Csa4G129550 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G129550
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 7844051 .. 7844598 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTCCCCAATTCTATAAACTTAAAACCTTACATCCACAAATTCTTCACCCTTTTTCATTTCTTCCAATTTCATTCACGTAAGCTGCAATGGCGACCGCGGCAGCACCCTCCACCACCGCCATGACAATCCTCATTTTGACGCTAACCATAAGTAGTTATTGCAACGCCGCTTCTGTACTTCCTTCAAATTTCGCTAACGAGACGATCACGGCTATGACATCCACCATCTTTTGTAATGGACTCCTCCAACAGTGCTTCAATGTTGAAGAAAATGGCATCCATTATTATTCTACTCCAAGAACTGGAAGTCGAGCTTCAAGCGTATGTGGTCGGTTCTATAATGGAAGCTATATTAAATGTATAACAACCCAAGGATCCCCCAAACCGAAGGATTGTAGAAGTGCTTACGATCGCACCTGTTCTAGTTAAGAATACAGAAGTATATATAAGGTATATGTACGGTGTAGCTTGTTTTTTTTTTATTTATTTTAAATCACTATTAACCCTTCTTCTTTACTTGATCTTCATAATGCAATTTTATTATATTA

mRNA sequence

ATGGCGACCGCGGCAGCACCCTCCACCACCGCCATGACAATCCTCATTTTGACGCTAACCATAAGTAGTTATTGCAACGCCGCTTCTGTACTTCCTTCAAATTTCGCTAACGAGACGATCACGGCTATGACATCCACCATCTTTTGTAATGGACTCCTCCAACAGTGCTTCAATGTTGAAGAAAATGGCATCCATTATTATTCTACTCCAAGAACTGGAAGTCGAGCTTCAAGCGTATGTGGTCGGTTCTATAATGGAAGCTATATTAAATGTATAACAACCCAAGGATCCCCCAAACCGAAGGATTGTAGAAGTGCTTACGATCGCACCTGTTCTAGTTAA

Coding sequence (CDS)

ATGGCGACCGCGGCAGCACCCTCCACCACCGCCATGACAATCCTCATTTTGACGCTAACCATAAGTAGTTATTGCAACGCCGCTTCTGTACTTCCTTCAAATTTCGCTAACGAGACGATCACGGCTATGACATCCACCATCTTTTGTAATGGACTCCTCCAACAGTGCTTCAATGTTGAAGAAAATGGCATCCATTATTATTCTACTCCAAGAACTGGAAGTCGAGCTTCAAGCGTATGTGGTCGGTTCTATAATGGAAGCTATATTAAATGTATAACAACCCAAGGATCCCCCAAACCGAAGGATTGTAGAAGTGCTTACGATCGCACCTGTTCTAGTTAA

Protein sequence

MATAAAPSTTAMTILILTLTISSYCNAASVLPSNFANETITAMTSTIFCNGLLQQCFNVEENGIHYYSTPRTGSRASSVCGRFYNGSYIKCITTQGSPKPKDCRSAYDRTCSS*
Homology
[Close]
BLAST of Csa4G129550 vs. TrEMBL
Match: A0A0A0KY59_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G129550 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 1.4e-58
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 1 

Query: 1   MATAAAPSTTAMTILILTLTISSYCNAASVLPSNFANETITAMTSTIFCNGLLQQCFNVE 60
           MATAAAPSTTAMTILILTLTISSYCNAASVLPSNFANETITAMTSTIFCNGLLQQCFNVE
Sbjct: 1   MATAAAPSTTAMTILILTLTISSYCNAASVLPSNFANETITAMTSTIFCNGLLQQCFNVE 60

Query: 61  ENGIHYYSTPRTGSRASSVCGRFYNGSYIKCITTQGSPKPKDCRSAYDRTCSS 114
           ENGIHYYSTPRTGSRASSVCGRFYNGSYIKCITTQGSPKPKDCRSAYDRTCSS
Sbjct: 61  ENGIHYYSTPRTGSRASSVCGRFYNGSYIKCITTQGSPKPKDCRSAYDRTCSS 113

