Csa3G822480 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G822480
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 32342379 .. 32342948 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCAGTCACATTGAACAAGGAGTTTTGATATTTGATTCGGAGGTATCTGATGGAGGCTACAGATTGGGAAAGCTCATCAGGAGGAGCTAGTGGTGATGACGACAATTACGAGCAAGACATAAAAGATGAAGAAGAACGTCTCTTCGCATCTGGATACTTGCGCAAGCTGCAGTTTAGGTTGAGAATTTCAAGAATTTGAACTCCTCCAAATCCTTCAATAGGATGTTTCTATTTGCTTATTATCAAGTGTTTGTTTCAATAATTTATTTGTCTCCCTAGGAAGCATGCTTCAACTGTTCGATGGAATGATCGAATGGGAATGGCAGAAGTTGTAGAGAACAAGAGCAGATAGACGGCTTTGATAGACGGATGATTCTACCAATCCGGCTTTGATAGACGGGTTAAAATCTCCTGCCAAGCACCATCAAGAACCAAATAAGCCAAAGACCCAACTCTTCCTTAAACTTCTTCCCTGTTCATTTGCAAGGCCATTCACTCCCAATGATCTGTATTCCTCAATCTGTCCAAAGAAAAGCAAGAAAATTGATACAGAGTAGATTCCTTTAACAA

mRNA sequence

ATGGAGGCTACAGATTGGGAAAGCTCATCAGGAGGAGCTAGTGGTGATGACGACAATTACGAGCAAGACATAAAAGATGAAGAAGAACGTCTCTTCGCATCTGGATACTTGCGCAAGCTGCAGTTTAGGAAGCATGCTTCAACTGTTCGATGGAATGATCGAATGGGAATGGCAGAAGTTGTAGAGAACAAGAGCAGATAG

Coding sequence (CDS)

ATGGAGGCTACAGATTGGGAAAGCTCATCAGGAGGAGCTAGTGGTGATGACGACAATTACGAGCAAGACATAAAAGATGAAGAAGAACGTCTCTTCGCATCTGGATACTTGCGCAAGCTGCAGTTTAGGAAGCATGCTTCAACTGTTCGATGGAATGATCGAATGGGAATGGCAGAAGTTGTAGAGAACAAGAGCAGATAG

Protein sequence

MEATDWESSSGGASGDDDNYEQDIKDEEERLFASGYLRKLQFRKHASTVRWNDRMGMAEVVENKSR*
Homology
[Close]
BLAST of Csa3G822480 vs. TrEMBL
Match: A0A0A0LCN1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G822480 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 3.5e-30
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1 

Query: 1  MEATDWESSSGGASGDDDNYEQDIKDEEERLFASGYLRKLQFRKHASTVRWNDRMGMAEV 60
          MEATDWESSSGGASGDDDNYEQDIKDEEERLFASGYLRKLQFRKHASTVRWNDRMGMAEV
Sbjct: 1  MEATDWESSSGGASGDDDNYEQDIKDEEERLFASGYLRKLQFRKHASTVRWNDRMGMAEV 60

Query: 61 VENKSR 67
          VENKSR
Sbjct: 61 VENKSR 66

[Close]
BLAST of Csa3G822480 vs. TrEMBL
Match: A0A0A0KXV5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G334710 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 7.8e-22
Identity = 55/66 (83.33%), Postives = 59/66 (89.39%), Query Frame = 1 

Query: 1  MEATDWESSSGGAS--GDDDNYEQDIKDEEERLFASGYLRKLQFRKHASTVRWNDRMGMA 60
          MEAT+WESSSGGAS  GD+DNYEQDI DEEE L ASG LRKLQFRKHAST RWND+MGMA
Sbjct: 1  MEATNWESSSGGASDTGDEDNYEQDINDEEECLSASGCLRKLQFRKHASTARWNDQMGMA 60

Query: 61 EVVENK 65
          EV+ENK
Sbjct: 61 EVLENK 66

[Close]
BLAST of Csa3G822480 vs. TrEMBL
Match: A0A059D747_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B02734 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.8e-08
Identity = 34/66 (51.52%), Postives = 40/66 (60.61%), Query Frame = 1 

Query: 1  MEATDWESSSGGASGDDDNYEQDIKDEEERLFASGYLRKLQFRKHASTVRWNDRMGMAEV 60
          ME  DW+    G S D +  EQD+KDEEE  + S    KLQFRK  S  RWN R+ MAEV
Sbjct: 1  MECEDWD----GLSSDSELLEQDLKDEEEYNYTSNSSSKLQFRKVTSVARWNSRVRMAEV 60

