Csa4G129010 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G129010
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionLOB domain-containing protein; contains IPR004883 (Lateral organ boundaries, LOB)
LocationChr4 : 7801601 .. 7802286 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGCTTGCTGAGTTGGGCGTTCTTCTCGACGCTGAGAAAAAGGTAATCAGCAAACAACAAGCTTCTGTCGAGCCTCAACCAAAGGCAATGGCGGCCTTTCAGACCTGGACGCGCGCTGCTAATGGTGGACGATTTTAGAGCAAGAGGAAGAGGAAGGCAAAATCGAAATAGGCAAAATTGTAAGCATAACTTAACTTTGGGTTAATGGGATAGGAAAAGGGTAAATTGCAAAAAGAGAAAAAACAAATAAAATGGGAAATTAACCATAATCTTTAAAGGTACGAAGAGTTATGGGATGGATTTTTAGAGAAACGAGTTTTCGGACGAATTAACTACAAAAAGTCTATATTGCCCTTAAGTTAATAAAAAAAAACTTAAAAACAAACTTCTACTATTCTTCTCCTTTTCCTCTCTCATTTTCGGCTTTCTCCTTCTCCCTCACCCTCTTCTACTAAGCAATATGCAGCGACTTCAACTTTCTCCTTTCTCAGTCATCATCGTCGATTGTTCAAGCCTCCGTGATGGTTAGTCCATGTGTGGCGTGCAAGATTCTACGTCGGAGATGTGTAGAAAAATGCATGTTGACACCCTATTTTCCTCCCTCTAAGCCTCTCAAGTTCATCATTGCTCACTGCATCTTCGGCACTAGCAACATCATCAAATTGCTTCTAGTACTTCTTTAA

mRNA sequence

ATGACGCTTGCTGAGTTGGGCGTTCTTCTCGACGCTGAGAAAAAGGTAATCAGCAAACAACAAGCTTCTGTCGAGCCTCAACCAAAGGCAATGGCGGCCTTTCAGACCTGGACGCGCGCTGCTAATGAAAAATGCATGTTGACACCCTATTTTCCTCCCTCTAAGCCTCTCAAGTTCATCATTGCTCACTGCATCTTCGGCACTAGCAACATCATCAAATTGCTTCTAGTACTTCTTTAA

Coding sequence (CDS)

ATGACGCTTGCTGAGTTGGGCGTTCTTCTCGACGCTGAGAAAAAGGTAATCAGCAAACAACAAGCTTCTGTCGAGCCTCAACCAAAGGCAATGGCGGCCTTTCAGACCTGGACGCGCGCTGCTAATGAAAAATGCATGTTGACACCCTATTTTCCTCCCTCTAAGCCTCTCAAGTTCATCATTGCTCACTGCATCTTCGGCACTAGCAACATCATCAAATTGCTTCTAGTACTTCTTTAA

Protein sequence

MTLAELGVLLDAEKKVISKQQASVEPQPKAMAAFQTWTRAANEKCMLTPYFPPSKPLKFIIAHCIFGTSNIIKLLLVLL*
Homology
[Close]
BLAST of Csa4G129010 vs. Swiss-Prot
Match: LBD11_ARATH (LOB domain-containing protein 11 OS=Arabidopsis thaliana GN=LBD11 PE=2 SV=2)

HSP 1 Score: 56.6 bits (135), Expect = 1.4e-07
Identity = 28/54 (51.85%), Postives = 33/54 (61.11%), Query Frame = 1 

Query: 26  PQPKAM----AAFQTWTRAANEKCMLTPYFPPSKPLKFIIAHCIFGTSNIIKLL 76
           PQP  +    AA +   R   +KC+L PYFPP+ P KF IAH +FG SNIIK L
Sbjct: 47  PQPPVVLSPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFL 100

[Close]
BLAST of Csa4G129010 vs. Swiss-Prot
Match: LBD1_ARATH (LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.2e-07
Identity = 25/44 (56.82%), Postives = 29/44 (65.91%), Query Frame = 1 

Query: 32 AAFQTWTRAANEKCMLTPYFPPSKPLKFIIAHCIFGTSNIIKLL 76
          AA +   R   E+C+L PYFPP+ P KF IAH +FG SNIIK L
Sbjct: 35 AACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFL 78

