Csa3G815490 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G815490
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Regulation of nuclear pre-mRNA domain-containing protein 1B; contains IPR006569 (CID domain), IPR008942 (ENTH/VHS)
Location	Chr3 : 31514765 .. 31515133 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTCTGTTTATCTTTGATATCAAATTAGCTTTATCAAAATGGTGCATTTCCCACCGGAAAAAGGCCAAGCAGATTGTCGAAACATGGGATAAATTATTCAACTCATCGCAGAAAGAGCAGCGTGTTTCATTTCTGTATTTGGCAAATGATATTTTGCAAAACAGCAGGCGCAAGGGAAGTGAATTTGTGAACGAATTCTGGAAAGTTCTTCCTGGTGCCCTCAAGTATGTATACGATCATGGCGACGAAAGTGGAAAGAAAGCAGTTGCCAGACTTGTATGTCTTCTTTTTACTTGTGCAGAAAAAAAAATGGCAATAAACCTTCATATGTTTTTCCCCCTAGAAGCATGTCAATTAACTCTTTGA

mRNA sequence

ATGATTCTGTTTATCTTTGATATCAAATTAGCTTTATCAAAATGGTGCATTTCCCACCGGAAAAAGGCCAAGCAGATTGTCGAAACATGGGATAAATTATTCAACTCATCGCAGAAAGAGCAGCGTGTTTCATTTCTGTATTTGGCAAATGATATTTTGCAAAACAGCAGGCGCAAGGGAAGTGAATTTGTGAACGAATTCTGGAAAGTTCTTCCTGGTGCCCTCAAGTATGTATACGATCATGGCGACGAAAGTGGAAAGAAAGCAGTTGCCAGACTTGTATGTCTTCTTTTTACTTGTGCAGAAAAAAAAATGGCAATAAACCTTCATATGTTTTTCCCCCTAGAAGCATGTCAATTAACTCTTTGA

Coding sequence (CDS)

ATGATTCTGTTTATCTTTGATATCAAATTAGCTTTATCAAAATGGTGCATTTCCCACCGGAAAAAGGCCAAGCAGATTGTCGAAACATGGGATAAATTATTCAACTCATCGCAGAAAGAGCAGCGTGTTTCATTTCTGTATTTGGCAAATGATATTTTGCAAAACAGCAGGCGCAAGGGAAGTGAATTTGTGAACGAATTCTGGAAAGTTCTTCCTGGTGCCCTCAAGTATGTATACGATCATGGCGACGAAAGTGGAAAGAAAGCAGTTGCCAGACTTGTATGTCTTCTTTTTACTTGTGCAGAAAAAAAAATGGCAATAAACCTTCATATGTTTTTCCCCCTAGAAGCATGTCAATTAACTCTTTGA

Protein sequence

MILFIFDIKLALSKWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDESGKKAVARLVCLLFTCAEKKMAINLHMFFPLEACQLTL*

Homology

[Close]

BLAST of Csa3G815490 vs. Swiss-Prot
Match: RPR1A_BOVIN (Regulation of nuclear pre-mRNA domain-containing protein 1A OS=Bos taurus GN=RPRD1A PE=2 SV=2)

HSP 1 Score: 79.3 bits (194), Expect = 3.2e-14
Identity = 36/85 (42.35%), Postives = 54/85 (63.53%), Query Frame = 1


Query: 12  LSKWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVL 71
           LS W I HRK ++ IV  W++    ++  ++++FLYLAND++QNS+RKG EF  +F  V+
Sbjct: 26  LSLWLIHHRKHSRPIVTVWERELRKAKPNRKLTFLYLANDVIQNSKRKGPEFTKDFAPVI 85

Query: 72  PGALKYVYDHGDESGKKAVARLVCL 97
             A K+V    DES KK + R++ +
Sbjct: 86  VEAFKHVSSETDESCKKHLGRVLSI 110

[Close]

