Cla017467 (gene) Watermelon (97103) v1

Overview
NameCla017467
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionRegulation of nuclear pre-mRNA domain containing 1B (AHRD V1 *--- B5DEK0_RAT); contains Interpro domain(s) IPR006903 Protein of unknown function DUF618
LocationChr10 : 22878375 .. 22884223 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCTGTTTATCTTTGATATCAAATTAGCTTTATCAAGATGGTGCATTTCCCACCGGAAAAAGGCCAAGCAGATTGTTGAAACATGGGATAAATTGTTCAACTCATCTCAGAAAGAGCAGCGTGTTTCATTTCTGTATTTGGCGAATGACATTTTGCAGAACAGCAGGCGCAAGGGGAGTGAATTTGTGAATGAATTCTGGAAAGTTCTTCCTGGTGCTCTCAAGTATGTCTATGATCATGGTGATGAAGGTGGAAAGAAAGCAGTTGCCAGACTTGTACGTCTTCTTTTTACTTGTGTAGAAAAAAATGATGGCAATAAATCTTCTTATGTTTTTATTTCTGTAAGCATGTCAGTTAACTCTGGGAACATGTTGCTCAAAAGTAAAACATTTTGCATTTCTGGGTATCTAACTTAAAAATTCTTCTCCTCCTTTACCTCTCCAAAAAAGAAAAAAAAAGGTGAAGAAGAAAAACGAACAAGGGGGGATGGATTCCATTCATCCAGCTTGACAAGTTTGTATCATAAATATTTCTATTAAGGCTTCCCAAAGATTGGCATTGGTAATGGTAATAAAACTCTCATTTCTACTTAAGCAAGTCTTTTGATTATGGTGTTCCATGAGTACTGTGGGTGCTCAATTGACGATAATTCCTAAAGCTTGTATCTTAGTTAGGAATGATCTAGTAAATTCTAGATATGTTGGTTTAAAATTTCAGTTTGAAGCATAATATGTGGCCGCTTTTCCCTCCCTTACTGTTTGATTTGTTATACTAAAAGTGTTTCTATTAATGACAAATTATTATAAAAGAAGACAAAATATTAAACACTATGAAATGATCCTCGAAGTTGGCCACCAGAAGGAGTTGTCGGAGGTAGCCGTCGTCGAAATTGGGTGTCGTAGGTGGTCTTTGCTGGGGTTGGCTGCCAAAGTGATATCGAGTTAGCCGTCAGAGTTGGTCGCATAGAGGGTCATCAGACGTGAACGCAAAGTTGGCCGCTGGAGGTAGTCGTTGTCGAGTTGGAGGTGGTTATCTCCGAAATTGGGCATCGGAGGTAGCCTTTGCCAGAGTTGTCCATTGCATTCGAGTCGTCAGAGTTGGTCGTAAATGGGTGGAGTCAATGGAAGCATTGGAGGGAGGGAGAGATTATTTTAACCATTGAGTTGTAAATAGTTTTGTTGTAGGAAAGGGGGTTTAAAATACTCTTACTCTCTATTACTTTAACACGCCCCAAACGCTTGGGTGAGCTAGGCACTCAACCCACTCCAAGTTGGAGCCCCACATACCCTTTCAATGTTCTTCTATTTATTTCTCTATTTTAGACTTTGCTATTTATATTTAAATGTTGTTTATCAAATTGGAATTTATGATACATGATGATTTCGATATGCGTTCTGTTTCACAAGTTAACAACCTTGTCCAAGACAACCCGAAAATAACAACACCCAAAACCTCTGACATACCAAGACGAACCACGCATTGCAGGACAATCATTATAGACTAGTGAAACACCAACTCATGGTCTTATATTCTTGTCAATGTAAGACCGAAGAAAAATTTGTGTTACTTGATGTCTTCCTTATACTGGTGGATGTTCTAAGTAATTGTTGATCATGTGACATTGGTTGATATTGGAAAATTTAGTTGGACTGGGATATCCTAATAAGCCTTACCCTTAGGGAAGATACTATACACTAGTTGGAAATTGAGTAGTGTTATCGTATAGTTGTCTTATTAGGTCTTTGGGAAGATTTTATGTTTACAAGATTCTTAAGAGATCTTATTTTTAATTCTTAAGCTAATTTTAGGAGGTGGTCAAGAAGTTTGTGGACCTTGGGGGTTTTTTTTTGAAACCATTTGAATCGACATGTATTAGATAATTAAATTTACCTCTTGTCTTGGTTCAATTGTTCTACAAAACCACATGGAGAATCGAGAAAGTTAATTAGCTCAAACGAAAAACACTCGAGCCGAAGAAGGAATTATATATTATTGAGGGTTTTTAAATTTCAATATTAACAAAAACACTCGAGCCAAAGAAGGAATTATATATTATTGAGGGTTTTTAAATTTCAATATTAACAAAAACACGCGAGCCGAAGAAGGAATTATACTGATCATTTTTGTGTCGCCGGTGGGTTCTTTTGCCGAAGAAGGAATTATATATTATTGAGGGTTTTTAAATTTCAATATTAACAAAAATTTCGACCTTGGGGGATTAAGCATTGGATAAGTAATTTAAGGGTGCAAAACAAGGTCTTGTAGGCTAAATGGTTGTTGTGTTTCCATCATGAATCTGACACCTTATGGCACAAAGTCAATGTAAGCAAGTATGGTCCTCACCAGTATAAGTGGACCTTGGGCAGGTTTGAAGGTTCTTAAAGAAACTCTTGGAAATATATTTCTATTGAGCTCTCTTACCTTTGTCACTTTGTTGATGAGAGGGATATCTACTTTTGGGAGGATAGACTCATTTGTTCTTTTCAAACTCCATCATTCAAAAGGTCACCCGAGTTTCCTTCATGTAAATTTTCCTTAATTAACTCTTATCAAATTCCCTAAGTTCTCCTCCCTCCTCCTTGATTGAAGCTGGTGGAAAAGATCTTTTTCTTATGGCCGTTGGTTAAAAAGAATGGTTTGAGTCTTCGTTGTCGTGTTTAGTTTCTAATTTTTTGGTTGCTAATGAAGAGTTTGCTGCTTACAAATCTGGCTTCGGCTTTCTTTTCTTGTTTTGGAATGATACTTGGTTGAGTCTTCCTCGTGTATTTGGGTTTGCTCATTTGACAAGTGTTTCGGTTGCATCTTTTTGGTTTGGAGATTCTATGCCTTGGGGTTTTAGAAGGCTTAAAGATGCATATTTGTGTATCTTCAGCAGCTACTTCATGTTTAATCAAGTTCAAAGATGGGGGTTCTTCCTATTTTAAGTTGTTGGTAGCTGGAGTCGTCTGGGAAGTTGCCTTCTATCTAAGATATTTGTATTTTCCCTTTTCAAGTTATAGTTTTGATTTGGGGGGTATTTTTCTCTTACGTGCAATAACTGGGATGAGCTGCTCACATTTTGTTGTATTCCATCTATTCTTGAATTTTCTTTTTCTATGTATTTTGAGCCTTAGTCTCTTTTCATTATATCAATGAAAAGTTTTGTTTCCTTTATAAAAAAAAAAAAAAAGAACTTTTGAGAGAATAGACTCATCTGTTCTTTGTTTTCCCATTTATATTAGTTATCCTCTACGAGGAACCACTCAGAGGCTATTATCTTTCTCACTTTGGGATCTATCTTTCGCCTTTGTTGGGGTTTTGTCATCTGTTATCCAATAGGGTAACAACAATTATTTTTGGCTCTTTTGTCTTCAATTAGAAAGTTTTGCGTTATTCGTGTGAGAAGAAATGTTCGCCTTAAAGACTTTTCTTATAGTTCCTTCTTTCACCATATGTTATGTCCATACCCTTCTAGCGGTCATGTCTTTCCTTACTATAGAAAGTGAAAAATCTAACGAACGTTAATTTTTTGTGTGGCAAGTCATGCATGGAAGAGTAAAACCTTGGATTAGATTTTGGGGAAGATGTCCCTAGGTAGCCTAAGAGGTTAAAGGAGATAATTTTCCAAAAATCAAATAAAAAACTTTTTTATTTATCAGAAGTATTTAATACATGAGGGTGCTTATAGTCTTGTTTCCTTAGTTCACTATAGCAATGAATAGTCTTGTTTCCATTTAAAAAAAAAAAAACATGAGAATGCTTATAGTGCTATTGTTCTTTCATGGTCAATCTTTGATTTTGTATTGGGTTGTGGATGCTTATAGTGCTATTGTTGTTTTTTTTTTTTCTTTTATTTTTGTTTCCTTGTAATTTTGAGCGTTAGTCTTTTTTCATCATACCAATGAAAAGTTTTGTTTCTTTTCAAAGAAAAAAACCCTACAACTATGGTATTTCTAATTCAAATCCCTCTTTGTTACAGTTTTTGTTGCTTACTATTTCTTACTCATTATCTTTTTTCCTCTTATTTCCTACCTAGATTAAACTGGTCTGCACCCTAAACACAAATTATTATATCCCGGACTAAAATATTATGCTTCTCAAACACAAAGTAATATAACCTACATACTATAATAACCACCTTCGCGTCCCGTCCCCTTAGGTCTTATTTTACTTGATCAAAGCCTATTTTATCAATTTGACTTCTTTTCTCCGTGAGCTTTATTTTTGTTTGTCCTTGTATTTTTTTCATTTTTTTTCTATGAAAATTTGATTTCATTAAAAAAAAAGAACCACCCGCATTGAAAAATGTTTTCGGGAAGGATGCCGATGAGATTTTCAAAGAGGATGCTTGAATGGATGATGTTTGTGTTAGTAGTTTTACTTTAGACATTTGATCCAAGCTTGAGAGTTGATGAAGAGTCTTTTGGAGATGGTTTAAATCTTCTTATCCATAATGAGCAATCTGGTTTGGAAGATAGAGCTTGGGTTATCTAAGGGTCGTCCCCATTAGCAGATTTCTTTGTTTTCCCTCTATTGCATGGGATTAAGATGTTTTTGCATTATTTTGAAGCATGCAGCATCACTCTCTAAGAAATAAAGCCTAAGAATTTGTGTTAGTTATGGAGGAGCTTTCTTCATGGATTAAAATGTTGCTCTTCTTTTGCGTTGGTGGTGTTTTGAGTTAGGCCTTTTCATTTGAATCTTGTTTTAGGATGATTTTTGCCACTTTTCAGGCTGTTTTTAAAGGAATACATGGTTCATGCCTTAGGTTTGGGGAGGCTTTCTTTACCTGTTTGGTTGGTTGTATTTTTTTTCTTTTTTAAATCTTCTATAGCCAATTGGGAGTTTGTTTCATTGAACTTTTGTGTTCTTTTCATCTTTAAATGAGAAGTAGTTTCTTGTTCCAGAAACACAATGTCTCGCTACAAATGTGTTCGTTGCATAGTCCACGTGCATTATTTCAATTTGCTTTTTTAAATACCGGTTGCATATAACTGTGACTTTGACGTACAAATTTCGATTTCTTTTTCATGAAAAAGCATGTTATATTTTGATAGACATAGAACTAATGAAAGTTAATACACTTTCTTTTTGGGTTACAGATCACTGTAGATTGACATTTCCTTCTAAATCATCCTCCTTTCGTGCATTTTTGTTTTTGTTTTTGTTTTGTCTTGTTTTGTTTTGCTTGAAATCCACAAGCCCTGTAATGTTGATTTAAATTGTAATAGTAAGATTGACCAGTTCCTCCCTTCCCCTCTTCTTATGCTTTTATCTCGAGGGTTATTTTTTAAGTTGGGATTTCATTTCTCACTCAATTTTTTCTCCCTTGTTTCCCTTCATGGGAGTTGGTTTGTTAAGGTCAACATTTGGGAAGAAAGGAAGGTTTTTGGTTCTCGGGGTCAGAGTCTTAAGGATGAAATGCTTGGTAAAATTCCACCTCCAACTCAATTACCCAGCAGCAATGGGAAGAGTTCAAATCCTATAAAGATAGTGAAGAGGGATGCCCACTCTGTGAGAATTGTAAGAGCTTAGCTGTGGTAGCAGCGAACTATTGCAATTTCCATTTTATTTCTTGTGTTATGACTTCTATATCTTTATTGCTTAACTCTAGAAACTGGCTGTTGGAGGTGTTCCAGAAAAGATTCTTACTGCATTTCAATCTGTACTTGATGAACATCTGAATGAAGATGCTGCTCTGAACAACTGTAGTTCTGCTACTCATCATCTGAATCAAATTGAGGAAGACTTAAATGCTTCCTTAGCTCAAGGTATAACCTCATTTACTATAGTCATCTCGTGCAATTTAAGTTTAAGATGTTGTTGTGAAGTAAAGCTCTGCATTATAAGGATTGTCTTTTGTTAG

