Csa4G131140 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G131140
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 7933083 .. 7933841 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GACCACACAATTAGGAGAAAAAATTAGTGATCTATCTTTCTTGTTCTTTTGCAATTCCTCTACCTTCCAAAAGTAAACAAATAGATCCACACCCAACTCTTCCCTCTTTCTAAATTATTGTTCACACACGGGACTCTCCTCAAACACCATGGCTACAACATTTTCAATACCAACCATGGCAATCCTCATTCTGACTCTACTGTTCAACCCAACCCGTTGCAACACAACCGTCAATGAGACAACATCGGAGTGGTGCTACGGGTCCGAGAATTGCCTCGTCGGCGATGAGAGCTTGGATTCGGAGTTTTTAATGGAGACAGAGACCAGCCGGATGCTGCTGGACTTTCAGAATTTACAAACTCCAGGCACTATAGACCCTAACAGACAATCGGTTGCAGAATGTGGGCGGCCGCCACGGTACGACAGCTGCACTGGAGAAGAAAGGCAGATCCCCAACCCTGAAAATTGTGACGTCCGAAATCGCGCGAATCCGTGTTAGTCCTCCTCATCTTTTAGCTCCGATCGGAAGAATTGAAGCCAATGTATCTGTTTGTCGTTATTTGAATAAATGAATTGCAATATCTGTTTTAATCACAATCAGCTGTATAATCTTAATTACTCTCATTAGTTCATAATCATTTCAACCACTTGTTTAGTTAAGCTTTGATTCGAATTTTGTTAACATAATTTTCAAAATCTACTTTTACATCGAGTTGTGATATTACAAAGATAAAATATGTATTGAGTAAACTAATTTTG

mRNA sequence

ATGGCTACAACATTTTCAATACCAACCATGGCAATCCTCATTCTGACTCTACTGTTCAACCCAACCCGTTGCAACACAACCGTCAATGAGACAACATCGGAGTGGTGCTACGGGTCCGAGAATTGCCTCGTCGGCGATGAGAGCTTGGATTCGGAGTTTTTAATGGAGACAGAGACCAGCCGGATGCTGCTGGACTTTCAGAATTTACAAACTCCAGGCACTATAGACCCTAACAGACAATCGGTTGCAGAATGTGGGCGGCCGCCACGGTACGACAGCTGCACTGGAGAAGAAAGGCAGATCCCCAACCCTGAAAATTGTGACGTCCGAAATCGCGCGAATCCGTGTTAG

Coding sequence (CDS)

ATGGCTACAACATTTTCAATACCAACCATGGCAATCCTCATTCTGACTCTACTGTTCAACCCAACCCGTTGCAACACAACCGTCAATGAGACAACATCGGAGTGGTGCTACGGGTCCGAGAATTGCCTCGTCGGCGATGAGAGCTTGGATTCGGAGTTTTTAATGGAGACAGAGACCAGCCGGATGCTGCTGGACTTTCAGAATTTACAAACTCCAGGCACTATAGACCCTAACAGACAATCGGTTGCAGAATGTGGGCGGCCGCCACGGTACGACAGCTGCACTGGAGAAGAAAGGCAGATCCCCAACCCTGAAAATTGTGACGTCCGAAATCGCGCGAATCCGTGTTAG

Protein sequence

MATTFSIPTMAILILTLLFNPTRCNTTVNETTSEWCYGSENCLVGDESLDSEFLMETETSRMLLDFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRANPC*
Homology
[Close]
BLAST of Csa4G131140 vs. TrEMBL
Match: A0A0A0KVZ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G131140 PE=4 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 9.3e-63
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1 

Query: 1   MATTFSIPTMAILILTLLFNPTRCNTTVNETTSEWCYGSENCLVGDESLDSEFLMETETS 60
           MATTFSIPTMAILILTLLFNPTRCNTTVNETTSEWCYGSENCLVGDESLDSEFLMETETS
Sbjct: 1   MATTFSIPTMAILILTLLFNPTRCNTTVNETTSEWCYGSENCLVGDESLDSEFLMETETS 60

Query: 61  RMLLDFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRANPC 117
           RMLLDFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRANPC
Sbjct: 61  RMLLDFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRANPC 116

[Close]
BLAST of Csa4G131140 vs. TrEMBL
Match: A0A0A0KW62_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G130630 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.2e-28
Identity = 67/119 (56.30%), Postives = 80/119 (67.23%), Query Frame = 1 

Query: 1   MATTFSIPTMAILILTLLFNPTRCNTTVNETTSEWC--YGSENCLVGDESLDSEFLMETE 60
           MA T ++P+MA LI  LL NP   N  +N+T S+WC   G ENCLVGD +  SEFLM TE
Sbjct: 9   MAATLTMPSMAFLITILLLNPIISNAGMNDTESKWCDSTGLENCLVGDLNSHSEFLMLTE 68

