Csa4G043850 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G043850
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Homeobox-leucine zipper protein; contains IPR009057 (Homeodomain-like)
Location	Chr4 : 3359830 .. 3361779 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAACTAGAAAGAGAAAAACAGAGTAATACAACAAAACCAAACCAAAACTATGAACCAACAACAAACTGATCAAGAACATCAATCAGTACAAATCTCTCAGTTGTACAATGGATTATACATCCAAATGCTACCCCAACAAGGTTTGTACCCTTCTTTTTTGTTAAAGGGTTTTTGCCTCTTTTTGGTAAAATTTACCCAAATACTCTTTTCTTTTTTCCTCTTTTCTTCTATGAATTGAACCTCATTTTTTTAAGCATTTTAGTTCATTTGGGCGAGTCTAAACCGAGACGACGTCGTAAGAAGAACAGAGGATCCGAAACAGAGGCAGCGTCGGGTGGGAAAAAGAGGAAGCTGACGGCGGCGCAAGTTCGTCTTTTGGAGTCCAATTTTGGTAGTGAACATAAATTGGAATCGGAAAGAAAGGACCGGTTAGCGTCGGAGTTGGGGTTGGATCCCCGGCAGGTGGCTGTGTGGTTTCAGAACCGCCGTGCACGGTGGAAGAATAAGAAACTTGAGGAGGAGTATTCTAATTTGAAGAAGCTTCATGAATCCGTCGTCGTTGAAAAATGCCGTCTTGAAACAGAGGTTTGTTTCACTGTCTCTTTAATCTTCTTTCATCCTTAATTGAATCTAAACCATTTTCTTTACTGTTATCTAATTTAATTAGTTTAAGGCAGAAAATGGGAGAAGATGGGAGAAAACTTCTAACACTATCATCAATAATTCAGATTTGGTATCATTTAATAATAATGTATTAGTTAATCGATTAGTTTTCAAAACAATACATAATTCAATTATATATTCAGTTCAAATTAATTAACCATACATCCCAAACTAAAAAGAAACTGATTTTGGTTCATCGAAAGTTGATTTGATATTTCTTTTTAGAAACTTTCAATTTTCTATTCCTGCATGTGTTATTAAAAAGTTATGTGTACAGTACTGAAGACCAAGTGAATATTACTTCAGATTAGACATATATCTTAAACACTAATTACCATTTAACACTTGGTACCTACACAAAAAAGGGTGGAAACAAAAAAGAAAAGAAAGAGTGGAGGAGAAAAGGTGGGTAACTTTGGGTGAAAAAGAGAGGAGTGGACCAACATGAATGAACGTGCATGGGCTCTTGGCTCGAAGAAACCCCCACCCCACTTTGTTTTACAATCAGGTGGCAAATATATATATATACTTATATATTTATTTTCTTTTAGTAAAGAGAAAAGAAAATGGTTTGACAGAACTTTTGATAAGCCAATTGCCTTACAACACCCACCACCACCTCATTCCTCAACTATATAAATTTTAAAATTACAAAGTGAGTAATAAAGTTATTTCGTACTATGTTGTCTGTGTTTCTATGGGCCATCACCCCACTCTGGTGCCTCTCACTTCTCACTTTAACATTTCACTTATCAACACTAAATTCTATCTCCCACTTACTTCCTACTACAACACTACACCGTATCTAAATGTTAAAAGAAAATATTCATTTCAGTAGCTATTTTGTTTCTTTTTCTAATCTCTTGTTTTGTTTTGTTTTGTTTTTTCTTCATATTTGAATTGTTTTTAGAATAATTTGAAAATAGTACGTTTGGGTTGAATTTTTTCATAATATTTTTTTGTACCCATATGAAAATAGAATTAGCTACTAAATAATATTTTTCAAAATAAAATGATGCAGCTGTTGAAGCTAAAAGAGCAACTATTAGAAGTAGAGAAAGAGAAAGAGAGGGTAAGAATGGGAGAAGGGGGTGATGGGCCATTAAGTAGTAGTAGCCCAAGCCCATCAATGTCAATGGAAGCTATGGAGATGGAGCAACCCATATCCCTTGGGGAAATTTCACCATTATATGAAGAAGATGTGTTTTATTACATGCCTGAAAATTATTGTATTTATGGCATGGAATGGCCTAATCCCTACCTTTGATATTCCTATTTAATTCTTC

mRNA sequence

ATGAACCAACAACAAACTGATCAAGAACATCAATCAGTACAAATCTCTCAGTTGTACAATGGATTATACATCCAAATGCTACCCCAACAAGTTCATTTGGGCGAGTCTAAACCGAGACGACGTCGTAAGAAGAACAGAGGATCCGAAACAGAGGCAGCGTCGGGTGGGAAAAAGAGGAAGCTGACGGCGGCGCAAGTTCGTCTTTTGGAGTCCAATTTTGGTAGTGAACATAAATTGGAATCGGAAAGAAAGGACCGGTTAGCGTCGGAGTTGGGGTTGGATCCCCGGCAGGTGGCTGTGTGGTTTCAGAACCGCCGTGCACGGTGGAAGAATAAGAAACTTGAGGAGGAGTATTCTAATTTGAAGAAGCTTCATGAATCCGTCGTCGTTGAAAAATGCCGTCTTGAAACAGAGCTGTTGAAGCTAAAAGAGCAACTATTAGAAGTAGAGAAAGAGAAAGAGAGGGTAAGAATGGGAGAAGGGGGTGATGGGCCATTAAGTAGTAGTAGCCCAAGCCCATCAATGTCAATGGAAGCTATGGAGATGGAGCAACCCATATCCCTTGGGGAAATTTCACCATTATATGAAGAAGATGTGTTTTATTACATGCCTGAAAATTATTGTATTTATGGCATGGAATGGCCTAATCCCTACCTTTGA

Coding sequence (CDS)