[Close]
BLAST of Csa4G129550 vs. NCBI nr
Match: gi|700198631|gb|KGN53789.1| (hypothetical protein Csa_4G129550 [Cucumis sativus])

HSP 1 Score: 233.4 bits (594), Expect = 1.9e-58
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 1 

Query: 1   MATAAAPSTTAMTILILTLTISSYCNAASVLPSNFANETITAMTSTIFCNGLLQQCFNVE 60
           MATAAAPSTTAMTILILTLTISSYCNAASVLPSNFANETITAMTSTIFCNGLLQQCFNVE
Sbjct: 1   MATAAAPSTTAMTILILTLTISSYCNAASVLPSNFANETITAMTSTIFCNGLLQQCFNVE 60

Query: 61  ENGIHYYSTPRTGSRASSVCGRFYNGSYIKCITTQGSPKPKDCRSAYDRTCSS 114
           ENGIHYYSTPRTGSRASSVCGRFYNGSYIKCITTQGSPKPKDCRSAYDRTCSS
Sbjct: 61  ENGIHYYSTPRTGSRASSVCGRFYNGSYIKCITTQGSPKPKDCRSAYDRTCSS 113

The following BLAST results are available for this feature:
BLAST of Csa4G129550 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KY59_CUCSA1.4e-58100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G129550 PE=4 SV=1[more]
BLAST of Csa4G129550 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198631|gb|KGN53789.1|1.9e-58100.00hypothetical protein Csa_4G129550 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU103541cucumber EST collection version 3.0transcribed_cluster
CU109900cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G129550.1Csa4G129550.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU109900CU109900transcribed_cluster
CU103541CU103541transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa4G129550Cla010820Watermelon (97103) v1cuwmB306
Csa4G129550ClCG07G015940Watermelon (Charleston Gray)cuwcgB327
Csa4G129550Cla97C07G142950Watermelon (97103) v2cuwmbB324
Csa4G129550Bhi01G001736Wax gourdcuwgoB369
Csa4G129550CSPI04G10030Wild cucumber (PI 183967)cpicuB182
Csa4G129550CsGy4G009670Cucumber (Gy14) v2cgybcuB165
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G129550Watermelon (97103) v2cuwmbB295
Csa4G129550Watermelon (97103) v2cuwmbB314
Csa4G129550Wax gourdcuwgoB413
Csa4G129550Wax gourdcuwgoB427
Csa4G129550Cucumber (Chinese Long) v2cucuB027
Csa4G129550Cucumber (Gy14) v1cgycuB141
Csa4G129550Cucumber (Gy14) v1cgycuB266
Csa4G129550Cucurbita maxima (Rimu)cmacuB262
Csa4G129550Cucurbita maxima (Rimu)cmacuB476
Csa4G129550Cucurbita moschata (Rifu)cmocuB247
Csa4G129550Cucurbita moschata (Rifu)cmocuB465
Csa4G129550Melon (DHL92) v3.5.1cumeB270
Csa4G129550Melon (DHL92) v3.5.1cumeB279
Csa4G129550Melon (DHL92) v3.5.1cumeB288
Csa4G129550Melon (DHL92) v3.5.1cumeB316
Csa4G129550Watermelon (Charleston Gray)cuwcgB298
Csa4G129550Watermelon (97103) v1cuwmB337
Csa4G129550Watermelon (97103) v1cuwmB357
Csa4G129550Cucurbita pepo (Zucchini)cpecuB567
Csa4G129550Cucurbita pepo (Zucchini)cpecuB617
Csa4G129550Bottle gourd (USVL1VR-Ls)culsiB272
Csa4G129550Bottle gourd (USVL1VR-Ls)culsiB302
Csa4G129550Bottle gourd (USVL1VR-Ls)culsiB313
Csa4G129550Cucumber (Gy14) v2cgybcuB029
Csa4G129550Melon (DHL92) v3.6.1cumedB264
Csa4G129550Melon (DHL92) v3.6.1cumedB273
Csa4G129550Melon (DHL92) v3.6.1cumedB300