[Close]
BLAST of Csa4G129010 vs. TrEMBL
Match: A0A0A0KY54_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G129010 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 2.3e-36
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1 

Query: 1  MTLAELGVLLDAEKKVISKQQASVEPQPKAMAAFQTWTRAANEKCMLTPYFPPSKPLKFI 60
          MTLAELGVLLDAEKKVISKQQASVEPQPKAMAAFQTWTRAANEKCMLTPYFPPSKPLKFI
Sbjct: 1  MTLAELGVLLDAEKKVISKQQASVEPQPKAMAAFQTWTRAANEKCMLTPYFPPSKPLKFI 60

Query: 61 IAHCIFGTSNIIKLLLVLL 80
          IAHCIFGTSNIIKLLLVLL
Sbjct: 61 IAHCIFGTSNIIKLLLVLL 79

[Close]
BLAST of Csa4G129010 vs. TrEMBL
Match: A0A078EW60_BRANA (BnaA09g49180D protein OS=Brassica napus GN=BnaA09g49180D PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.4e-08
Identity = 34/69 (49.28%), Postives = 42/69 (60.87%), Query Frame = 1 

Query: 11 DAEKKVISKQQASVEPQPKAM----AAFQTWTRAANEKCMLTPYFPPSKPLKFIIAHCIF 70
          DA   +I    AS  P P+ +    AA +   R   EKC+L PYFPP++P KF IAH +F
Sbjct: 9  DASAAIIYASPASSPPPPRVVLSPCAACKILRRRCGEKCVLAPYFPPTEPAKFSIAHRVF 68

Query: 71 GTSNIIKLL 76
          G SNIIKLL
Sbjct: 69 GASNIIKLL 77

[Close]
BLAST of Csa4G129010 vs. TrEMBL
Match: A0A078GDJ4_BRANA (BnaC08g43470D protein OS=Brassica napus GN=BnaC08g43470D PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.4e-08
Identity = 34/69 (49.28%), Postives = 42/69 (60.87%), Query Frame = 1 

Query: 11 DAEKKVISKQQASVEPQPKAM----AAFQTWTRAANEKCMLTPYFPPSKPLKFIIAHCIF 70
          DA   +I    AS  P P+ +    AA +   R   EKC+L PYFPP++P KF IAH +F
Sbjct: 9  DASAAIIYASPASSPPPPRVVLSPCAACKILRRRCGEKCVLAPYFPPTEPAKFSIAHRVF 68

Query: 71 GTSNIIKLL 76
          G SNIIKLL
Sbjct: 69 GASNIIKLL 77

[Close]
BLAST of Csa4G129010 vs. TrEMBL
Match: M4ES21_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.4e-08
Identity = 34/69 (49.28%), Postives = 42/69 (60.87%), Query Frame = 1 

Query: 11 DAEKKVISKQQASVEPQPKAM----AAFQTWTRAANEKCMLTPYFPPSKPLKFIIAHCIF 70
          DA   +I    AS  P P+ +    AA +   R   EKC+L PYFPP++P KF IAH +F
Sbjct: 9  DASAAIIYASPASSPPPPRVVLSPCAACKILRRRCGEKCVLAPYFPPTEPAKFSIAHRVF 68

Query: 71 GTSNIIKLL 76
          G SNIIKLL
Sbjct: 69 GASNIIKLL 77

[Close]
BLAST of Csa4G129010 vs. TrEMBL
Match: A0A0D3DYI0_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.4e-08
Identity = 34/69 (49.28%), Postives = 42/69 (60.87%), Query Frame = 1 

Query: 11 DAEKKVISKQQASVEPQPKAM----AAFQTWTRAANEKCMLTPYFPPSKPLKFIIAHCIF 70
          DA   +I    AS  P P+ +    AA +   R   EKC+L PYFPP++P KF IAH +F
Sbjct: 9  DASAAIIYASPASSPPPPRVVLSPCAACKILRRRCGEKCVLAPYFPPTEPAKFSIAHRVF 68