ATGAACCAACAACAAACTGATCAAGAACATCAATCAGTACAAATCTCTCAGTTGTACAATGGATTATACATCCAAATGCTACCCCAACAAGTTCATTTGGGCGAGTCTAAACCGAGACGACGTCGTAAGAAGAACAGAGGATCCGAAACAGAGGCAGCGTCGGGTGGGAAAAAGAGGAAGCTGACGGCGGCGCAAGTTCGTCTTTTGGAGTCCAATTTTGGTAGTGAACATAAATTGGAATCGGAAAGAAAGGACCGGTTAGCGTCGGAGTTGGGGTTGGATCCCCGGCAGGTGGCTGTGTGGTTTCAGAACCGCCGTGCACGGTGGAAGAATAAGAAACTTGAGGAGGAGTATTCTAATTTGAAGAAGCTTCATGAATCCGTCGTCGTTGAAAAATGCCGTCTTGAAACAGAGCTGTTGAAGCTAAAAGAGCAACTATTAGAAGTAGAGAAAGAGAAAGAGAGGGTAAGAATGGGAGAAGGGGGTGATGGGCCATTAAGTAGTAGTAGCCCAAGCCCATCAATGTCAATGGAAGCTATGGAGATGGAGCAACCCATATCCCTTGGGGAAATTTCACCATTATATGAAGAAGATGTGTTTTATTACATGCCTGAAAATTATTGTATTTATGGCATGGAATGGCCTAATCCCTACCTTTGA

Protein sequence

MNQQQTDQEHQSVQISQLYNGLYIQMLPQQVHLGESKPRRRRKKNRGSETEAASGGKKRKLTAAQVRLLESNFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKLHESVVVEKCRLETELLKLKEQLLEVEKEKERVRMGEGGDGPLSSSSPSPSMSMEAMEMEQPISLGEISPLYEEDVFYYMPENYCIYGMEWPNPYL*

Homology

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BLAST of Csa4G043850 vs. Swiss-Prot
Match: ATB40_ARATH (Homeobox-leucine zipper protein ATHB-40 OS=Arabidopsis thaliana GN=ATHB-40 PE=2 SV=3)

HSP 1 Score: 195.3 bits (495), Expect = 7.1e-49
Identity = 114/211 (54.03%), Postives = 144/211 (68.25%), Query Frame = 1


Query: 15  ISQLYNGLYIQMLPQQVHLGESK-PRRRRKKNRGSETEAASGG---KKRKLTAAQVRLLE 74
           ISQLY  +Y Q+    V  GE K P+RRRKK +GS   A  G    +KRKLT  QV +LE
Sbjct: 13  ISQLYPDVYTQI----VQPGEVKQPKRRRKKTKGSVASADGGNGLFRKRKLTDEQVNMLE 72

Query: 75  SNFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKLHESVVV 134
            +FG EHKLESERKDRLA+ELGLDPRQVAVWFQNRRARWKNK+LEEEY+ LK  H++VVV
Sbjct: 73  MSFGDEHKLESERKDRLAAELGLDPRQVAVWFQNRRARWKNKRLEEEYNKLKNSHDNVVV 132

Query: 135 EKCRLETELLKLKEQLLEVEKEKERVRMGEGGDGPLSSSSPSPSMSMEAMEME--QPISL 194
           +KCRLE+E+++LKEQL + E+E +  R+ E  +G  S+S  S S+S+EA E        +
Sbjct: 133 DKCRLESEVIQLKEQLYDAEREIQ--RLAERVEGGSSNSPISSSVSVEANETPFFGDYKV 192

Query: 195 GEISPLYEEDVFYYMPENYCIYGMEWPNPYL 220
           G+    Y+  +FY +PEN  I   EW + Y+
Sbjct: 193 GDDGDDYDH-LFYPVPENSYIDEAEWMSLYI 216

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BLAST of Csa4G043850 vs. Swiss-Prot
Match: ATB21_ARATH (Homeobox-leucine zipper protein ATHB-21 OS=Arabidopsis thaliana GN=ATHB-21 PE=2 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 7.3e-46
Identity = 102/186 (54.84%), Postives = 131/186 (70.43%), Query Frame = 1


Query: 1   MNQQQTDQEHQSVQISQLYNGLYIQMLPQQVHLGESKPRRRRKKNRGSETEAASGG---- 60
           MN Q  D +H  + ISQLY  +Y  ++PQQ   GE+KP RRRK+   S   A  G     
Sbjct: 1   MNNQNVD-DHNLLLISQLYPNVYTPLVPQQG--GEAKPTRRRKRKSKSVVVAEEGENEGN 60

Query: 61  ---KKRKLTAAQVRLLESNFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKK 120
              +KRKL+  QVR+LE +F  +HKLESERKDRLASELGLDPRQVAVWFQNRRARWKNK+
Sbjct: 61  GWFRKRKLSDEQVRMLEISFEDDHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKR 120

Query: 121 LEEEYSNLKKLHESVVVEKCRLETELLKLKEQLLEVEKEKERVRMGEGGDGPLSSSSPSP 180
           +E+EY+ LK  +E+ VVEKCRL++E++ LKEQL E E+E +  R+ +  +G LS+S  S 
Sbjct: 121 VEDEYTKLKNAYETTVVEKCRLDSEVIHLKEQLYEAEREIQ--RLAKRVEGTLSNSPISS 180

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BLAST of Csa4G043850 vs. Swiss-Prot
Match: ATB53_ARATH (Homeobox-leucine zipper protein ATHB-53 OS=Arabidopsis thaliana GN=ATHB-53 PE=2 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.9e-38
Identity = 95/197 (48.22%), Postives = 131/197 (66.50%), Query Frame = 1


Query: 35  ESKP--RRRRKKNRGS-----ETEAASGG--KKRKLTAAQVRLLESNFGSEHKLESERKD 94
           ESKP  RRR+++++GS     E  A  GG  +KRKLT  QV +LE +FG+EHKLES RK+
Sbjct: 40  ESKPVKRRRKRRSKGSSATNEEDVAEIGGMLRKRKLTDEQVNMLEYSFGNEHKLESGRKE 99