Query: 61 VENKSR 67
          VE K +
Sbjct: 61 VERKGQ 62

[Close]
BLAST of Csa3G822480 vs. TrEMBL
Match: F6HKU8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g08870 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 8.4e-08
Identity = 34/66 (51.52%), Postives = 40/66 (60.61%), Query Frame = 1 

Query: 1   MEATDWESSSGGASGDDDNYEQDIKDEEERLFASGYLRKLQFRKHASTVRWNDRMGMAEV 60
           +E  DW SSSGGAS + + Y QD  DEEE    SG +  LQF K  S   WND +GMA V
Sbjct: 74  VEDEDWASSSGGAS-NSEIYLQDANDEEEHYCISGSISNLQFSKAVSKAIWNDEIGMAAV 133

Query: 61  VENKSR 67
           VE K +
Sbjct: 134 VEKKGK 138

[Close]
BLAST of Csa3G822480 vs. TrEMBL
Match: A0A059DH87_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02322 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.1e-07
Identity = 33/66 (50.00%), Postives = 39/66 (59.09%), Query Frame = 1 

Query: 1  MEATDWESSSGGASGDDDNYEQDIKDEEERLFASGYLRKLQFRKHASTVRWNDRMGMAEV 60
          ME  DW     G S D +  E+D+KDEEE  + S    KLQFRK  S  RWN  +GMAEV
Sbjct: 1  MECEDWH----GLSSDSELLEEDLKDEEEYNYTSNSSSKLQFRKVTSVARWNSGVGMAEV 60

Query: 61 VENKSR 67
          VE K +
Sbjct: 61 VERKGQ 62

[Close]
BLAST of Csa3G822480 vs. NCBI nr
Match: gi|700204365|gb|KGN59498.1| (hypothetical protein Csa_3G822480 [Cucumis sativus])

HSP 1 Score: 138.3 bits (347), Expect = 5.0e-30
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1 

Query: 1  MEATDWESSSGGASGDDDNYEQDIKDEEERLFASGYLRKLQFRKHASTVRWNDRMGMAEV 60
          MEATDWESSSGGASGDDDNYEQDIKDEEERLFASGYLRKLQFRKHASTVRWNDRMGMAEV
Sbjct: 1  MEATDWESSSGGASGDDDNYEQDIKDEEERLFASGYLRKLQFRKHASTVRWNDRMGMAEV 60

Query: 61 VENKSR 67
          VENKSR
Sbjct: 61 VENKSR 66

[Close]
BLAST of Csa3G822480 vs. NCBI nr
Match: gi|778694022|ref|XP_011653727.1| (PREDICTED: uncharacterized protein LOC101210680 isoform X2 [Cucumis sativus])

HSP 1 Score: 110.5 bits (275), Expect = 1.1e-21
Identity = 55/66 (83.33%), Postives = 59/66 (89.39%), Query Frame = 1 

Query: 1  MEATDWESSSGGAS--GDDDNYEQDIKDEEERLFASGYLRKLQFRKHASTVRWNDRMGMA 60
          MEAT+WESSSGGAS  GD+DNYEQDI DEEE L ASG LRKLQFRKHAST RWND+MGMA
Sbjct: 1  MEATNWESSSGGASDTGDEDNYEQDINDEEECLSASGCLRKLQFRKHASTARWNDQMGMA 60

Query: 61 EVVENK 65
          EV+ENK
Sbjct: 61 EVLENK 66

[Close]
BLAST of Csa3G822480 vs. NCBI nr
Match: gi|778694019|ref|XP_011653726.1| (PREDICTED: uncharacterized protein LOC101210680 isoform X1 [Cucumis sativus])

HSP 1 Score: 110.5 bits (275), Expect = 1.1e-21
Identity = 55/66 (83.33%), Postives = 59/66 (89.39%), Query Frame = 1 

Query: 1  MEATDWESSSGGAS--GDDDNYEQDIKDEEERLFASGYLRKLQFRKHASTVRWNDRMGMA 60
          MEAT+WESSSGGAS  GD+DNYEQDI DEEE L ASG LRKLQFRKHAST RWND+MGMA
Sbjct: 1  MEATNWESSSGGASDTGDEDNYEQDINDEEECLSASGCLRKLQFRKHASTARWNDQMGMA 60

Query: 61 EVVENK 65
          EV+ENK
Sbjct: 61 EVLENK 66

[Close]
BLAST of Csa3G822480 vs. NCBI nr
Match: gi|659126611|ref|XP_008463274.1| (PREDICTED: uncharacterized protein LOC103501474 [Cucumis melo])

