Csa4G023050 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G023050
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 2614623 .. 2615100 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATAAGGAGTGAATTGGATCAACTTAAGGAATTCAGCCGATCCTCCTTTATCGTCTTCTTCCAAGTCGTAGTCCTCGTGTGGGACGCACATGCTGTTGCTTGTCATTGTCTTGCTCCATACGATCTAGCTAGCAATTACAAGGGGGCTTCCCATGGCAATAACTTGACAAAGATCAAGTCCTTATGCTTGGAGGTCAAAAACCCTTTAGATATGGAAGTTTTGAGCCTATTCTTTTGGTTTTCTCAAGCAACTGTCTAGCTGTATGTATTCTATATCCTGTCTTCTGGGGTCTATTGAACCTGCTAAGGTAACTTTTAACCCCATGTACTGGCTCTTTTTGGTCTCAAACACATCGTAAGCATTTGTTAACTGTGGTGTTATATTGTGTTTATCCAATTCCTTTGGCAATGAATGTTTATTTATGTGTTTTAAGAGTGAGGCATTTGTAGACTTTTAGTATTTTCTTTGTTTAAAA

mRNA sequence

ATGATAAGGAGTGAATTGGATCAACTTAAGGAATTCAGCCGATCCTCCTTTATCGTCTTCTTCCAAGTCGTAGTCCTCGTGTGGGACGCACATGCTGTTGCTTGTCATTGTCTTGCTCCATACGATCTAGCTAGCAATTACAAGGGGGCTTCCCATGGCAATAACTTGACAAAGATCAAGTCCTTATGCTTGGAGGTCAAAAACCCTTTAGATATGGAAGTTTTGAGCCTATTCTTTTGGTTTTCTCAAGCAACTGTCTAG

Coding sequence (CDS)

ATGATAAGGAGTGAATTGGATCAACTTAAGGAATTCAGCCGATCCTCCTTTATCGTCTTCTTCCAAGTCGTAGTCCTCGTGTGGGACGCACATGCTGTTGCTTGTCATTGTCTTGCTCCATACGATCTAGCTAGCAATTACAAGGGGGCTTCCCATGGCAATAACTTGACAAAGATCAAGTCCTTATGCTTGGAGGTCAAAAACCCTTTAGATATGGAAGTTTTGAGCCTATTCTTTTGGTTTTCTCAAGCAACTGTCTAG

Protein sequence

MIRSELDQLKEFSRSSFIVFFQVVVLVWDAHAVACHCLAPYDLASNYKGASHGNNLTKIKSLCLEVKNPLDMEVLSLFFWFSQATV*
Homology
[Close]
BLAST of Csa4G023050 vs. TrEMBL
Match: A0A0A0KU56_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G023050 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 6.7e-42
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1 

Query: 1  MIRSELDQLKEFSRSSFIVFFQVVVLVWDAHAVACHCLAPYDLASNYKGASHGNNLTKIK 60
          MIRSELDQLKEFSRSSFIVFFQVVVLVWDAHAVACHCLAPYDLASNYKGASHGNNLTKIK
Sbjct: 1  MIRSELDQLKEFSRSSFIVFFQVVVLVWDAHAVACHCLAPYDLASNYKGASHGNNLTKIK 60

Query: 61 SLCLEVKNPLDMEVLSLFFWFSQATV 87
          SLCLEVKNPLDMEVLSLFFWFSQATV
Sbjct: 61 SLCLEVKNPLDMEVLSLFFWFSQATV 86

[Close]
BLAST of Csa4G023050 vs. NCBI nr
Match: gi|700198012|gb|KGN53170.1| (hypothetical protein Csa_4G023050 [Cucumis sativus])

HSP 1 Score: 177.6 bits (449), Expect = 9.7e-42
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1 

Query: 1  MIRSELDQLKEFSRSSFIVFFQVVVLVWDAHAVACHCLAPYDLASNYKGASHGNNLTKIK 60
          MIRSELDQLKEFSRSSFIVFFQVVVLVWDAHAVACHCLAPYDLASNYKGASHGNNLTKIK
Sbjct: 1  MIRSELDQLKEFSRSSFIVFFQVVVLVWDAHAVACHCLAPYDLASNYKGASHGNNLTKIK 60

Query: 61 SLCLEVKNPLDMEVLSLFFWFSQATV 87
          SLCLEVKNPLDMEVLSLFFWFSQATV
Sbjct: 61 SLCLEVKNPLDMEVLSLFFWFSQATV 86

The following BLAST results are available for this feature:
BLAST of Csa4G023050 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KU56_CUCSA6.7e-42100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G023050 PE=4 SV=1[more]
BLAST of Csa4G023050 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198012|gb|KGN53170.1|9.7e-42100.00hypothetical protein Csa_4G023050 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU139505cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G023050.1Csa4G023050.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU139505CU139505transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa4G023050Cucsa.094070Cucumber (Gy14) v1cgycuB102
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G023050Cucurbita maxima (Rimu)cmacuB332
Csa4G023050Cucurbita maxima (Rimu)cmacuB710
Csa4G023050Cucurbita moschata (Rifu)cmocuB321
Csa4G023050Cucurbita moschata (Rifu)cmocuB700
Csa4G023050Melon (DHL92) v3.5.1cumeB312
Csa4G023050Watermelon (Charleston Gray)cuwcgB287
Csa4G023050Watermelon (Charleston Gray)cuwcgB319
Csa4G023050Watermelon (97103) v1cuwmB312
Csa4G023050Cucurbita pepo (Zucchini)cpecuB218
Csa4G023050Cucurbita pepo (Zucchini)cpecuB401
Csa4G023050Bottle gourd (USVL1VR-Ls)culsiB303
Csa4G023050Cucumber (Gy14) v2cgybcuB165
Csa4G023050Melon (DHL92) v3.6.1cumedB297
Csa4G023050Silver-seed gourdcarcuB0403
Csa4G023050Silver-seed gourdcarcuB0886
Csa4G023050Watermelon (97103) v2cuwmbB267
Csa4G023050Watermelon (97103) v2cuwmbB316
Csa4G023050Wax gourdcuwgoB376