Query: 95  RLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKLHESVVVEKCRLETELLKLKEQ 154
           ++A ELGLDPRQVAVWFQNRRARWKNKKLEEEY+ LK  H++VV+ +C+LE+++LKL EQ
Sbjct: 100 KIAGELGLDPRQVAVWFQNRRARWKNKKLEEEYAKLKNHHDNVVLGQCQLESQILKLTEQ 159

Query: 155 LLEVEKEKERV--RMGEGGDGPLSSSSPSPSMSMEAMEMEQPISLGEISPLYEEDVFYYM 214
           L E + E  ++  R+ E     + ++S S S+S+EA          E++P    ++ +YM
Sbjct: 160 LSEAQSEIRKLSERLEE-----MPTNSSSSSLSVEANNAPTDF---ELAPETNYNIPFYM 219

Query: 215 PENYCIYGME-WPNPYL 220
            +N  +  ME W   Y+
Sbjct: 220 LDNNYLQSMEYWDGLYV 228

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BLAST of Csa4G043850 vs. Swiss-Prot
Match: HOX14_ORYSJ (Homeobox-leucine zipper protein HOX14 OS=Oryza sativa subsp. japonica GN=HOX14 PE=2 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.1e-33
Identity = 87/193 (45.08%), Postives = 112/193 (58.03%), Query Frame = 1


Query: 37  KPRRRRKKNRGSETEAASGG---------KKRKLTAAQVRLLESNFGSEHKLESERKDRL 96
           +PR RR++ RG+      GG         KKR+L+  QV +LE +F  E KLE+ RK  L
Sbjct: 33  RPRARRRRRRGARCVGGGGGGGEVDGGDPKKRRLSDEQVEMLELSFREERKLETGRKVHL 92

Query: 97  ASELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKLHESVVVEKCRLETELLKLKEQLL 156
           ASELGLDP+QVAVWFQNRRAR K+K LEEE+S LK  H++ ++ KC LE E+L+LKE+L+
Sbjct: 93  ASELGLDPKQVAVWFQNRRARHKSKLLEEEFSKLKHAHDAAILHKCHLENEVLRLKERLV 152

Query: 157 EVEKEKERVR---------------MGEGGDGPLSSSSPSPSMSMEAMEMEQPISLGEIS 206
             E+E  R+R               MG GG G   + SPS S S       QP S G   
Sbjct: 153 VAEEEVRRLRSAAGSHTASGEGGDIMGLGGSGACVAGSPSSSFSTGTC---QPPSFGGGD 212

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BLAST of Csa4G043850 vs. Swiss-Prot
Match: HOX14_ORYSI (Homeobox-leucine zipper protein HOX14 OS=Oryza sativa subsp. indica GN=HOX14 PE=2 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.1e-32
Identity = 82/177 (46.33%), Postives = 103/177 (58.19%), Query Frame = 1


Query: 37  KPRRRRKKNRGSETEAASGG---------KKRKLTAAQVRLLESNFGSEHKLESERKDRL 96
           +PR RR++ RG+      GG         KKR+L+  QV +LE +F  E KLE+ RK  L
Sbjct: 33  RPRARRRRRRGARCVGGGGGGGEVDGGDPKKRRLSDEQVEMLELSFREERKLETGRKVHL 92

Query: 97  ASELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKLHESVVVEKCRLETELLKLKEQLL 156
           ASELGLDP+QVAVWFQNRRAR K+K LEEE+S LK  H++ ++ KC LE E+L+LKE+L+
Sbjct: 93  ASELGLDPKQVAVWFQNRRARHKSKLLEEEFSKLKHAHDAAILHKCHLENEVLRLKERLV 152

Query: 157 EVEKEKERVR---------------MGEGGDGPLSSSSPSPSMSMEAMEMEQPISLG 190
             E+E  R+R               MG GG G   + SPS S S       QP S G
Sbjct: 153 VAEEEVRRLRSAAGSHTASGEGGDIMGLGGSGACVAGSPSSSFSTGTC---QPPSFG 206

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BLAST of Csa4G043850 vs. TrEMBL
Match: A0A0A0KWL3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G043850 PE=4 SV=1)

HSP 1 Score: 441.8 bits (1135), Expect = 4.8e-121
Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 1


Query: 1   MNQQQTDQEHQSVQISQLYNGLYIQMLPQQVHLGESKPRRRRKKNRGSETEAASGGKKRK 60
           MNQQQTDQEHQSVQISQLYNGLYIQMLPQQVHLGESKPRRRRKKNRGSETEAASGGKKRK
Sbjct: 1   MNQQQTDQEHQSVQISQLYNGLYIQMLPQQVHLGESKPRRRRKKNRGSETEAASGGKKRK 60

Query: 61  LTAAQVRLLESNFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSN 120
           LTAAQVRLLESNFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSN
Sbjct: 61  LTAAQVRLLESNFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSN 120

Query: 121 LKKLHESVVVEKCRLETELLKLKEQLLEVEKEKERVRMGEGGDGPLSSSSPSPSMSMEAM 180
           LKKLHESVVVEKCRLETELLKLKEQLLEVEKEKERVRMGEGGDGPLSSSSPSPSMSMEAM
Sbjct: 121 LKKLHESVVVEKCRLETELLKLKEQLLEVEKEKERVRMGEGGDGPLSSSSPSPSMSMEAM 180

Query: 181 EMEQPISLGEISPLYEEDVFYYMPENYCIYGMEWPNPYL 220
           EMEQPISLGEISPLYEEDVFYYMPENYCIYGMEWPNPYL
Sbjct: 181 EMEQPISLGEISPLYEEDVFYYMPENYCIYGMEWPNPYL 219

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BLAST of Csa4G043850 vs. TrEMBL
Match: A0A067KIZ9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12260 PE=4 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 3.5e-63
Identity = 139/211 (65.88%), Postives = 160/211 (75.83%), Query Frame = 1


