protein HSF24 OS=Solanum peruvianum GN=HSF24 PE=2 SV=1	[more]
HSFB1_ARATH	2.3e-24	72.73	Heat stress transcription factor B-1 OS=Arabidopsis thaliana GN=HSFB1 PE=2 SV=2	[more]
HFB2C_ORYSJ	3.9e-24	74.24	Heat stress transcription factor B-2c OS=Oryza sativa subsp. japonica GN=HSFB2C ...	[more]
HFB2B_ORYSJ	1.1e-23	69.12	Heat stress transcription factor B-2b OS=Oryza sativa subsp. japonica GN=HSFB2B ...	[more]
HFB2B_ARATH	5.6e-23	69.70	Heat stress transcription factor B-2b OS=Arabidopsis thaliana GN=HSFB2B PE=2 SV=...	[more]

BLAST of Csa4G171490 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYD7_CUCSA	1.0e-55	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G171490 PE=3 SV=1	[more]
A0A059DIB7_EUCGR	4.9e-26	85.07	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02338 PE=3 SV=1	[more]
M1CLT1_SOLTU	1.1e-25	82.09	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400027283 PE=3 SV=1	[more]
A0A067K1D9_JATCU	1.1e-25	64.89	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21103 PE=3 SV=1	[more]
A0A0U3SRJ2_VITPS	1.4e-25	85.07	Transcription factor HsfB3a OS=Vitis pseudoreticulata PE=2 SV=1	[more]

BLAST of Csa4G171490 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G36990.1	1.3e-25	72.73	heat shock factor 4	[more]
AT4G11660.1	3.2e-24	69.70	winged-helix DNA-binding transcription factor family protein	[more]
AT2G41690.1	7.0e-24	60.00	heat shock transcription factor B3	[more]
AT1G46264.1	6.0e-23	69.23	heat shock transcription factor B4	[more]
AT5G62020.1	1.0e-22	64.29	heat shock transcription factor B2A	[more]

BLAST of Csa4G171490 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198701\|gb\|KGN53859.1\|	1.5e-55	100.00	hypothetical protein Csa_4G171490 [Cucumis sativus]	[more]
gi\|449463360\|ref\|XP_004149402.1\|	2.4e-50	100.00	PREDICTED: heat stress transcription factor B-3 [Cucumis sativus]	[more]
gi\|659121625\|ref\|XP_008460754.1\|	3.4e-44	90.82	PREDICTED: LOW QUALITY PROTEIN: heat stress transcription factor B-3 [Cucumis me...	[more]
gi\|702247598\|ref\|XP_010056944.1\|	7.1e-26	85.07	PREDICTED: heat stress transcription factor B-3 [Eucalyptus grandis]	[more]
gi\|1009159982\|ref\|XP_015898109.1\|	7.1e-26	85.07	PREDICTED: heat stress transcription factor B-3-like [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000232	HSF_DNA-bd
IPR011991	Winged helix-turn-helix DNA-binding domain
IPR027725	HSF_fam

Vocabulary: **Molecular Function**
Term	Definition
GO:0003700	transcription factor activity, sequence-specific DNA binding
GO:0043565	sequence-specific DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0009408	response to heat
biological_process	GO:0009407	toxin catabolic process
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa4G171490.1	Csa4G171490.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000232	Heat shock factor (HSF)-type, DNA-binding	PRINTS	PR00056	HSFDOMAIN	coord: 78..90 score: 1.1E-14coord: 91..103 score: 1.1E-14coord: 40..63 score: 1.1
IPR000232	Heat shock factor (HSF)-type, DNA-binding	PFAM	PF00447	HSF_DNA-bind	coord: 40..98 score: 4.9
IPR000232	Heat shock factor (HSF)-type, DNA-binding	SMART	SM00415	hsfneu3	coord: 36..107 score: 7.0
IPR011991	Winged helix-turn-helix DNA-binding domain	GENE3D	G3DSA:1.10.10.10		coord: 31..98 score: 7.7
IPR011991	Winged helix-turn-helix DNA-binding domain	unknown	SSF46785	"Winged helix" DNA-binding domain	coord: 36..100 score: 4.9
IPR027725	Heat shock transcription factor family	PANTHER	PTHR10015	HEAT SHOCK TRANSCRIPTION FACTOR	coord: 35..98 score: 7.2
None	No IPR available	PANTHER	PTHR10015:SF166	HEAT STRESS TRANSCRIPTION FACTOR B-1	coord: 35..98 score: 7.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa4G171490	Cla002516	Watermelon (97103) v1	cuwmB344
Csa4G171490	MELO3C023104	Melon (DHL92) v3.5.1	cumeB331
Csa4G171490	ClCG04G003410	Watermelon (Charleston Gray)	cuwcgB308
Csa4G171490	MELO3C023104.2	Melon (DHL92) v3.6.1	cumedB313
Csa4G171490	Cla97C04G070500	Watermelon (97103) v2	cuwmbB296
Csa4G171490	CSPI04G10760	Wild cucumber (PI 183967)	cpicuB182
Csa4G171490	Cucsa.164290	Cucumber (Gy14) v1	cgycuB246
Csa4G171490	CsGy4G010370	Cucumber (Gy14) v2	cgybcuB165

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa4G171490	Wax gourd	cuwgoB392
Csa4G171490	Cucurbita maxima (Rimu)	cmacuB666
Csa4G171490	Cucurbita maxima (Rimu)	cmacuB868
Csa4G171490	Cucurbita moschata (Rifu)	cmocuB654
Csa4G171490	Cucurbita moschata (Rifu)	cmocuB857
Csa4G171490	Watermelon (Charleston Gray)	cuwcgB299
Csa4G171490	Cucurbita pepo (Zucchini)	cpecuB080
Csa4G171490	Cucurbita pepo (Zucchini)	cpecuB489
Csa4G171490	Silver-seed gourd	carcuB0213
Csa4G171490	Silver-seed gourd	carcuB0313