Query: 61  TSRMLLD-FQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRANPC 117
           +S ML+D F   QTP   D N++SV +C RPPRYDSC G +R IPNPE C   NR NPC
Sbjct: 69  SSGMLVDQFLTFQTPKANDANKESVPDCSRPPRYDSCLGSKRSIPNPEPCSTLNRVNPC 127

[Close]
BLAST of Csa4G131140 vs. TrEMBL
Match: A0A0A0LCJ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298580 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.3e-16
Identity = 47/117 (40.17%), Postives = 65/117 (55.56%), Query Frame = 1 

Query: 2   ATTFSIPTMAILILTLLFNPTRCN--TTVNETTSEWCYGSENCLVGDESLDSEFLMETET 61
           A+   IP   + ++ LL  P+ C+  TT     S         ++G+E ++ EFLME+  
Sbjct: 3   ASALMIPAAVVTMILLLHIPSSCDALTTFQPLLSNHSSYGGKLMMGEEDMELEFLMESHI 62

Query: 62  SRMLLDFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRANPC 117
           SR+L   +N QT  T + N+ S   C RPPRYDSC G++R  P P NC   NRANPC
Sbjct: 63  SRILASSKNYQTASTTNANKASGGGCDRPPRYDSCLGKKRNNPPPPNCSPYNRANPC 119

[Close]
BLAST of Csa4G131140 vs. TrEMBL
Match: A0A0A0L711_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298570 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 6.1e-14
Identity = 45/118 (38.14%), Postives = 62/118 (52.54%), Query Frame = 1 

Query: 2   ATTFSIPTMAILILTLLFNPTRCN---TTVNETTSEWCYGSENCLVGDESLDSEFLMETE 61
           A    IP    ++L +L  PT C    T+     +    G    +V +E + S F+ME+ 
Sbjct: 4   APALMIPAAMAMMLMMLI-PTACGGALTSFKPLNNHTSGGLVKYMVEEEDIKSNFVMESH 63

Query: 62  TSRMLLDFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRANPC 117
            SRML D Q+ +T  T +  + S  EC RPPRYDSC G +R  P P+NC   NR +PC
Sbjct: 64  ISRMLADSQDFETSSTNNATQVSAGECDRPPRYDSCLGVKRNTPPPQNCSTFNREHPC 120

[Close]
BLAST of Csa4G131140 vs. TrEMBL
Match: A0A0A0L9X5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298070 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 8.8e-13
Identity = 51/118 (43.22%), Postives = 66/118 (55.93%), Query Frame = 1 

Query: 2   ATTFSIPTMAILILTLLFNPTRCNTTV-NETTSEWCYGSENCLVGDESLDSEFLMETETS 61
           A T SI T  + I+TLL     C+  + ++            L+GD  +D++FLME+  S
Sbjct: 3   AATLSIRT-TLAIVTLLLVAVGCDAFIASKPVFNLSSDLGKRLIGD--IDTDFLMESHVS 62

Query: 62  RML--LDFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRANPC 117
           R+L  L F+ ++TP     N  SV  C RPPRYDSC GE R  P  ENCD  NRANPC
Sbjct: 63  RILAELRFETMRTPNA---NSASVVNCERPPRYDSCLGEARDNPPSENCDPYNRANPC 114

[Close]
BLAST of Csa4G131140 vs. NCBI nr
Match: gi|700198642|gb|KGN53800.1| (hypothetical protein Csa_4G131140 [Cucumis sativus])

HSP 1 Score: 247.3 bits (630), Expect = 1.3e-62
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1 

Query: 1   MATTFSIPTMAILILTLLFNPTRCNTTVNETTSEWCYGSENCLVGDESLDSEFLMETETS 60
           MATTFSIPTMAILILTLLFNPTRCNTTVNETTSEWCYGSENCLVGDESLDSEFLMETETS
Sbjct: 1   MATTFSIPTMAILILTLLFNPTRCNTTVNETTSEWCYGSENCLVGDESLDSEFLMETETS 60

Query: 61  RMLLDFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRANPC 117
           RMLLDFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRANPC
Sbjct: 61  RMLLDFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRANPC 116

[Close]
BLAST of Csa4G131140 vs. NCBI nr
Match: gi|700198640|gb|KGN53798.1| (hypothetical protein Csa_4G130630 [Cucumis sativus])

HSP 1 Score: 134.0 bits (336), Expect = 1.7e-28
Identity = 67/119 (56.30%), Postives = 80/119 (67.23%), Query Frame = 1 

Query: 1   MATTFSIPTMAILILTLLFNPTRCNTTVNETTSEWC--YGSENCLVGDESLDSEFLMETE 60
           MA T ++P+MA LI  LL NP   N  +N+T S+WC   G ENCLVGD +  SEFLM TE
Sbjct: 9   MAATLTMPSMAFLITILLLNPIISNAGMNDTESKWCDSTGLENCLVGDLNSHSEFLMLTE 68

Query: 61  TSRMLLD-FQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRANPC 117
           +S ML+D F   QTP   D N++SV +C RPPRYDSC G +R IPNPE C   NR NPC
Sbjct: 69  SSGMLVDQFLTFQTPKANDANKESVPDCSRPPRYDSCLGSKRSIPNPEPCSTLNRVNPC 127