Query: 71 GTSNIIKLL 76
          G SNIIKLL
Sbjct: 69 GASNIIKLL 77

[Close]
BLAST of Csa4G129010 vs. TAIR10
Match: AT2G28500.1 (AT2G28500.1 LOB domain-containing protein 11)

HSP 1 Score: 56.6 bits (135), Expect = 8.1e-09
Identity = 28/54 (51.85%), Postives = 33/54 (61.11%), Query Frame = 1 

Query: 26  PQPKAM----AAFQTWTRAANEKCMLTPYFPPSKPLKFIIAHCIFGTSNIIKLL 76
           PQP  +    AA +   R   +KC+L PYFPP+ P KF IAH +FG SNIIK L
Sbjct: 47  PQPPVVLSPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFL 100

[Close]
BLAST of Csa4G129010 vs. TAIR10
Match: AT1G07900.1 (AT1G07900.1 LOB domain-containing protein 1)

HSP 1 Score: 55.1 bits (131), Expect = 2.4e-08
Identity = 25/44 (56.82%), Postives = 29/44 (65.91%), Query Frame = 1 

Query: 32 AAFQTWTRAANEKCMLTPYFPPSKPLKFIIAHCIFGTSNIIKLL 76
          AA +   R   E+C+L PYFPP+ P KF IAH +FG SNIIK L
Sbjct: 35 AACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFL 78

[Close]
BLAST of Csa4G129010 vs. TAIR10
Match: AT2G23660.1 (AT2G23660.1 LOB domain-containing protein 10)

HSP 1 Score: 50.1 bits (118), Expect = 7.6e-07
Identity = 20/44 (45.45%), Postives = 26/44 (59.09%), Query Frame = 1 

Query: 32 AAFQTWTRAANEKCMLTPYFPPSKPLKFIIAHCIFGTSNIIKLL 76
          AA +   R   ++C+  PYFPP+ P KFI  H +FG SN+ K+L
Sbjct: 7  AACKLLRRKCTQECVFAPYFPPTNPQKFIFVHRVFGASNVTKIL 50

[Close]
BLAST of Csa4G129010 vs. TAIR10
Match: AT5G66870.1 (AT5G66870.1 ASYMMETRIC LEAVES 2-like 1)

HSP 1 Score: 48.5 bits (114), Expect = 2.2e-06
Identity = 20/44 (45.45%), Postives = 25/44 (56.82%), Query Frame = 1 

Query: 32 AAFQTWTRAANEKCMLTPYFPPSKPLKFIIAHCIFGTSNIIKLL 76
          AA +   R   ++C+  PYFPP +P KF   H +FG SN+ KLL
Sbjct: 9  AACKFLRRKCTQECVFAPYFPPDQPQKFAFVHKVFGASNVAKLL 52

[Close]
BLAST of Csa4G129010 vs. NCBI nr
Match: gi|700198626|gb|KGN53784.1| (hypothetical protein Csa_4G129010 [Cucumis sativus])

HSP 1 Score: 159.1 bits (401), Expect = 3.3e-36
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1 

Query: 1  MTLAELGVLLDAEKKVISKQQASVEPQPKAMAAFQTWTRAANEKCMLTPYFPPSKPLKFI 60
          MTLAELGVLLDAEKKVISKQQASVEPQPKAMAAFQTWTRAANEKCMLTPYFPPSKPLKFI
Sbjct: 1  MTLAELGVLLDAEKKVISKQQASVEPQPKAMAAFQTWTRAANEKCMLTPYFPPSKPLKFI 60

Query: 61 IAHCIFGTSNIIKLLLVLL 80
          IAHCIFGTSNIIKLLLVLL
Sbjct: 61 IAHCIFGTSNIIKLLLVLL 79

[Close]
BLAST of Csa4G129010 vs. NCBI nr
Match: gi|922550089|ref|XP_013603026.1| (PREDICTED: LOB domain-containing protein 1-like [Brassica oleracea var. oleracea])

HSP 1 Score: 65.5 bits (158), Expect = 4.9e-08
Identity = 34/69 (49.28%), Postives = 42/69 (60.87%), Query Frame = 1 