mRNA sequence

ATGAATCTGTTTATCTTTGATATCAAATTAGCTTTATCAAGATGGTGCATTTCCCACCGGAAAAAGGCCAAGCAGATTGTTGAAACATGGGATAAATTGTTCAACTCATCTCAGAAAGAGCAGCGTGTTTCATTTCTGTATTTGGCGAATGACATTTTGCAGAACAGCAGGCGCAAGGGGAGTGAATTTGTGAATGAATTCTGGAAAGTTCTTCCTGGTGCTCTCAAGTATGTCTATGATCATGGTGATGAAGGTGGAAAGAAAGCAGTTGCCAGACTTGTCAACATTTGGGAAGAAAGGAAGGTTTTTGGTTCTCGGGGTCAGAGTCTTAAGGATGAAATGCTTGGTAAAATTCCACCTCCAACTCAATTACCCAGCAGCAATGGGAAGAGTTCAAATCCTATAAAGATAGTGAAGAGGGATGCCCACTCTGTGAGAATTAAACTGGCTGTTGGAGGTGTTCCAGAAAAGATTCTTACTGCATTTCAATCTGTACTTGATGAACATCTGAATGAAGATGCTGCTCTGAACAACTGTAGTTCTGCTACTCATCATCTGAATCAAATTGAGGAAGACTTAAATGCTTCCTTAGCTCAAGGTATAACCTCATTTACTATAGTCATCTCGTGCAATTTAAGTTTAAGATGTTGTTGTGAAGTAAAGCTCTGCATTATAAGGATTGTCTTTTGTTAG

Coding sequence (CDS)

ATGAATCTGTTTATCTTTGATATCAAATTAGCTTTATCAAGATGGTGCATTTCCCACCGGAAAAAGGCCAAGCAGATTGTTGAAACATGGGATAAATTGTTCAACTCATCTCAGAAAGAGCAGCGTGTTTCATTTCTGTATTTGGCGAATGACATTTTGCAGAACAGCAGGCGCAAGGGGAGTGAATTTGTGAATGAATTCTGGAAAGTTCTTCCTGGTGCTCTCAAGTATGTCTATGATCATGGTGATGAAGGTGGAAAGAAAGCAGTTGCCAGACTTGTCAACATTTGGGAAGAAAGGAAGGTTTTTGGTTCTCGGGGTCAGAGTCTTAAGGATGAAATGCTTGGTAAAATTCCACCTCCAACTCAATTACCCAGCAGCAATGGGAAGAGTTCAAATCCTATAAAGATAGTGAAGAGGGATGCCCACTCTGTGAGAATTAAACTGGCTGTTGGAGGTGTTCCAGAAAAGATTCTTACTGCATTTCAATCTGTACTTGATGAACATCTGAATGAAGATGCTGCTCTGAACAACTGTAGTTCTGCTACTCATCATCTGAATCAAATTGAGGAAGACTTAAATGCTTCCTTAGCTCAAGGTATAACCTCATTTACTATAGTCATCTCGTGCAATTTAAGTTTAAGATGTTGTTGTGAAGTAAAGCTCTGCATTATAAGGATTGTCTTTTGTTAG