BLAST of Csa3G815490 vs. Swiss-Prot
Match: RPR1A_HUMAN (Regulation of nuclear pre-mRNA domain-containing protein 1A OS=Homo sapiens GN=RPRD1A PE=1 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 3.2e-14
Identity = 36/85 (42.35%), Postives = 54/85 (63.53%), Query Frame = 1


Query: 12  LSKWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVL 71
           LS W I HRK ++ IV  W++    ++  ++++FLYLAND++QNS+RKG EF  +F  V+
Sbjct: 26  LSLWLIHHRKHSRPIVTVWERELRKAKPNRKLTFLYLANDVIQNSKRKGPEFTKDFAPVI 85

Query: 72  PGALKYVYDHGDESGKKAVARLVCL 97
             A K+V    DES KK + R++ +
Sbjct: 86  VEAFKHVSSETDESCKKHLGRVLSI 110

[Close]

BLAST of Csa3G815490 vs. Swiss-Prot
Match: RPR1A_MOUSE (Regulation of nuclear pre-mRNA domain-containing protein 1A OS=Mus musculus GN=Rprd1a PE=1 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 3.2e-14
Identity = 36/85 (42.35%), Postives = 54/85 (63.53%), Query Frame = 1


Query: 12  LSKWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVL 71
           LS W I HRK ++ IV  W++    ++  ++++FLYLAND++QNS+RKG EF  +F  V+
Sbjct: 26  LSLWLIHHRKHSRPIVTVWERELRKAKPNRKLTFLYLANDVIQNSKRKGPEFTKDFAPVI 85

Query: 72  PGALKYVYDHGDESGKKAVARLVCL 97
             A K+V    DES KK + R++ +
Sbjct: 86  VEAFKHVSSETDESCKKHLGRVLSI 110

[Close]

BLAST of Csa3G815490 vs. Swiss-Prot
Match: RPR1A_PONAB (Regulation of nuclear pre-mRNA domain-containing protein 1A OS=Pongo abelii GN=RPRD1A PE=2 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 3.2e-14
Identity = 36/85 (42.35%), Postives = 54/85 (63.53%), Query Frame = 1


Query: 12  LSKWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVL 71
           LS W I HRK ++ IV  W++    ++  ++++FLYLAND++QNS+RKG EF  +F  V+
Sbjct: 26  LSLWLIHHRKHSRPIVTVWERELRKAKPNRKLTFLYLANDVIQNSKRKGPEFTKDFAPVI 85

Query: 72  PGALKYVYDHGDESGKKAVARLVCL 97
             A K+V    DES KK + R++ +
Sbjct: 86  VEAFKHVSSETDESCKKHLGRVLSI 110

[Close]

BLAST of Csa3G815490 vs. Swiss-Prot
Match: RPR1B_HUMAN (Regulation of nuclear pre-mRNA domain-containing protein 1B OS=Homo sapiens GN=RPRD1B PE=1 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 5.4e-14
Identity = 38/83 (45.78%), Postives = 49/83 (59.04%), Query Frame = 1


Query: 12  LSKWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVL 71
           LS W I HRK A  IV  W +    ++  ++++FLYLAND++QNS+RKG EF  EF  VL
Sbjct: 26  LSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKRKGPEFTREFESVL 85

Query: 72  PGALKYVYDHGDESGKKAVARLV 95
             A  +V    DE  KK + RL+
Sbjct: 86  VDAFSHVAREADEGCKKPLERLL 108

[Close]

BLAST of Csa3G815490 vs. TrEMBL
Match: A0A0A0LBI8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G815490 PE=4 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 8.9e-64
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 1


Query: 1   MILFIFDIKLALSKWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKG 60
           MILFIFDIKLALSKWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKG
Sbjct: 1   MILFIFDIKLALSKWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKG 60