Query: 11 DAEKKVISKQQASVEPQPKAM----AAFQTWTRAANEKCMLTPYFPPSKPLKFIIAHCIF 70
          DA   +I    AS  P P+ +    AA +   R   EKC+L PYFPP++P KF IAH +F
Sbjct: 9  DASAAIIYASPASSPPPPRVVLSPCAACKILRRRCGEKCVLAPYFPPTEPAKFSIAHRVF 68

Query: 71 GTSNIIKLL 76
          G SNIIKLL
Sbjct: 69 GASNIIKLL 77

[Close]
BLAST of Csa4G129010 vs. NCBI nr
Match: gi|685369049|ref|XP_009118406.1| (PREDICTED: LOB domain-containing protein 1-like [Brassica rapa])

HSP 1 Score: 65.5 bits (158), Expect = 4.9e-08
Identity = 34/69 (49.28%), Postives = 42/69 (60.87%), Query Frame = 1 

Query: 11 DAEKKVISKQQASVEPQPKAM----AAFQTWTRAANEKCMLTPYFPPSKPLKFIIAHCIF 70
          DA   +I    AS  P P+ +    AA +   R   EKC+L PYFPP++P KF IAH +F
Sbjct: 9  DASAAIIYASPASSPPPPRVVLSPCAACKILRRRCGEKCVLAPYFPPTEPAKFSIAHRVF 68

Query: 71 GTSNIIKLL 76
          G SNIIKLL
Sbjct: 69 GASNIIKLL 77

[Close]
BLAST of Csa4G129010 vs. NCBI nr
Match: gi|674910511|emb|CDY22713.1| (BnaC08g43470D [Brassica napus])

HSP 1 Score: 65.5 bits (158), Expect = 4.9e-08
Identity = 34/69 (49.28%), Postives = 42/69 (60.87%), Query Frame = 1 

Query: 11 DAEKKVISKQQASVEPQPKAM----AAFQTWTRAANEKCMLTPYFPPSKPLKFIIAHCIF 70
          DA   +I    AS  P P+ +    AA +   R   EKC+L PYFPP++P KF IAH +F
Sbjct: 9  DASAAIIYASPASSPPPPRVVLSPCAACKILRRRCGEKCVLAPYFPPTEPAKFSIAHRVF 68

Query: 71 GTSNIIKLL 76
          G SNIIKLL
Sbjct: 69 GASNIIKLL 77

[Close]
BLAST of Csa4G129010 vs. NCBI nr
Match: gi|674927092|emb|CDY06285.1| (BnaA09g49180D [Brassica napus])

HSP 1 Score: 65.5 bits (158), Expect = 4.9e-08
Identity = 34/69 (49.28%), Postives = 42/69 (60.87%), Query Frame = 1 

Query: 11 DAEKKVISKQQASVEPQPKAM----AAFQTWTRAANEKCMLTPYFPPSKPLKFIIAHCIF 70
          DA   +I    AS  P P+ +    AA +   R   EKC+L PYFPP++P KF IAH +F
Sbjct: 9  DASAAIIYASPASSPPPPRVVLSPCAACKILRRRCGEKCVLAPYFPPTEPAKFSIAHRVF 68

