Csa4G052680 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G052680
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 4421575 .. 4421763 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGTTGAGACGTTTGAGGAATCTGAGACAGATGTTAGTCCTCATTCTGAAAATCATATGCAACTGATAAACGATCATATATCGATTGCAACAAATGTTGAATGTCCGTTTAGTGTAGAATCAAGTGAAGAAAGAGGACATGTGGGTGATAGAAACCCAACTCGGGATGATCAGTCGATGTGTTAG

mRNA sequence

ATGGATGTTGAGACGTTTGAGGAATCTGAGACAGATGTTAGTCCTCATTCTGAAAATCATATGCAACTGATAAACGATCATATATCGATTGCAACAAATGTTGAATGTCCGTTTAGTGTAGAATCAAGTGAAGAAAGAGGACATGTGGGTGATAGAAACCCAACTCGGGATGATCAGTCGATGTGTTAG

Coding sequence (CDS)

ATGGATGTTGAGACGTTTGAGGAATCTGAGACAGATGTTAGTCCTCATTCTGAAAATCATATGCAACTGATAAACGATCATATATCGATTGCAACAAATGTTGAATGTCCGTTTAGTGTAGAATCAAGTGAAGAAAGAGGACATGTGGGTGATAGAAACCCAACTCGGGATGATCAGTCGATGTGTTAG

Protein sequence

MDVETFEESETDVSPHSENHMQLINDHISIATNVECPFSVESSEERGHVGDRNPTRDDQSMC*
Homology
[Close]
BLAST of Csa4G052680 vs. TrEMBL
Match: A0A0A0KV41_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G052680 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.8e-28
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1 

Query: 1  MDVETFEESETDVSPHSENHMQLINDHISIATNVECPFSVESSEERGHVGDRNPTRDDQS 60
          MDVETFEESETDVSPHSENHMQLINDHISIATNVECPFSVESSEERGHVGDRNPTRDDQS
Sbjct: 1  MDVETFEESETDVSPHSENHMQLINDHISIATNVECPFSVESSEERGHVGDRNPTRDDQS 60

Query: 61 MC 63
          MC
Sbjct: 61 MC 62

[Close]
BLAST of Csa4G052680 vs. NCBI nr
Match: gi|700198260|gb|KGN53418.1| (hypothetical protein Csa_4G052680 [Cucumis sativus])

HSP 1 Score: 132.5 bits (332), Expect = 2.6e-28
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1 

Query: 1  MDVETFEESETDVSPHSENHMQLINDHISIATNVECPFSVESSEERGHVGDRNPTRDDQS 60
          MDVETFEESETDVSPHSENHMQLINDHISIATNVECPFSVESSEERGHVGDRNPTRDDQS
Sbjct: 1  MDVETFEESETDVSPHSENHMQLINDHISIATNVECPFSVESSEERGHVGDRNPTRDDQS 60

Query: 61 MC 63
          MC
Sbjct: 61 MC 62

The following BLAST results are available for this feature:
BLAST of Csa4G052680 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KV41_CUCSA1.8e-28100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G052680 PE=4 SV=1[more]
BLAST of Csa4G052680 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198260|gb|KGN53418.1|2.6e-28100.00hypothetical protein Csa_4G052680 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G052680.1Csa4G052680.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa4G052680CSPI04G06490Wild cucumber (PI 183967)cpicuB182
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G052680Watermelon (97103) v2cuwmbB269
Csa4G052680Watermelon (97103) v2cuwmbB311
Csa4G052680Watermelon (97103) v2cuwmbB321
Csa4G052680Wax gourdcuwgoB363
Csa4G052680Wax gourdcuwgoB365
Csa4G052680Cucumber (Chinese Long) v2cucuB093
Csa4G052680Cucumber (Chinese Long) v2cucuB141
Csa4G052680Cucumber (Gy14) v1cgycuB146
Csa4G052680Cucumber (Gy14) v1cgycuB433
Csa4G052680Cucurbita maxima (Rimu)cmacuB337
Csa4G052680Cucurbita maxima (Rimu)cmacuB713
Csa4G052680Cucurbita moschata (Rifu)cmocuB325
Csa4G052680Cucurbita moschata (Rifu)cmocuB705
Csa4G052680Melon (DHL92) v3.5.1cumeB276
Csa4G052680Melon (DHL92) v3.5.1cumeB312
Csa4G052680Watermelon (Charleston Gray)cuwcgB289
Csa4G052680Watermelon (Charleston Gray)cuwcgB324
Csa4G052680Watermelon (97103) v1cuwmB325
Csa4G052680Watermelon (97103) v1cuwmB305
Csa4G052680Watermelon (97103) v1cuwmB330
Csa4G052680Cucurbita pepo (Zucchini)cpecuB221
Csa4G052680Cucurbita pepo (Zucchini)cpecuB406
Csa4G052680Bottle gourd (USVL1VR-Ls)culsiB298
Csa4G052680Bottle gourd (USVL1VR-Ls)culsiB304
Csa4G052680Cucumber (Gy14) v2cgybcuB124
Csa4G052680Cucumber (Gy14) v2cgybcuB165
Csa4G052680Cucumber (Gy14) v2cgybcuB222
Csa4G052680Melon (DHL92) v3.6.1cumedB257
Csa4G052680Melon (DHL92) v3.6.1cumedB281
Csa4G052680Melon (DHL92) v3.6.1cumedB301
Csa4G052680Silver-seed gourdcarcuB0044
Csa4G052680Silver-seed gourdcarcuB0677