Csa4G110040 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G110040
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 7083586 .. 7084375 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAACCTACAAAGGAAGGTAAAAAAAACTTTGCTTCTTTTCTTTTCTTTTTTTCTTCTTCTTCCTTGATTTTTCTTCCCTCTTTTATTTTTAAAATTTTAACTTCTGCTTTTTCTTTTCTTTTTTTTTTTTTGCTTCCACACATTTTCAAAAGGTAAGATTTTTCCTCTGGTCTATTTTTGTGTTATGTATATTTTGAACTTTTGCAGGGGTGACCTCCTTTTAGCTTTGCCATCAGCGATCCCACTCTTACTACGAACAATTGGGCACCATTACTTTTCCATCAACAATTCCACCTCTACTAGGAACGATCAGGCACCTTACTCTGCAGTCAGTGATCTCACTTCTACTAGAAACAATTGGACATCTTTACTTTATCGTCAGTGATCCCACTTCTAGTAAGAACAATCATACATCTTTACCTGTCGTCAGCGATTCCACTTCTACTAGGAACACTACAAGAAATAGACTTTTTCCCGATGCATAAAGACGTGTTGGACAAGACTACCAAGTACGTCGAAAAAGGTTCTCTAGACGCAGGACTACATGTTTGGGAAGACCGTAAAAAAAACGTCATGAGACATATTTTCAACATGTGAATGTGTTGACATTGGGAATAGGGTACACCCGACACTGATGTAGTCAATGTCGGGAATAGGGTATTCATGACGTCATGGTCTAGCATCAGGATTGGCGCTTCCCTGATGTTGCGTCAGAATACTCTTTCCCCAGTGTCGTTCTTCAAGCGTCAGGAATACGTGACGAAACCTGATGTAAAGTGGCATTAG

mRNA sequence

ATGCAAACCTACAAAGGAAGGGGTGACCTCCTTTTAGCTTTGCCATCAGCGATCCCACTCTTACTACGAACAATTGGGCACCATTACTTTTCCATCAACAATTCCACCTCTACTAGGAACGATCAGGCACCTTACTCTGCAGTCACGATTCCACTTCTACTAGGAACACTACAAGAAATAGACTTTTTCCCGATGCATAAAGACGTGTTGGACAAGACTACCAAGTACGTCGAAAAAGGTTCTCTAGACGCAGGACTACATGGTACACCCGACACTGATGTAGTCAATGTCGGGAATAGGGTATTCATGACGTCATGGTCTAGCATCAGGATTGGCGCTTCCCTGATGTTGCGTCAGAATACTCTTTCCCCAGTGTCGTTCTTCAAGCGTCAGGAATACGTGACGAAACCTGATGTAAAGTGGCATTAG

Coding sequence (CDS)

ATGCAAACCTACAAAGGAAGGGGTGACCTCCTTTTAGCTTTGCCATCAGCGATCCCACTCTTACTACGAACAATTGGGCACCATTACTTTTCCATCAACAATTCCACCTCTACTAGGAACGATCAGGCACCTTACTCTGCAGTCACGATTCCACTTCTACTAGGAACACTACAAGAAATAGACTTTTTCCCGATGCATAAAGACGTGTTGGACAAGACTACCAAGTACGTCGAAAAAGGTTCTCTAGACGCAGGACTACATGGTACACCCGACACTGATGTAGTCAATGTCGGGAATAGGGTATTCATGACGTCATGGTCTAGCATCAGGATTGGCGCTTCCCTGATGTTGCGTCAGAATACTCTTTCCCCAGTGTCGTTCTTCAAGCGTCAGGAATACGTGACGAAACCTGATGTAAAGTGGCATTAG

Protein sequence

MQTYKGRGDLLLALPSAIPLLLRTIGHHYFSINNSTSTRNDQAPYSAVTIPLLLGTLQEIDFFPMHKDVLDKTTKYVEKGSLDAGLHGTPDTDVVNVGNRVFMTSWSSIRIGASLMLRQNTLSPVSFFKRQEYVTKPDVKWH*
Homology
[Close]
BLAST of Csa4G110040 vs. TrEMBL
Match: A0A0A0KZB1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G110040 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 1.5e-75
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1 