Query: 71 GTSNIIKLL 76
          G SNIIKLL
Sbjct: 69 GASNIIKLL 77

The following BLAST results are available for this feature:
BLAST of Csa4G129010 vs. Swiss-Prot
Match NameE-valueIdentityDescription
LBD11_ARATH1.4e-0751.85LOB domain-containing protein 11 OS=Arabidopsis thaliana GN=LBD11 PE=2 SV=2[more]
LBD1_ARATH4.2e-0756.82LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1[more]
BLAST of Csa4G129010 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KY54_CUCSA2.3e-36100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G129010 PE=4 SV=1[more]
A0A078EW60_BRANA3.4e-0849.28BnaA09g49180D protein OS=Brassica napus GN=BnaA09g49180D PE=4 SV=1[more]
A0A078GDJ4_BRANA3.4e-0849.28BnaC08g43470D protein OS=Brassica napus GN=BnaC08g43470D PE=4 SV=1[more]
M4ES21_BRARP3.4e-0849.28Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1[more]
A0A0D3DYI0_BRAOL3.4e-0849.28Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1[more]
BLAST of Csa4G129010 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G28500.18.1e-0951.85 LOB domain-containing protein 11[more]
AT1G07900.12.4e-0856.82 LOB domain-containing protein 1[more]
AT2G23660.17.6e-0745.45 LOB domain-containing protein 10[more]
AT5G66870.12.2e-0645.45 ASYMMETRIC LEAVES 2-like 1[more]
BLAST of Csa4G129010 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198626|gb|KGN53784.1|3.3e-36100.00hypothetical protein Csa_4G129010 [Cucumis sativus][more]
gi|922550089|ref|XP_013603026.1|4.9e-0849.28PREDICTED: LOB domain-containing protein 1-like [Brassica oleracea var. oleracea... [more]
gi|685369049|ref|XP_009118406.1|4.9e-0849.28PREDICTED: LOB domain-containing protein 1-like [Brassica rapa][more]
gi|674910511|emb|CDY22713.1|4.9e-0849.28BnaC08g43470D [Brassica napus][more]
gi|674927092|emb|CDY06285.1|4.9e-0849.28BnaA09g49180D [Brassica napus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004883LOB
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU111740cucumber EST collection version 3.0transcribed_cluster
CU155442cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G129010.1Csa4G129010.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU155442CU155442transcribed_cluster
CU111740CU111740transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004883Lateral organ boundaries, LOBPFAMPF03195DUF260coord: 33..75
score: 1.
IPR004883Lateral organ boundaries, LOBPROFILEPS50891LOBcoord: 29..79
score: 1
NoneNo IPR availablePANTHERPTHR31301FAMILY NOT NAMEDcoord: 43..75
score: 2.3
NoneNo IPR availablePANTHERPTHR31301:SF14LOB DOMAIN-CONTAINING PROTEIN 1-RELATEDcoord: 43..75
score: 2.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa4G129010CsGy4G009590Cucumber (Gy14) v2cgybcuB165
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G129010Watermelon (97103) v2cuwmbB295
Csa4G129010Watermelon (97103) v2cuwmbB314
Csa4G129010Watermelon (97103) v2cuwmbB324
Csa4G129010Wax gourdcuwgoB369
Csa4G129010Wax gourdcuwgoB413
Csa4G129010Wax gourdcuwgoB427
Csa4G129010Cucumber (Chinese Long) v2cucuB027
Csa4G129010Cucumber (Gy14) v1cgycuB141
Csa4G129010Cucumber (Gy14) v1cgycuB266
Csa4G129010Cucurbita maxima (Rimu)cmacuB262
Csa4G129010Cucurbita maxima (Rimu)cmacuB476
Csa4G129010Cucurbita moschata (Rifu)cmocuB247
Csa4G129010Cucurbita moschata (Rifu)cmocuB465
Csa4G129010Melon (DHL92) v3.5.1cumeB270
Csa4G129010Melon (DHL92) v3.5.1cumeB279
Csa4G129010Melon (DHL92) v3.5.1cumeB288
Csa4G129010Melon (DHL92) v3.5.1cumeB316
Csa4G129010Watermelon (Charleston Gray)cuwcgB298
Csa4G129010Watermelon (Charleston Gray)cuwcgB327
Csa4G129010Watermelon (97103) v1cuwmB306
Csa4G129010Watermelon (97103) v1cuwmB337
Csa4G129010Watermelon (97103) v1cuwmB357
Csa4G129010Cucurbita pepo (Zucchini)cpecuB567
Csa4G129010Cucurbita pepo (Zucchini)cpecuB617
Csa4G129010Bottle gourd (USVL1VR-Ls)culsiB272
Csa4G129010Bottle gourd (USVL1VR-Ls)culsiB302
Csa4G129010Bottle gourd (USVL1VR-Ls)culsiB313
Csa4G129010Cucumber (Gy14) v2cgybcuB029
Csa4G129010Melon (DHL92) v3.6.1cumedB264
Csa4G129010Melon (DHL92) v3.6.1cumedB273
Csa4G129010Melon (DHL92) v3.6.1cumedB300
Csa4G129010Silver-seed gourdcarcuB0721