Csa4G112620 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G112620
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr4 : 7193017 .. 7195429 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTCAATTCCCCATAGTGCTCTCACACAGGTCGTCGATTCCCCTCCTCCACTAGGCTCCTCCGCTCGGTGATAACTCAAGATGGTTATTGCGGTGAAGGCTTCTCCGTGAAGTTCCACCCACAGTGAAGGCTTCTCTGTCTGATGCTTCTTTGCAACGTTCTTTTCTTCAAAATCATCTCACTCATATCAAAACTCTCCTTCATCCGCCATCATCGTGCCCTCTCTCAGCCACTGCCCTCTCACTCTCCAAATCGCCGGCCATCTCCTACCTTTGTTGTCAATGGCGGTCTTTTAGGTATTTATGGATCTAATCTTTACTCTTTGTACTTTTCTCTGAGTAAGTCATCCCAAAAAAGATAGTTTTATGGTATTTGAGTAAAGCTTTAGGCTATTTGCTAAATTGCAAAGTGGTTTCTAGACACAAAATCTCATGGTCGAAATTTAATAAGAATCGAGTTCTTGCTCCTGCCGATTTTTTCAATTAAACTTGAAACTCAATTCTCAACATTGCATCTATGATATGTTCTTCACAAATTTTTGTATTTATTCCTTAATTTTTCTAGTTTTCTGGCNNNNNNNNNNNNNNNNNNNNNNNNNCTTTCTCAGATTCGTTCCACCTCTTATCCTCATTTCCAAAAGGCAATTGTAATTTCTTCATCCCTTATTATTACTTGAATAAAGCTTTAGGCTATTTGCTAGATTGCAAAGTGGTTTCTGGATACAAAATCCCATGGTCGAAATTTAAGAAGAATCGAGTTCTTGCTCCTGCCGATTTTTTCAATTAAACTTGAAACTCAATTCTCAACATTGCATCTAAGATATGTTCTTCACAAATTTTTGTATTTATTCCTTAATTTTTCTAGATTTCTGGCTGCCACTAAGTAAATGAATATTCTTTCTTTTGTGTTGCCCACCAATTGTTTGATGAAATGCCCATGGGAGGAAATCTTGATTATTGAATGTACATAGGAGGAAATCATTTTAGAATGTTATTATAGTGGAATCCTGGTGAACTAGATTTTATTTTAATGGTTCTAATTTTATTAGTTAACTTTCTTTTGAGGTAGGGGATAAGACCCTTTGAATAAAATTTTGATTAGTTAAAACATAATCTTGATTGTTTATGATTAGTTAACATGTTTTTGCTTGGAGAATATTGACTTTTTGTTGATACTTAAATCATGTTCTTAGTGATGGTGCCAGTTCCTTTCCATTTCCTTACTCCCTCTCTCTTGTGTATGTGTTTACTTTGATCAATTAATGTGGTACATATCTGGTGGTATTTTATTTAGGTTCGTAATTTTGGGCTTTCACGCTTGAAGTCGTACACATTTCTTTCATCAAAATCAGCTGCTAGGATTGTAAGTTATTGTGTATGTGGCAGGACTGTCTTGTATACATAAAAGATAGTTTGTATTGTAATTGTTCTTGAAATAATGAACGGAGGTCACTATTCTAATTACATTTCATACTATTACTATTTCTGTTTTTTTTTCTTTTTTCTCAGCTCCATAACATAACCTCACTCAAGTCTTGTGTGTAGTGAATGGACCTAATTAAAATTAGGTGCTTGTCTTGCAATCTTTTTAAATATGCAATATTTTCTAACAACACAAATTGGGCAGATTTTCATTCGATCCTACTGAGGGTTAAATGTTGCGTTGTGCATCTATACATGGTATGCTTTTCTCTTTCCTTTTGTCCTCCACACTTCTTTTTCAATTACACCATTTGAGATATATTTTTCTTTAACTGATTTCTAAGTTAAAAGGAATGTGTTTCTTGGTTATTCATTTCGCTGTGTTGTTGTAATCACATAACTCCAATTGGACAAGGTGATGAAGGAAAAGTAAAATTGTTCAAATATTGGGATACTTCATTTAATTTTATCTATATTTGATTATAAAAAAAAAATTGTAAAGGGTTCGACATAATTATACAGACTTTATAGTTATGCTAGTTGATTATGAATTCAAAATACTTACATCCTAGGGAAGTTGAGATGTCCAACCAGTCCATTCCATGTTGTATGACACACAATATTCACAGTTCCAATCTTTATGATATTCCATTTATTTTTGCTTCCGACTTGTTCACCATCAATCTGACTCATCTACATTATGTTACTTGGTCTTCACAAAGTTATTTTATTAGCTAGTTTATATTATTTTATGTTTTTGAAACATCAAGATGAACGAGGCTCAATTAGCTAGTTTATATTATTTTATGTATGTAATGTGAACGCTTAGTATATTTGTTTTTCATTCAATTATTTTAAATTAACGATTTTTGTCCAGGTATACACCTATATCAGATCCTGATGCAAGGGGATACTTTGATTTCCTAATTAAGGTATATTTTTCTTCACCATCTTTTAGAATTTTCAAATCAAGAGAAAAAATAATTAA