[Close]
BLAST of Csa4G131140 vs. NCBI nr
Match: gi|700202648|gb|KGN57781.1| (hypothetical protein Csa_3G298580 [Cucumis sativus])

HSP 1 Score: 93.2 bits (230), Expect = 3.2e-16
Identity = 47/117 (40.17%), Postives = 65/117 (55.56%), Query Frame = 1 

Query: 2   ATTFSIPTMAILILTLLFNPTRCN--TTVNETTSEWCYGSENCLVGDESLDSEFLMETET 61
           A+   IP   + ++ LL  P+ C+  TT     S         ++G+E ++ EFLME+  
Sbjct: 3   ASALMIPAAVVTMILLLHIPSSCDALTTFQPLLSNHSSYGGKLMMGEEDMELEFLMESHI 62

Query: 62  SRMLLDFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRANPC 117
           SR+L   +N QT  T + N+ S   C RPPRYDSC G++R  P P NC   NRANPC
Sbjct: 63  SRILASSKNYQTASTTNANKASGGGCDRPPRYDSCLGKKRNNPPPPNCSPYNRANPC 119

[Close]
BLAST of Csa4G131140 vs. NCBI nr
Match: gi|778680757|ref|XP_011651393.1| (PREDICTED: uncharacterized protein LOC105434882 [Cucumis sativus])

HSP 1 Score: 85.1 bits (209), Expect = 8.8e-14
Identity = 45/118 (38.14%), Postives = 62/118 (52.54%), Query Frame = 1 

Query: 2   ATTFSIPTMAILILTLLFNPTRCN---TTVNETTSEWCYGSENCLVGDESLDSEFLMETE 61
           A    IP    ++L +L  PT C    T+     +    G    +V +E + S F+ME+ 
Sbjct: 4   APALMIPAAMAMMLMMLI-PTACGGALTSFKPLNNHTSGGLVKYMVEEEDIKSNFVMESH 63

Query: 62  TSRMLLDFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRANPC 117
            SRML D Q+ +T  T +  + S  EC RPPRYDSC G +R  P P+NC   NR +PC
Sbjct: 64  ISRMLADSQDFETSSTNNATQVSAGECDRPPRYDSCLGVKRNTPPPQNCSTFNREHPC 120

[Close]
BLAST of Csa4G131140 vs. NCBI nr
Match: gi|700202646|gb|KGN57779.1| (hypothetical protein Csa_3G298070 [Cucumis sativus])

HSP 1 Score: 81.3 bits (199), Expect = 1.3e-12
Identity = 51/118 (43.22%), Postives = 66/118 (55.93%), Query Frame = 1 

Query: 2   ATTFSIPTMAILILTLLFNPTRCNTTV-NETTSEWCYGSENCLVGDESLDSEFLMETETS 61
           A T SI T  + I+TLL     C+  + ++            L+GD  +D++FLME+  S
Sbjct: 3   AATLSIRT-TLAIVTLLLVAVGCDAFIASKPVFNLSSDLGKRLIGD--IDTDFLMESHVS 62

Query: 62  RML--LDFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRANPC 117
           R+L  L F+ ++TP     N  SV  C RPPRYDSC GE R  P  ENCD  NRANPC
Sbjct: 63  RILAELRFETMRTPNA---NSASVVNCERPPRYDSCLGEARDNPPSENCDPYNRANPC 114

The following BLAST results are available for this feature:
BLAST of Csa4G131140 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KVZ2_CUCSA9.3e-63100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G131140 PE=4 SV=1[more]
A0A0A0KW62_CUCSA1.2e-2856.30Uncharacterized protein OS=Cucumis sativus GN=Csa_4G130630 PE=4 SV=1[more]
A0A0A0LCJ4_CUCSA2.3e-1640.17Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298580 PE=4 SV=1[more]
A0A0A0L711_CUCSA6.1e-1438.14Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298570 PE=4 SV=1[more]
A0A0A0L9X5_CUCSA8.8e-1343.22Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298070 PE=4 SV=1[more]
BLAST of Csa4G131140 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198642|gb|KGN53800.1|1.3e-62100.00hypothetical protein Csa_4G131140 [Cucumis sativus][more]
gi|700198640|gb|KGN53798.1|1.7e-2856.30hypothetical protein Csa_4G130630 [Cucumis sativus][more]
gi|700202648|gb|KGN57781.1|3.2e-1640.17hypothetical protein Csa_3G298580 [Cucumis sativus][more]
gi|778680757|ref|XP_011651393.1|8.8e-1438.14PREDICTED: uncharacterized protein LOC105434882 [Cucumis sativus][more]
gi|700202646|gb|KGN57779.1|1.3e-1243.22hypothetical protein Csa_3G298070 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU094580cucumber EST collection version 3.0transcribed_cluster
CU108899cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G131140.1Csa4G131140.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU108899CU108899transcribed_cluster
CU094580CU094580transcribed_cluster