Query: 9   EHQSVQISQLYNGLYIQMLPQQVHLGESKPRRRRKKNRGSETEAASGGKKRKLTAAQVRL 68
           E   V +SQLY G+Y QM+PQQ   GE+KPRRRRKKN+G E     G KKRKL++ QV L
Sbjct: 10  EDHMVLLSQLYPGVYTQMVPQQ---GEAKPRRRRKKNKGGEG-GVGGAKKRKLSSEQVNL 69

Query: 69  LESNFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKLHESV 128
           LE NFG+EHKLESERKD+LASELGLDPRQVAVWFQNRRARWKNKKLEEEY+ LK  HES+
Sbjct: 70  LEKNFGNEHKLESERKDKLASELGLDPRQVAVWFQNRRARWKNKKLEEEYTKLKTAHESI 129

Query: 129 VVEKCRLETELLKLKEQLLEVEKEKERVRMGEGGDGPLSSSSPSPSMSMEAMEMEQPISL 188
           VVEKCRLE+E+LKLKEQL E E E    R+ E  DG +SS+SPS ++SMEAM   +P  L
Sbjct: 130 VVEKCRLESEVLKLKEQLSEAENEIH--RLTERIDG-VSSNSPSSTLSMEAM---KPTFL 189

Query: 189 GEISPLYEEDVFYYMPENYCIYGMEWPNPYL 220
           GE       D+F YMPENY I+GMEW N  L
Sbjct: 190 GEFGMEGYGDIF-YMPENYYIHGMEWFNDQL 209

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BLAST of Csa4G043850 vs. TrEMBL
Match: W9RLH1_9ROSA (Homeobox-leucine zipper protein ATHB-40 OS=Morus notabilis GN=L484_009043 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 4.6e-63
Identity = 134/216 (62.04%), Postives = 168/216 (77.78%), Query Frame = 1


Query: 5   QTDQEHQSVQISQLYNGLYIQMLPQQVHLGESKPRRRRKKNRGSETEAASGGKKRKLTAA 64
           Q D++H ++ ISQLY G+Y QM+PQQ   GE+KPRRRR+KN+  E    +  KKRKL++ 
Sbjct: 4   QIDEDHMAL-ISQLYPGVYTQMVPQQ---GEAKPRRRRRKNKSGEGGGCAAAKKRKLSSE 63

Query: 65  QVRLLESNFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKL 124
           QV LLE NFG+EHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYS LKK+
Sbjct: 64  QVNLLEMNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTLKKM 123

Query: 125 HESVVVEKCRLETELLKLKEQLLEVEKEKERVRMGEGGDGPLSSSSPSPSMSMEAMEMEQ 184
           H++VVVEKCRLE+E+L+LKEQ+++ +KE +  R+ E  +G +SS+SPS S+S+EA+E   
Sbjct: 124 HDNVVVEKCRLESEVLQLKEQIMDAKKEIQ--RLAERAEG-VSSNSPSSSLSVEAVE--- 183

Query: 185 PISLGEISPLYE-EDVFYYMPENYCIYGMEWPNPYL 220
           P  LGE   + E  D  +Y  EN  I+GMEW N YL
Sbjct: 184 PPFLGEFGVVSEGYDNMFYAAENNYIHGMEWVNLYL 209

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BLAST of Csa4G043850 vs. TrEMBL
Match: A0A068U2N9_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00040311001 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 6.9e-59
Identity = 138/214 (64.49%), Postives = 159/214 (74.30%), Query Frame = 1


Query: 5   QTDQEHQSVQISQLYNGLYIQMLPQQVHLGESKPRRRRKKNRGSETEAASGGKKRKLTAA 64
           Q DQ  Q V ISQ Y G+Y Q+ P +   GE K RRRRKKNRG E+ ++SG +KRKL+  
Sbjct: 8   QADQ--QMVLISQYYPGIYSQLAPAEQ--GEVKSRRRRKKNRGGES-SSSGVRKRKLSQE 67

Query: 65  QVRLLESNFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKL 124
           QV LLE NFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWK+KKLEEEYS LK  
Sbjct: 68  QVNLLEINFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKSKKLEEEYSKLKSE 127

Query: 125 HESVVVEKCRLETELLKLKEQLLEVEKEKERVRMGEGGDGPLSSSSPSPSMSMEAMEMEQ 184
           HE+ VVEKCRLETE+LKLKEQ+ E EKE +R+   E  DG +SS+SPS S SMEA+E   
Sbjct: 128 HENTVVEKCRLETEVLKLKEQVSEAEKEIQRLL--ERSDG-VSSNSPSSSFSMEAIE--- 187

Query: 185 PISLGEISPLYEEDVFYYMPENYCIYGMEWPNPY 219
           P  LGE      E+VF Y+PE   + G+EW N Y
Sbjct: 188 PPFLGEFGMEGFENVF-YVPETNYVNGLEWVNIY 209

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BLAST of Csa4G043850 vs. TrEMBL
Match: A0A061DFY2_THECC (Homeobox protein, putative OS=Theobroma cacao GN=TCM_000438 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 6.9e-59
Identity = 134/214 (62.62%), Postives = 155/214 (72.43%), Query Frame = 1


Query: 4   QQTDQEHQSVQISQLYNGLYIQMLPQQVHLGESKPRRRRKKNRGSETEAASGGKKRKLTA 63
           Q  + E     ISQ+Y G+Y Q+ P   H GESKPRRRRKKN+G E   A G KKRKL+ 
Sbjct: 6   QMNELEDHMALISQMYPGVYTQIAP---HQGESKPRRRRKKNKGGENSLA-GAKKRKLSQ 65

Query: 64  AQVRLLESNFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKK 123
            QV LLE NF  EHKLESERKDRLAS+LGLDPRQVAVWFQNRRARWKNKKLEEEY+ LK 
Sbjct: 66  EQVNLLEHNFSDEHKLESERKDRLASDLGLDPRQVAVWFQNRRARWKNKKLEEEYNKLKT 125