Query: 1   MQTYKGRGDLLLALPSAIPLLLRTIGHHYFSINNSTSTRNDQAPYSAVTIPLLLGTLQEI 60
           MQTYKGRGDLLLALPSAIPLLLRTIGHHYFSINNSTSTRNDQAPYSAVTIPLLLGTLQEI
Sbjct: 1   MQTYKGRGDLLLALPSAIPLLLRTIGHHYFSINNSTSTRNDQAPYSAVTIPLLLGTLQEI 60

Query: 61  DFFPMHKDVLDKTTKYVEKGSLDAGLHGTPDTDVVNVGNRVFMTSWSSIRIGASLMLRQN 120
           DFFPMHKDVLDKTTKYVEKGSLDAGLHGTPDTDVVNVGNRVFMTSWSSIRIGASLMLRQN
Sbjct: 61  DFFPMHKDVLDKTTKYVEKGSLDAGLHGTPDTDVVNVGNRVFMTSWSSIRIGASLMLRQN 120

Query: 121 TLSPVSFFKRQEYVTKPDVKWH 143
           TLSPVSFFKRQEYVTKPDVKWH
Sbjct: 121 TLSPVSFFKRQEYVTKPDVKWH 142

[Close]
BLAST of Csa4G110040 vs. NCBI nr
Match: gi|700198559|gb|KGN53717.1| (hypothetical protein Csa_4G110040 [Cucumis sativus])

HSP 1 Score: 290.0 bits (741), Expect = 2.2e-75
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1 

Query: 1   MQTYKGRGDLLLALPSAIPLLLRTIGHHYFSINNSTSTRNDQAPYSAVTIPLLLGTLQEI 60
           MQTYKGRGDLLLALPSAIPLLLRTIGHHYFSINNSTSTRNDQAPYSAVTIPLLLGTLQEI
Sbjct: 1   MQTYKGRGDLLLALPSAIPLLLRTIGHHYFSINNSTSTRNDQAPYSAVTIPLLLGTLQEI 60

Query: 61  DFFPMHKDVLDKTTKYVEKGSLDAGLHGTPDTDVVNVGNRVFMTSWSSIRIGASLMLRQN 120
           DFFPMHKDVLDKTTKYVEKGSLDAGLHGTPDTDVVNVGNRVFMTSWSSIRIGASLMLRQN
Sbjct: 61  DFFPMHKDVLDKTTKYVEKGSLDAGLHGTPDTDVVNVGNRVFMTSWSSIRIGASLMLRQN 120

Query: 121 TLSPVSFFKRQEYVTKPDVKWH 143
           TLSPVSFFKRQEYVTKPDVKWH
Sbjct: 121 TLSPVSFFKRQEYVTKPDVKWH 142

The following BLAST results are available for this feature:
BLAST of Csa4G110040 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZB1_CUCSA1.5e-75100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G110040 PE=4 SV=1[more]
BLAST of Csa4G110040 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198559|gb|KGN53717.1|2.2e-75100.00hypothetical protein Csa_4G110040 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU104443cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G110040.1Csa4G110040.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU104443CU104443transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa4G110040CsGy4G009090Cucumber (Gy14) v2cgybcuB165
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G110040Wax gourdcuwgoB358
Csa4G110040Cucumber (Gy14) v1cgycuB556
Csa4G110040Cucurbita maxima (Rimu)cmacuB334
Csa4G110040Cucurbita maxima (Rimu)cmacuB712
Csa4G110040Cucurbita moschata (Rifu)cmocuB326
Csa4G110040Cucurbita moschata (Rifu)cmocuB702
Csa4G110040Melon (DHL92) v3.5.1cumeB315
Csa4G110040Watermelon (Charleston Gray)cuwcgB272
Csa4G110040Watermelon (97103) v1cuwmB293
Csa4G110040Cucurbita pepo (Zucchini)cpecuB222
Csa4G110040Cucurbita pepo (Zucchini)cpecuB403
Csa4G110040Bottle gourd (USVL1VR-Ls)culsiB276
Csa4G110040Melon (DHL92) v3.6.1cumedB302
Csa4G110040Silver-seed gourdcarcuB0404
Csa4G110040Silver-seed gourdcarcuB0887
Csa4G110040Watermelon (97103) v2cuwmbB272