Query: 61  SEFVNEFWKVLPGALKYVYDHGDESGKKAVARLVCLLFTCAEKKMAINLHMFFPLEACQL 120
           SEFVNEFWKVLPGALKYVYDHGDESGKKAVARLVCLLFTCAEKKMAINLHMFFPLEACQL
Sbjct: 61  SEFVNEFWKVLPGALKYVYDHGDESGKKAVARLVCLLFTCAEKKMAINLHMFFPLEACQL 120

Query: 121 TL 123
           TL
Sbjct: 121 TL 122

[Close]

BLAST of Csa3G815490 vs. TrEMBL
Match: A0A061F7B0_THECC (ENTH/VHS family protein OS=Theobroma cacao GN=TCM_025762 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.2e-36
Identity = 76/84 (90.48%), Postives = 82/84 (97.62%), Query Frame = 1


Query: 11  ALSKWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 70
           +LS+WCI+HRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV
Sbjct: 27  SLSRWCITHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 86

Query: 71  LPGALKYVYDHGDESGKKAVARLV 95
           LPGALK+VY++GDE GKKAV RLV
Sbjct: 87  LPGALKHVYENGDEYGKKAVTRLV 110

[Close]

BLAST of Csa3G815490 vs. TrEMBL
Match: A5C0Y8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012976 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 7.8e-36
Identity = 80/107 (74.77%), Postives = 89/107 (83.18%), Query Frame = 1


Query: 7   DIKLALSKWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNE 66
           ++   LS+WCISHRKKAKQIVETWDKLFNSSQKEQ VSFLYLANDILQNSRRKGSEFVNE
Sbjct: 577 EVVTTLSRWCISHRKKAKQIVETWDKLFNSSQKEQCVSFLYLANDILQNSRRKGSEFVNE 636

Query: 67  FWKVLPGALKYVYDHGDESGKKAVARLVCLLFTCAEKKMAINLHMFF 114
           FWKVLP ALK+VYD+GDE GKKAV+RLV  +     K++   L M F
Sbjct: 637 FWKVLPLALKHVYDNGDEYGKKAVSRLVPXIDWVPPKRVKDMLIMSF 683

[Close]

BLAST of Csa3G815490 vs. TrEMBL
Match: V4SRT7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10031118mg PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.0e-35
Identity = 75/84 (89.29%), Postives = 80/84 (95.24%), Query Frame = 1


Query: 11  ALSKWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 70
           +LS+WCI+HRKKAKQIVETWDK FNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV
Sbjct: 27  SLSRWCITHRKKAKQIVETWDKSFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 86

Query: 71  LPGALKYVYDHGDESGKKAVARLV 95
           LP ALK+VYD+GDE GKKAV RLV
Sbjct: 87  LPAALKHVYDNGDEYGKKAVTRLV 110

[Close]

BLAST of Csa3G815490 vs. TrEMBL
Match: F6HMV0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0056g00770 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 1.7e-35
Identity = 76/84 (90.48%), Postives = 81/84 (96.43%), Query Frame = 1


Query: 11  ALSKWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 70
           +LS+WCISHRKKAKQIVETWDKLFNSSQKEQ VSFLYLANDILQNSRRKGSEFVNEFWKV
Sbjct: 133 SLSRWCISHRKKAKQIVETWDKLFNSSQKEQCVSFLYLANDILQNSRRKGSEFVNEFWKV 192

Query: 71  LPGALKYVYDHGDESGKKAVARLV 95
           LP ALK+VYD+GDE GKKAV+RLV
Sbjct: 193 LPLALKHVYDNGDEYGKKAVSRLV 216

[Close]

BLAST of Csa3G815490 vs. TAIR10
Match: AT3G26990.1 (AT3G26990.1 ENTH/VHS family protein)

HSP 1 Score: 115.5 bits (288), Expect = 2.3e-26
Identity = 52/83 (62.65%), Postives = 65/83 (78.31%), Query Frame = 1