Query: 124 LHESVVVEKCRLETELLKLKEQLLEVEKEKERVRMGEGGDGPLSSSSPSPSMSMEAMEME 183
           +HE  V++KC LE+E+LKLK QL E EKE +  R+ E  DG +SS+SPS S+SMEAM+  
Sbjct: 126 VHEGAVLDKCHLESEVLKLKGQLCEAEKEIQ--RLAERVDG-VSSNSPSSSLSMEAMD-- 185

Query: 184 QPISLGEISPLYEEDVFYYMPENYCIYGME-WPN 217
            P  LGE      +DVF YMPEN  I+GME W N
Sbjct: 186 -PPFLGEFGVEGYDDVF-YMPENSYIHGMEYWMN 208

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BLAST of Csa4G043850 vs. TAIR10
Match: AT4G36740.1 (AT4G36740.1 homeobox protein 40)

HSP 1 Score: 195.3 bits (495), Expect = 4.0e-50
Identity = 114/211 (54.03%), Postives = 144/211 (68.25%), Query Frame = 1


Query: 15  ISQLYNGLYIQMLPQQVHLGESK-PRRRRKKNRGSETEAASGG---KKRKLTAAQVRLLE 74
           ISQLY  +Y Q+    V  GE K P+RRRKK +GS   A  G    +KRKLT  QV +LE
Sbjct: 13  ISQLYPDVYTQI----VQPGEVKQPKRRRKKTKGSVASADGGNGLFRKRKLTDEQVNMLE 72

Query: 75  SNFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKLHESVVV 134
            +FG EHKLESERKDRLA+ELGLDPRQVAVWFQNRRARWKNK+LEEEY+ LK  H++VVV
Sbjct: 73  MSFGDEHKLESERKDRLAAELGLDPRQVAVWFQNRRARWKNKRLEEEYNKLKNSHDNVVV 132

Query: 135 EKCRLETELLKLKEQLLEVEKEKERVRMGEGGDGPLSSSSPSPSMSMEAMEME--QPISL 194
           +KCRLE+E+++LKEQL + E+E +  R+ E  +G  S+S  S S+S+EA E        +
Sbjct: 133 DKCRLESEVIQLKEQLYDAEREIQ--RLAERVEGGSSNSPISSSVSVEANETPFFGDYKV 192

Query: 195 GEISPLYEEDVFYYMPENYCIYGMEWPNPYL 220
           G+    Y+  +FY +PEN  I   EW + Y+
Sbjct: 193 GDDGDDYDH-LFYPVPENSYIDEAEWMSLYI 216

[Close]

BLAST of Csa4G043850 vs. TAIR10
Match: AT2G18550.1 (AT2G18550.1 homeobox protein 21)

HSP 1 Score: 185.3 bits (469), Expect = 4.1e-47
Identity = 102/186 (54.84%), Postives = 131/186 (70.43%), Query Frame = 1


Query: 1   MNQQQTDQEHQSVQISQLYNGLYIQMLPQQVHLGESKPRRRRKKNRGSETEAASGG---- 60
           MN Q  D +H  + ISQLY  +Y  ++PQQ   GE+KP RRRK+   S   A  G     
Sbjct: 1   MNNQNVD-DHNLLLISQLYPNVYTPLVPQQG--GEAKPTRRRKRKSKSVVVAEEGENEGN 60

Query: 61  ---KKRKLTAAQVRLLESNFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKK 120
              +KRKL+  QVR+LE +F  +HKLESERKDRLASELGLDPRQVAVWFQNRRARWKNK+
Sbjct: 61  GWFRKRKLSDEQVRMLEISFEDDHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKR 120

Query: 121 LEEEYSNLKKLHESVVVEKCRLETELLKLKEQLLEVEKEKERVRMGEGGDGPLSSSSPSP 180
           +E+EY+ LK  +E+ VVEKCRL++E++ LKEQL E E+E +  R+ +  +G LS+S  S 
Sbjct: 121 VEDEYTKLKNAYETTVVEKCRLDSEVIHLKEQLYEAEREIQ--RLAKRVEGTLSNSPISS 180

[Close]

BLAST of Csa4G043850 vs. TAIR10
Match: AT5G66700.1 (AT5G66700.1 homeobox 53)

HSP 1 Score: 160.6 bits (405), Expect = 1.1e-39
Identity = 95/197 (48.22%), Postives = 131/197 (66.50%), Query Frame = 1


Query: 35  ESKP--RRRRKKNRGS-----ETEAASGG--KKRKLTAAQVRLLESNFGSEHKLESERKD 94
           ESKP  RRR+++++GS     E  A  GG  +KRKLT  QV +LE +FG+EHKLES RK+
Sbjct: 40  ESKPVKRRRKRRSKGSSATNEEDVAEIGGMLRKRKLTDEQVNMLEYSFGNEHKLESGRKE 99

Query: 95  RLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKLHESVVVEKCRLETELLKLKEQ 154
           ++A ELGLDPRQVAVWFQNRRARWKNKKLEEEY+ LK  H++VV+ +C+LE+++LKL EQ
Sbjct: 100 KIAGELGLDPRQVAVWFQNRRARWKNKKLEEEYAKLKNHHDNVVLGQCQLESQILKLTEQ 159

Query: 155 LLEVEKEKERV--RMGEGGDGPLSSSSPSPSMSMEAMEMEQPISLGEISPLYEEDVFYYM 214
           L E + E  ++  R+ E     + ++S S S+S+EA          E++P    ++ +YM
Sbjct: 160 LSEAQSEIRKLSERLEE-----MPTNSSSSSLSVEANNAPTDF---ELAPETNYNIPFYM 219

Query: 215 PENYCIYGME-WPNPYL 220
            +N  +  ME W   Y+
Sbjct: 220 LDNNYLQSMEYWDGLYV 228

[Close]

BLAST of Csa4G043850 vs. TAIR10
Match: AT1G69780.1 (AT1G69780.1 Homeobox-leucine zipper protein family)