mRNA sequence

ATGTCGTCAATTCCCCATAGTGCTCTCACACAGGTCGTCGATTCCCCTCCTCCACTAGGCTCCTCCGCTCGGCTTCTCCGTGAAGTTCCACCCACAGTGAAGGCTTCTCTGTCTGATGCTTCTTTGCAACGTTCTTTTCTTCAAAATCATCTCACTCATATCAAAACTCTCCTTCATCCGCCATCATCGTGCCCTCTCTCAGCCACTGCCCTCTCACTCTCCAAATCGCCGGCCATCTCCTACCTTTGTTGTCAATGGCGGTATACACCTATATCAGATCCTGATGCAAGGGGATACTTTGATTTCCTAATTAAGAATTTTCAAATCAAGAGAAAAAATAATTAA

Coding sequence (CDS)

ATGTCGTCAATTCCCCATAGTGCTCTCACACAGGTCGTCGATTCCCCTCCTCCACTAGGCTCCTCCGCTCGGCTTCTCCGTGAAGTTCCACCCACAGTGAAGGCTTCTCTGTCTGATGCTTCTTTGCAACGTTCTTTTCTTCAAAATCATCTCACTCATATCAAAACTCTCCTTCATCCGCCATCATCGTGCCCTCTCTCAGCCACTGCCCTCTCACTCTCCAAATCGCCGGCCATCTCCTACCTTTGTTGTCAATGGCGGTATACACCTATATCAGATCCTGATGCAAGGGGATACTTTGATTTCCTAATTAAGAATTTTCAAATCAAGAGAAAAAATAATTAA

Protein sequence

MSSIPHSALTQVVDSPPPLGSSARLLREVPPTVKASLSDASLQRSFLQNHLTHIKTLLHPPSSCPLSATALSLSKSPAISYLCCQWRYTPISDPDARGYFDFLIKNFQIKRKNN*

Homology

[Close]

BLAST of Csa4G112620 vs. TrEMBL
Match: A0A0A0KVX9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G112620 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 1.4e-58
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1


Query: 1   MSSIPHSALTQVVDSPPPLGSSARLLREVPPTVKASLSDASLQRSFLQNHLTHIKTLLHP 60
           MSSIPHSALTQVVDSPPPLGSSARLLREVPPTVKASLSDASLQRSFLQNHLTHIKTLLHP
Sbjct: 1   MSSIPHSALTQVVDSPPPLGSSARLLREVPPTVKASLSDASLQRSFLQNHLTHIKTLLHP 60

Query: 61  PSSCPLSATALSLSKSPAISYLCCQWRYTPISDPDARGYFDFLIKNFQIKRKNN 115
           PSSCPLSATALSLSKSPAISYLCCQWRYTPISDPDARGYFDFLIKNFQIKRKNN
Sbjct: 61  PSSCPLSATALSLSKSPAISYLCCQWRYTPISDPDARGYFDFLIKNFQIKRKNN 114