Query: 12  LSKWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVL 71
           LS WCI H  KAK +VETW + F+ + +EQR+++LYLANDILQNSRRKGSEFV EFWKVL
Sbjct: 27  LSHWCIFHMNKAKHVVETWGRQFHCAPREQRLAYLYLANDILQNSRRKGSEFVGEFWKVL 86

Query: 72  PGALKYVYDHGDESGKKAVARLV 95
           P AL+ + ++GD+ G+K+  RLV
Sbjct: 87  PDALRDMIENGDDFGRKSARRLV 109

[Close]

BLAST of Csa3G815490 vs. TAIR10
Match: AT5G65180.1 (AT5G65180.1 ENTH/VHS family protein)

HSP 1 Score: 111.3 bits (277), Expect = 4.2e-25
Identity = 52/83 (62.65%), Postives = 64/83 (77.11%), Query Frame = 1


Query: 12  LSKWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVL 71
           LS+WCI HR +A+ +V TW+K F+S+Q  Q+V  LYLANDILQNS+R+G+EFV EFWKVL
Sbjct: 27  LSQWCIVHRSEAELVVTTWEKQFHSTQIGQKVPLLYLANDILQNSKRQGNEFVQEFWKVL 86

Query: 72  PGALKYVYDHGDESGKKAVARLV 95
           PGALK +   GD+ GK  V+RLV
Sbjct: 87  PGALKDIVSLGDDYGKGVVSRLV 109

[Close]

BLAST of Csa3G815490 vs. TAIR10
Match: AT5G10060.1 (AT5G10060.1 ENTH/VHS family protein)

HSP 1 Score: 110.2 bits (274), Expect = 9.5e-25
Identity = 50/83 (60.24%), Postives = 64/83 (77.11%), Query Frame = 1


Query: 12  LSKWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVL 71
           LS WCI +R KA+ IV TW+K F+S++ +Q+V  LYLANDILQNS+R+G+EFV EFW VL
Sbjct: 27  LSHWCIFNRSKAELIVTTWEKQFHSTEMDQKVPLLYLANDILQNSKRQGNEFVQEFWNVL 86

Query: 72  PGALKYVYDHGDESGKKAVARLV 95
           P ALK +   GD++GK AVAR++
Sbjct: 87  PKALKDIVSQGDDNGKSAVARVI 109

[Close]

BLAST of Csa3G815490 vs. NCBI nr
Match: gi|700204252|gb|KGN59385.1| (hypothetical protein Csa_3G815490 [Cucumis sativus])

HSP 1 Score: 250.8 bits (639), Expect = 1.3e-63
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 1


Query: 1   MILFIFDIKLALSKWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKG 60
           MILFIFDIKLALSKWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKG
Sbjct: 1   MILFIFDIKLALSKWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKG 60

Query: 61  SEFVNEFWKVLPGALKYVYDHGDESGKKAVARLVCLLFTCAEKKMAINLHMFFPLEACQL 120
           SEFVNEFWKVLPGALKYVYDHGDESGKKAVARLVCLLFTCAEKKMAINLHMFFPLEACQL
Sbjct: 61  SEFVNEFWKVLPGALKYVYDHGDESGKKAVARLVCLLFTCAEKKMAINLHMFFPLEACQL 120

Query: 121 TL 123
           TL
Sbjct: 121 TL 122

[Close]

BLAST of Csa3G815490 vs. NCBI nr
Match: gi|449437658|ref|XP_004136608.1| (PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 1B-like [Cucumis sativus])

HSP 1 Score: 172.9 bits (437), Expect = 3.4e-40
Identity = 83/84 (98.81%), Postives = 84/84 (100.00%), Query Frame = 1


Query: 11  ALSKWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 70
           +LSKWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV
Sbjct: 27  SLSKWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 86

Query: 71  LPGALKYVYDHGDESGKKAVARLV 95
           LPGALKYVYDHGDESGKKAVARLV
Sbjct: 87  LPGALKYVYDHGDESGKKAVARLV 110

[Close]