HSP 1 Score: 105.5 bits (262), Expect = 4.2e-23
Identity = 67/187 (35.83%), Postives = 98/187 (52.41%), Query Frame = 1


Query: 5   QTDQEHQSVQISQLYNGLYIQMLPQQVH-----LGESKPRR-----RRKKNRGSETEAAS 64
           + D  HQS  ++ L        LPQ +H     LG+  P           N   E + + 
Sbjct: 21  EDDHPHQSPSLAPLLPSC---SLPQDLHGFASFLGKRSPMEGCCDLETGNNMNGEEDYSD 80

Query: 65  GG-----KKRKLTAAQVRLLESNFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARW 124
            G     KKR+L   QV+ LE NF   +KLE ERK +LA  LGL PRQ+A+WFQNRRARW
Sbjct: 81  DGSQMGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARW 140

Query: 125 KNKKLEEEYSNLKKLHESVVVEKCRLETELLKLKEQL--LEVEKEKERVRMGEGGDGPLS 175
           K K+LE++Y  LK+  +++  E   L+T   KL+ ++  L+  ++ E + + +  +G  S
Sbjct: 141 KTKQLEKDYDTLKRQFDTLKAENDLLQTHNQKLQAEIMGLKNREQTESINLNKETEGSCS 200

[Close]

BLAST of Csa4G043850 vs. TAIR10
Match: AT3G01470.1 (AT3G01470.1 homeobox 1)

HSP 1 Score: 104.0 bits (258), Expect = 1.2e-22
Identity = 60/149 (40.27%), Postives = 85/149 (57.05%), Query Frame = 1


Query: 57  KKRKLTAAQVRLLESNFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEE 116
           KKR+LT  QV LLE +F +E+KLE ERK +LA +LGL PRQVAVWFQNRRARWK K+LE 
Sbjct: 68  KKRRLTTEQVHLLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLER 127

Query: 117 EYSNLKKL-------HESVVVEKCRLETELLKLKEQLLEVEKEKERVRMGEGGDGPLSSS 176
           +Y  LK         ++S+V++  +L +E+  L E+L    + K+       G  P  + 
Sbjct: 128 DYDLLKSTYDQLLSNYDSIVMDNDKLRSEVTSLTEKL----QGKQETANEPPGQVPEPNQ 187

Query: 177 SPSPSMSMEAMEMEQPISLGEISPLYEED 199
                ++  A++ E  +S G +     +D
Sbjct: 188 LDPVYINAAAIKTEDRLSSGSVGSAVLDD 212

[Close]

BLAST of Csa4G043850 vs. NCBI nr
Match: gi|449457492|ref|XP_004146482.1| (PREDICTED: homeobox-leucine zipper protein ATHB-40-like [Cucumis sativus])

HSP 1 Score: 441.8 bits (1135), Expect = 7.0e-121
Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 1


Query: 1   MNQQQTDQEHQSVQISQLYNGLYIQMLPQQVHLGESKPRRRRKKNRGSETEAASGGKKRK 60
           MNQQQTDQEHQSVQISQLYNGLYIQMLPQQVHLGESKPRRRRKKNRGSETEAASGGKKRK
Sbjct: 1   MNQQQTDQEHQSVQISQLYNGLYIQMLPQQVHLGESKPRRRRKKNRGSETEAASGGKKRK 60

Query: 61  LTAAQVRLLESNFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSN 120
           LTAAQVRLLESNFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSN
Sbjct: 61  LTAAQVRLLESNFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSN 120

Query: 121 LKKLHESVVVEKCRLETELLKLKEQLLEVEKEKERVRMGEGGDGPLSSSSPSPSMSMEAM 180
           LKKLHESVVVEKCRLETELLKLKEQLLEVEKEKERVRMGEGGDGPLSSSSPSPSMSMEAM
Sbjct: 121 LKKLHESVVVEKCRLETELLKLKEQLLEVEKEKERVRMGEGGDGPLSSSSPSPSMSMEAM 180

Query: 181 EMEQPISLGEISPLYEEDVFYYMPENYCIYGMEWPNPYL 220
           EMEQPISLGEISPLYEEDVFYYMPENYCIYGMEWPNPYL
Sbjct: 181 EMEQPISLGEISPLYEEDVFYYMPENYCIYGMEWPNPYL 219

[Close]

BLAST of Csa4G043850 vs. NCBI nr
Match: gi|659107539|ref|XP_008453727.1| (PREDICTED: homeobox-leucine zipper protein ATHB-40 [Cucumis melo])

HSP 1 Score: 408.3 bits (1048), Expect = 8.5e-111
Identity = 207/219 (94.52%), Postives = 212/219 (96.80%), Query Frame = 1


Query: 1   MNQQQTDQEHQSVQISQLYNGLYIQMLPQQVHLGESKPRRRRKKNRGSETEAASGGKKRK 60
           MNQQQT +EHQSVQISQLYNGLYIQMLPQQ +LGESKPRRRRKKNRGSETEA+SGGKKRK
Sbjct: 1   MNQQQT-EEHQSVQISQLYNGLYIQMLPQQGNLGESKPRRRRKKNRGSETEASSGGKKRK 60

Query: 61  LTAAQVRLLESNFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSN 120
           LTAAQV LLESNFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSN
Sbjct: 61  LTAAQVHLLESNFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSN 120

Query: 121 LKKLHESVVVEKCRLETELLKLKEQLLEVEKEKERVRMGEGGDGPLSSSSPSPSMSMEAM 180
           LKKLHESVVVEKCRLETELLKLKEQL+EVEKEKERV MGE  DGPLSSSSPSPSMSMEAM
Sbjct: 121 LKKLHESVVVEKCRLETELLKLKEQLIEVEKEKERVIMGERADGPLSSSSPSPSMSMEAM 180

Query: 181 EMEQPISLGEISPLYEEDVFYYMPENYCIYGMEWPNPYL 220
           EM+ PISLGEISPLYEEDVFYYMPENYCIYGMEWPNPYL
Sbjct: 181 EMD-PISLGEISPLYEEDVFYYMPENYCIYGMEWPNPYL 217