HSP 1 Score: 105.9 bits (263), Expect = 2.8e-20
Identity = 53/66 (80.30%), Postives = 58/66 (87.88%), Query Frame = 1 

Query: 1  MEATDWESSSGGAS--GDDDNYEQDIKDEEERLFASGYLRKLQFRKHASTVRWNDRMGMA 60
          MEAT+W+SSSGGAS  GD+DNYEQDI DEEE L AS  LRKLQFRKHAST RWND+MGMA
Sbjct: 1  MEATNWKSSSGGASDTGDEDNYEQDINDEEECLSASRCLRKLQFRKHASTARWNDQMGMA 60

Query: 61 EVVENK 65
          EV+ENK
Sbjct: 61 EVLENK 66

[Close]
BLAST of Csa3G822480 vs. NCBI nr
Match: gi|702274046|ref|XP_010044016.1| (PREDICTED: tRNA-splicing endonuclease subunit Sen54-like [Eucalyptus grandis])

HSP 1 Score: 65.1 bits (157), Expect = 5.4e-08
Identity = 34/66 (51.52%), Postives = 40/66 (60.61%), Query Frame = 1 

Query: 1  MEATDWESSSGGASGDDDNYEQDIKDEEERLFASGYLRKLQFRKHASTVRWNDRMGMAEV 60
          ME  DW+    G S D +  EQD+KDEEE  + S    KLQFRK  S  RWN R+ MAEV
Sbjct: 1  MECEDWD----GLSSDSELLEQDLKDEEEYNYTSNSSSKLQFRKVTSVARWNSRVRMAEV 60

Query: 61 VENKSR 67
          VE K +
Sbjct: 61 VERKGQ 62

The following BLAST results are available for this feature:
BLAST of Csa3G822480 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LCN1_CUCSA3.5e-30100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G822480 PE=4 SV=1[more]
A0A0A0KXV5_CUCSA7.8e-2283.33Uncharacterized protein OS=Cucumis sativus GN=Csa_4G334710 PE=4 SV=1[more]
A0A059D747_EUCGR3.8e-0851.52Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B02734 PE=4 SV=1[more]
F6HKU8_VITVI8.4e-0851.52Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g08870 PE=4 SV=... [more]
A0A059DH87_EUCGR1.1e-0750.00Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02322 PE=4 SV=1[more]
BLAST of Csa3G822480 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700204365|gb|KGN59498.1|5.0e-30100.00hypothetical protein Csa_3G822480 [Cucumis sativus][more]
gi|778694022|ref|XP_011653727.1|1.1e-2183.33PREDICTED: uncharacterized protein LOC101210680 isoform X2 [Cucumis sativus][more]
gi|778694019|ref|XP_011653726.1|1.1e-2183.33PREDICTED: uncharacterized protein LOC101210680 isoform X1 [Cucumis sativus][more]
gi|659126611|ref|XP_008463274.1|2.8e-2080.30PREDICTED: uncharacterized protein LOC103501474 [Cucumis melo][more]
gi|702274046|ref|XP_010044016.1|5.4e-0851.52PREDICTED: tRNA-splicing endonuclease subunit Sen54-like [Eucalyptus grandis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU105797cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G822480.1Csa3G822480.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU105797CU105797transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa3G822480ClCG10G015700Watermelon (Charleston Gray)cuwcgB194
Csa3G822480Lsi03G015550Bottle gourd (USVL1VR-Ls)culsiB186
Csa3G822480MELO3C030712.2Melon (DHL92) v3.6.1cumedB207
Csa3G822480Cla97C10G198600Watermelon (97103) v2cuwmbB186
Csa3G822480Bhi11G002396Wax gourdcuwgoB220
Csa3G822480CSPI03G38330Wild cucumber (PI 183967)cpicuB120
Csa3G822480CsGy3G035870Cucumber (Gy14) v2cgybcuB110
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G822480Cucurbita maxima (Rimu)cmacuB239
Csa3G822480Cucurbita maxima (Rimu)cmacuB831
Csa3G822480Cucurbita moschata (Rifu)cmocuB226
Csa3G822480Cucurbita moschata (Rifu)cmocuB819
Csa3G822480Melon (DHL92) v3.5.1cumeB223
Csa3G822480Watermelon (97103) v1cuwmB198
Csa3G822480Cucurbita pepo (Zucchini)cpecuB597
Csa3G822480Silver-seed gourdcarcuB0345
Csa3G822480Cucumber (Gy14) v1cgycuB478