BLAST of Csa3G815490 vs. NCBI nr
Match: gi|659084984|ref|XP_008443180.1| (PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 1B-like [Cucumis melo])

HSP 1 Score: 172.9 bits (437), Expect = 3.4e-40
Identity = 83/84 (98.81%), Postives = 84/84 (100.00%), Query Frame = 1


Query: 11  ALSKWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 70
           +LSKWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV
Sbjct: 27  SLSKWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 86

Query: 71  LPGALKYVYDHGDESGKKAVARLV 95
           LPGALKYVYDHGDESGKKAVARLV
Sbjct: 87  LPGALKYVYDHGDESGKKAVARLV 110

[Close]

BLAST of Csa3G815490 vs. NCBI nr
Match: gi|590640232|ref|XP_007029897.1| (ENTH/VHS family protein [Theobroma cacao])

HSP 1 Score: 160.6 bits (405), Expect = 1.7e-36
Identity = 76/84 (90.48%), Postives = 82/84 (97.62%), Query Frame = 1


Query: 11  ALSKWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 70
           +LS+WCI+HRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV
Sbjct: 27  SLSRWCITHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 86

Query: 71  LPGALKYVYDHGDESGKKAVARLV 95
           LPGALK+VY++GDE GKKAV RLV
Sbjct: 87  LPGALKHVYENGDEYGKKAVTRLV 110

[Close]

BLAST of Csa3G815490 vs. NCBI nr
Match: gi|147828708|emb|CAN66227.1| (hypothetical protein VITISV_012976 [Vitis vinifera])

HSP 1 Score: 157.9 bits (398), Expect = 1.1e-35
Identity = 80/107 (74.77%), Postives = 89/107 (83.18%), Query Frame = 1


Query: 7   DIKLALSKWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNE 66
           ++   LS+WCISHRKKAKQIVETWDKLFNSSQKEQ VSFLYLANDILQNSRRKGSEFVNE
Sbjct: 577 EVVTTLSRWCISHRKKAKQIVETWDKLFNSSQKEQCVSFLYLANDILQNSRRKGSEFVNE 636

Query: 67  FWKVLPGALKYVYDHGDESGKKAVARLVCLLFTCAEKKMAINLHMFF 114
           FWKVLP ALK+VYD+GDE GKKAV+RLV  +     K++   L M F
Sbjct: 637 FWKVLPLALKHVYDNGDEYGKKAVSRLVPXIDWVPPKRVKDMLIMSF 683

The following BLAST results are available for this feature:

BLAST of Csa3G815490 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RPR1A_BOVIN	3.2e-14	42.35	Regulation of nuclear pre-mRNA domain-containing protein 1A OS=Bos taurus GN=RPR...	[more]
RPR1A_HUMAN	3.2e-14	42.35	Regulation of nuclear pre-mRNA domain-containing protein 1A OS=Homo sapiens GN=R...	[more]
RPR1A_MOUSE	3.2e-14	42.35	Regulation of nuclear pre-mRNA domain-containing protein 1A OS=Mus musculus GN=R...	[more]
RPR1A_PONAB	3.2e-14	42.35	Regulation of nuclear pre-mRNA domain-containing protein 1A OS=Pongo abelii GN=R...	[more]
RPR1B_HUMAN	5.4e-14	45.78	Regulation of nuclear pre-mRNA domain-containing protein 1B OS=Homo sapiens GN=R...	[more]

BLAST of Csa3G815490 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBI8_CUCSA	8.9e-64	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G815490 PE=4 SV=1	[more]
A0A061F7B0_THECC	1.2e-36	90.48	ENTH/VHS family protein OS=Theobroma cacao GN=TCM_025762 PE=4 SV=1	[more]
A5C0Y8_VITVI	7.8e-36	74.77	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012976 PE=4 SV=1	[more]
V4SRT7_9ROSI	1.0e-35	89.29	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10031118mg PE=4 SV=1	[more]
F6HMV0_VITVI	1.7e-35	90.48	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0056g00770 PE=4 SV=...	[more]