[Close]

BLAST of Csa4G043850 vs. NCBI nr
Match: gi|643721920|gb|KDP31799.1| (hypothetical protein JCGZ_12260 [Jatropha curcas])

HSP 1 Score: 249.6 bits (636), Expect = 5.1e-63
Identity = 139/211 (65.88%), Postives = 160/211 (75.83%), Query Frame = 1


Query: 9   EHQSVQISQLYNGLYIQMLPQQVHLGESKPRRRRKKNRGSETEAASGGKKRKLTAAQVRL 68
           E   V +SQLY G+Y QM+PQQ   GE+KPRRRRKKN+G E     G KKRKL++ QV L
Sbjct: 10  EDHMVLLSQLYPGVYTQMVPQQ---GEAKPRRRRKKNKGGEG-GVGGAKKRKLSSEQVNL 69

Query: 69  LESNFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKLHESV 128
           LE NFG+EHKLESERKD+LASELGLDPRQVAVWFQNRRARWKNKKLEEEY+ LK  HES+
Sbjct: 70  LEKNFGNEHKLESERKDKLASELGLDPRQVAVWFQNRRARWKNKKLEEEYTKLKTAHESI 129

Query: 129 VVEKCRLETELLKLKEQLLEVEKEKERVRMGEGGDGPLSSSSPSPSMSMEAMEMEQPISL 188
           VVEKCRLE+E+LKLKEQL E E E    R+ E  DG +SS+SPS ++SMEAM   +P  L
Sbjct: 130 VVEKCRLESEVLKLKEQLSEAENEIH--RLTERIDG-VSSNSPSSTLSMEAM---KPTFL 189

Query: 189 GEISPLYEEDVFYYMPENYCIYGMEWPNPYL 220
           GE       D+F YMPENY I+GMEW N  L
Sbjct: 190 GEFGMEGYGDIF-YMPENYYIHGMEWFNDQL 209

[Close]

BLAST of Csa4G043850 vs. NCBI nr
Match: gi|802640916|ref|XP_012079075.1| (PREDICTED: homeobox-leucine zipper protein ATHB-40 [Jatropha curcas])

HSP 1 Score: 249.6 bits (636), Expect = 5.1e-63
Identity = 139/211 (65.88%), Postives = 160/211 (75.83%), Query Frame = 1


Query: 9   EHQSVQISQLYNGLYIQMLPQQVHLGESKPRRRRKKNRGSETEAASGGKKRKLTAAQVRL 68
           E   V +SQLY G+Y QM+PQQ   GE+KPRRRRKKN+G E     G KKRKL++ QV L
Sbjct: 43  EDHMVLLSQLYPGVYTQMVPQQ---GEAKPRRRRKKNKGGEG-GVGGAKKRKLSSEQVNL 102

Query: 69  LESNFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKLHESV 128
           LE NFG+EHKLESERKD+LASELGLDPRQVAVWFQNRRARWKNKKLEEEY+ LK  HES+
Sbjct: 103 LEKNFGNEHKLESERKDKLASELGLDPRQVAVWFQNRRARWKNKKLEEEYTKLKTAHESI 162

Query: 129 VVEKCRLETELLKLKEQLLEVEKEKERVRMGEGGDGPLSSSSPSPSMSMEAMEMEQPISL 188
           VVEKCRLE+E+LKLKEQL E E E    R+ E  DG +SS+SPS ++SMEAM   +P  L
Sbjct: 163 VVEKCRLESEVLKLKEQLSEAENEIH--RLTERIDG-VSSNSPSSTLSMEAM---KPTFL 222

Query: 189 GEISPLYEEDVFYYMPENYCIYGMEWPNPYL 220
           GE       D+F YMPENY I+GMEW N  L
Sbjct: 223 GEFGMEGYGDIF-YMPENYYIHGMEWFNDQL 242

[Close]

BLAST of Csa4G043850 vs. NCBI nr
Match: gi|703111325|ref|XP_010099829.1| (Homeobox-leucine zipper protein ATHB-40 [Morus notabilis])

HSP 1 Score: 249.2 bits (635), Expect = 6.6e-63
Identity = 134/216 (62.04%), Postives = 168/216 (77.78%), Query Frame = 1


Query: 5   QTDQEHQSVQISQLYNGLYIQMLPQQVHLGESKPRRRRKKNRGSETEAASGGKKRKLTAA 64
           Q D++H ++ ISQLY G+Y QM+PQQ   GE+KPRRRR+KN+  E    +  KKRKL++ 
Sbjct: 4   QIDEDHMAL-ISQLYPGVYTQMVPQQ---GEAKPRRRRRKNKSGEGGGCAAAKKRKLSSE 63

Query: 65  QVRLLESNFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKL 124
           QV LLE NFG+EHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYS LKK+
Sbjct: 64  QVNLLEMNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTLKKM 123

Query: 125 HESVVVEKCRLETELLKLKEQLLEVEKEKERVRMGEGGDGPLSSSSPSPSMSMEAMEMEQ 184
           H++VVVEKCRLE+E+L+LKEQ+++ +KE +  R+ E  +G +SS+SPS S+S+EA+E   
Sbjct: 124 HDNVVVEKCRLESEVLQLKEQIMDAKKEIQ--RLAERAEG-VSSNSPSSSLSVEAVE--- 183

Query: 185 PISLGEISPLYE-EDVFYYMPENYCIYGMEWPNPYL 220
           P  LGE   + E  D  +Y  EN  I+GMEW N YL
Sbjct: 184 PPFLGEFGVVSEGYDNMFYAAENNYIHGMEWVNLYL 209

The following BLAST results are available for this feature:

BLAST of Csa4G043850 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ATB40_ARATH	7.1e-49	54.03	Homeobox-leucine zipper protein ATHB-40 OS=Arabidopsis thaliana GN=ATHB-40 PE=2 ...	[more]
ATB21_ARATH	7.3e-46	54.84	Homeobox-leucine zipper protein ATHB-21 OS=Arabidopsis thaliana GN=ATHB-21 PE=2 ...	[more]
ATB53_ARATH	1.9e-38	48.22	Homeobox-leucine zipper protein ATHB-53 OS=Arabidopsis thaliana GN=ATHB-53 PE=2 ...	[more]
HOX14_ORYSJ	1.1e-33	45.08	Homeobox-leucine zipper protein HOX14 OS=Oryza sativa subsp. japonica GN=HOX14 P...	[more]
HOX14_ORYSI	2.1e-32	46.33	Homeobox-leucine zipper protein HOX14 OS=Oryza sativa subsp. indica GN=HOX14 PE=...	[more]

BLAST of Csa4G043850 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWL3_CUCSA	4.8e-121	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G043850 PE=4 SV=1	[more]
A0A067KIZ9_JATCU	3.5e-63	65.88	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12260 PE=4 SV=1	[more]
W9RLH1_9ROSA	4.6e-63	62.04	Homeobox-leucine zipper protein ATHB-40 OS=Morus notabilis GN=L484_009043 PE=4 S...	[more]
A0A068U2N9_COFCA	6.9e-59	64.49	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00040311001 PE=4 SV=1	[more]
A0A061DFY2_THECC	6.9e-59	62.62	Homeobox protein, putative OS=Theobroma cacao GN=TCM_000438 PE=4 SV=1	[more]

BLAST of Csa4G043850 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G36740.1	4.0e-50	54.03	homeobox protein 40	[more]
AT2G18550.1	4.1e-47	54.84	homeobox protein 21	[more]
AT5G66700.1	1.1e-39	48.22	homeobox 53	[more]
AT1G69780.1	4.2e-23	35.83	Homeobox-leucine zipper protein family	[more]
AT3G01470.1	1.2e-22	40.27	homeobox 1	[more]

BLAST of Csa4G043850 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449457492\|ref\|XP_004146482.1\|	7.0e-121	100.00	PREDICTED: homeobox-leucine zipper protein ATHB-40-like [Cucumis sativus]	[more]
gi\|659107539\|ref\|XP_008453727.1\|	8.5e-111	94.52	PREDICTED: homeobox-leucine zipper protein ATHB-40 [Cucumis melo]	[more]
gi\|643721920\|gb\|KDP31799.1\|	5.1e-63	65.88	hypothetical protein JCGZ_12260 [Jatropha curcas]	[more]
gi\|802640916\|ref\|XP_012079075.1\|	5.1e-63	65.88	PREDICTED: homeobox-leucine zipper protein ATHB-40 [Jatropha curcas]	[more]
gi\|703111325\|ref\|XP_010099829.1\|	6.6e-63	62.04	Homeobox-leucine zipper protein ATHB-40 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000047	HTH_motif
IPR001356	Homeobox_dom
IPR009057	Homeobox-like_sf
IPR017970	Homeobox_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0043565	sequence-specific DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003677	DNA binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU154342	cucumber EST collection version 3.0	transcribed_cluster
CU158464	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa4G043850.1	Csa4G043850.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU158464	CU158464	transcribed_cluster
CU154342	CU154342	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000047	Helix-turn-helix motif	PRINTS	PR00031	HTHREPRESSR	coord: 83..92 score: 1.4E-5coord: 92..108 score: 1.
IPR001356	Homeobox domain	PFAM	PF00046	Homeobox	coord: 57..111 score: 3.8
IPR001356	Homeobox domain	SMART	SM00389	HOX_1	coord: 55..116 score: 2.9
IPR001356	Homeobox domain	PROFILE	PS50071	HOMEOBOX_2	coord: 52..112 score: 16
IPR009057	Homeodomain-like	GENE3D	G3DSA:1.10.10.60		coord: 59..119 score: 6.1
IPR009057	Homeodomain-like	unknown	SSF46689	Homeodomain-like	coord: 56..120 score: 2.48
IPR017970	Homeobox, conserved site	PROSITE	PS00027	HOMEOBOX_1	coord: 87..110 scor
None	No IPR available	unknown	Coil	Coil	coord: 135..159 score: -coord: 104..131 scor
None	No IPR available	PANTHER	PTHR24326	FAMILY NOT NAMED	coord: 23..212 score: 2.2
None	No IPR available	PANTHER	PTHR24326:SF281	HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-21-RELATED	coord: 23..212 score: 2.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa4G043850	Cla014541	Watermelon (97103) v1	cuwmB310
Csa4G043850	ClCG07G008960	Watermelon (Charleston Gray)	cuwcgB325
Csa4G043850	Cla97C07G135990	Watermelon (97103) v2	cuwmbB322
Csa4G043850	CSPI04G05110	Wild cucumber (PI 183967)	cpicuB182
Csa4G043850	Cucsa.201240	Cucumber (Gy14) v1	cgycuB306
Csa4G043850	CmaCh04G007730	Cucurbita maxima (Rimu)	cmacuB713
Csa4G043850	CmoCh04G008280	Cucurbita moschata (Rifu)	cmocuB705
Csa4G043850	Cp4.1LG01g06810	Cucurbita pepo (Zucchini)	cpecuB400
Csa4G043850	CsGy4G005010	Cucumber (Gy14) v2	cgybcuB165
Csa4G043850	Carg14172	Silver-seed gourd	carcuB0958

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa4G043850	Melon (DHL92) v3.6.1	cumedB263
Csa4G043850	Melon (DHL92) v3.6.1	cumedB297
Csa4G043850	Silver-seed gourd	carcuB1033
Csa4G043850	Wax gourd	cuwgoB376
Csa4G043850	Cucurbita maxima (Rimu)	cmacuB337
Csa4G043850	Cucurbita moschata (Rifu)	cmocuB325
Csa4G043850	Melon (DHL92) v3.5.1	cumeB312
Csa4G043850	Cucurbita pepo (Zucchini)	cpecuB221
Csa4G043850	Bottle gourd (USVL1VR-Ls)	culsiB303