[Close]

BLAST of Csa4G112620 vs. NCBI nr
Match: gi|700198570|gb|KGN53728.1| (hypothetical protein Csa_4G112620 [Cucumis sativus])

HSP 1 Score: 233.4 bits (594), Expect = 2.0e-58
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1


Query: 1   MSSIPHSALTQVVDSPPPLGSSARLLREVPPTVKASLSDASLQRSFLQNHLTHIKTLLHP 60
           MSSIPHSALTQVVDSPPPLGSSARLLREVPPTVKASLSDASLQRSFLQNHLTHIKTLLHP
Sbjct: 1   MSSIPHSALTQVVDSPPPLGSSARLLREVPPTVKASLSDASLQRSFLQNHLTHIKTLLHP 60

Query: 61  PSSCPLSATALSLSKSPAISYLCCQWRYTPISDPDARGYFDFLIKNFQIKRKNN 115
           PSSCPLSATALSLSKSPAISYLCCQWRYTPISDPDARGYFDFLIKNFQIKRKNN
Sbjct: 61  PSSCPLSATALSLSKSPAISYLCCQWRYTPISDPDARGYFDFLIKNFQIKRKNN 114

[Close]

BLAST of Csa4G112620 vs. NCBI nr
Match: gi|778688386|ref|XP_011652738.1| (PREDICTED: uncharacterized protein LOC105435074 [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 2.6e-10
Identity = 39/56 (69.64%), Postives = 41/56 (73.21%), Query Frame = 1


Query: 32 TVKASLSDASLQRSFLQNHLTHIKTLLHPPSSCPLSATALSLSKSPAISYLCCQWR 88
          TVKAS SDASLQ SFL N  THIKTLL PPS CP+S  ALSL + P ISYL   WR
Sbjct: 31 TVKASPSDASLQCSFLHNCFTHIKTLLRPPSLCPISLIALSLFRLPTISYLHRLWR 86

The following BLAST results are available for this feature:

BLAST of Csa4G112620 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVX9_CUCSA	1.4e-58	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G112620 PE=4 SV=1	[more]

BLAST of Csa4G112620 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198570\|gb\|KGN53728.1\|	2.0e-58	100.00	hypothetical protein Csa_4G112620 [Cucumis sativus]	[more]
gi\|778688386\|ref\|XP_011652738.1\|	2.6e-10	69.64	PREDICTED: uncharacterized protein LOC105435074 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU104443	cucumber EST collection version 3.0	transcribed_cluster
CU123141	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa4G112620.1	Csa4G112620.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU104443	CU104443	transcribed_cluster
CU123141	CU123141	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:2.40.30.10		coord: 87..107 score: 2.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa4G112620	CSPI04G09430	Wild cucumber (PI 183967)	cpicuB182

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa4G112620	Silver-seed gourd	carcuB0406
Csa4G112620	Silver-seed gourd	carcuB0887
Csa4G112620	Watermelon (97103) v2	cuwmbB272
Csa4G112620	Wax gourd	cuwgoB358
Csa4G112620	Cucumber (Gy14) v1	cgycuB556
Csa4G112620	Cucurbita maxima (Rimu)	cmacuB334
Csa4G112620	Cucurbita maxima (Rimu)	cmacuB718
Csa4G112620	Cucurbita moschata (Rifu)	cmocuB326
Csa4G112620	Cucurbita moschata (Rifu)	cmocuB710
Csa4G112620	Melon (DHL92) v3.5.1	cumeB315
Csa4G112620	Watermelon (Charleston Gray)	cuwcgB272
Csa4G112620	Watermelon (97103) v1	cuwmB293
Csa4G112620	Cucurbita pepo (Zucchini)	cpecuB222
Csa4G112620	Cucurbita pepo (Zucchini)	cpecuB411
Csa4G112620	Bottle gourd (USVL1VR-Ls)	culsiB276
Csa4G112620	Cucumber (Gy14) v2	cgybcuB165
Csa4G112620	Melon (DHL92) v3.6.1	cumedB302