BLAST of Csa3G815490 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G26990.1	2.3e-26	62.65	ENTH/VHS family protein	[more]
AT5G65180.1	4.2e-25	62.65	ENTH/VHS family protein	[more]
AT5G10060.1	9.5e-25	60.24	ENTH/VHS family protein	[more]

BLAST of Csa3G815490 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700204252\|gb\|KGN59385.1\|	1.3e-63	100.00	hypothetical protein Csa_3G815490 [Cucumis sativus]	[more]
gi\|449437658\|ref\|XP_004136608.1\|	3.4e-40	98.81	PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 1B-like [Cuc...	[more]
gi\|659084984\|ref\|XP_008443180.1\|	3.4e-40	98.81	PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 1B-like [Cuc...	[more]
gi\|590640232\|ref\|XP_007029897.1\|	1.7e-36	90.48	ENTH/VHS family protein [Theobroma cacao]	[more]
gi\|147828708\|emb\|CAN66227.1\|	1.1e-35	74.77	hypothetical protein VITISV_012976 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006569	CID_dom
IPR006903	RNA_pol_II-bd
IPR008942	ENTH_VHS

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G815490.1	Csa3G815490.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006569	CID domain	SMART	SM00582	558neu5	coord: 3..108 score: 1.2
IPR006569	CID domain	PROFILE	PS51391	CID	coord: 1..122 score: 24
IPR006903	RNA polymerase II-binding domain	PFAM	PF04818	CTD_bind	coord: 42..94 score: 3.2
IPR008942	ENTH/VHS	GENE3D	G3DSA:1.25.40.90		coord: 12..94 score: 2.
IPR008942	ENTH/VHS	unknown	SSF48464	ENTH/VHS domain	coord: 10..94 score: 3.66
None	No IPR available	PANTHER	PTHR12460	CYCLIN-DEPENDENT KINASE INHIBITOR-RELATED PROTEIN	coord: 12..94 score: 6.2
None	No IPR available	PANTHER	PTHR12460:SF4	ENTH/VHS FAMILY PROTEIN	coord: 12..94 score: 6.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa3G815490	Cla017467	Watermelon (97103) v1	cuwmB198
Csa3G815490	MELO3C009704	Melon (DHL92) v3.5.1	cumeB223
Csa3G815490	ClCG10G016730	Watermelon (Charleston Gray)	cuwcgB194
Csa3G815490	Lsi03G016620	Bottle gourd (USVL1VR-Ls)	culsiB186
Csa3G815490	MELO3C009704.2	Melon (DHL92) v3.6.1	cumedB207
Csa3G815490	Cla97C10G199590	Watermelon (97103) v2	cuwmbB186
Csa3G815490	Bhi11G002275	Wax gourd	cuwgoB223
Csa3G815490	Cucsa.337280	Cucumber (Gy14) v1	cgycuB478
Csa3G815490	CmaCh14G004700	Cucurbita maxima (Rimu)	cmacuB239
Csa3G815490	CmaCh06G000570	Cucurbita maxima (Rimu)	cmacuB826
Csa3G815490	CmoCh06G000490	Cucurbita moschata (Rifu)	cmocuB816
Csa3G815490	CmoCh14G004760	Cucurbita moschata (Rifu)	cmocuB226
Csa3G815490	Cp4.1LG03g04350	Cucurbita pepo (Zucchini)	cpecuB611
Csa3G815490	Cp4.1LG08g13750	Cucurbita pepo (Zucchini)	cpecuB864
Csa3G815490	Carg03521	Silver-seed gourd	carcuB0276
Csa3G815490	Carg01269	Silver-seed gourd	carcuB0172

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G815490	Cucumber (Gy14) v2	cgybcuB110
Csa3G815490	Wax gourd	cuwgoB331
Csa3G815490	Cucurbita pepo (Zucchini)	cpecuB597