Protein sequence

MNLFIFDIKLALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDEGGKKAVARLVNIWEERKVFGSRGQSLKDEMLGKIPPPTQLPSSNGKSSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQSVLDEHLNEDAALNNCSSATHHLNQIEEDLNASLAQGITSFTIVISCNLSLRCCCEVKLCIIRIVFC
Homology
[Close]
BLAST of Cla017467 vs. Swiss-Prot
Match: RPR1B_HUMAN (Regulation of nuclear pre-mRNA domain-containing protein 1B OS=Homo sapiens GN=RPRD1B PE=1 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 8.6e-21
Identity = 54/112 (48.21%), Postives = 67/112 (59.82%), Query Frame = 1 

Query: 12  LSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVL 71
           LS W I HRK A  IV  W +    ++  ++++FLYLAND++QNS+RKG EF  EF  VL
Sbjct: 26  LSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKRKGPEFTREFESVL 85

Query: 72  PGALKYVYDHGDEGGKKAVARLVNIWEERKVFGSRG-QSLKDEML-GKIPPP 122
             A  +V    DEG KK + RL+NIW+ER V+G    Q LK  M   K PPP
Sbjct: 86  VDAFSHVAREADEGCKKPLERLLNIWQERSVYGGEFIQQLKLSMEDSKSPPP 137

[Close]
BLAST of Cla017467 vs. Swiss-Prot
Match: RPR1B_MOUSE (Regulation of nuclear pre-mRNA domain-containing protein 1B OS=Mus musculus GN=Rprd1b PE=1 SV=2)

HSP 1 Score: 102.1 bits (253), Expect = 8.6e-21
Identity = 54/112 (48.21%), Postives = 67/112 (59.82%), Query Frame = 1 

Query: 12  LSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVL 71
           LS W I HRK A  IV  W +    ++  ++++FLYLAND++QNS+RKG EF  EF  VL
Sbjct: 26  LSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKRKGPEFTREFESVL 85

Query: 72  PGALKYVYDHGDEGGKKAVARLVNIWEERKVFGSRG-QSLKDEML-GKIPPP 122
             A  +V    DEG KK + RL+NIW+ER V+G    Q LK  M   K PPP
Sbjct: 86  VDAFSHVAREADEGCKKPLERLLNIWQERSVYGGEFIQQLKLSMEDSKSPPP 137

[Close]
BLAST of Cla017467 vs. Swiss-Prot
Match: RPR1A_BOVIN (Regulation of nuclear pre-mRNA domain-containing protein 1A OS=Bos taurus GN=RPRD1A PE=2 SV=2)

HSP 1 Score: 92.4 bits (228), Expect = 6.8e-18
Identity = 45/110 (40.91%), Postives = 67/110 (60.91%), Query Frame = 1 

Query: 12  LSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVL 71
           LS W I HRK ++ IV  W++    ++  ++++FLYLAND++QNS+RKG EF  +F  V+
Sbjct: 26  LSLWLIHHRKHSRPIVTVWERELRKAKPNRKLTFLYLANDVIQNSKRKGPEFTKDFAPVI 85

Query: 72  PGALKYVYDHGDEGGKKAVARLVNIWEERKVFGSRG-QSLKDEMLGKIPP 121
             A K+V    DE  KK + R+++IWEER V+ +   + LK  + G   P
Sbjct: 86  VEAFKHVSSETDESCKKHLGRVLSIWEERSVYENDVLEQLKQALYGDKKP 135

[Close]
BLAST of Cla017467 vs. Swiss-Prot
Match: RPR1A_HUMAN (Regulation of nuclear pre-mRNA domain-containing protein 1A OS=Homo sapiens GN=RPRD1A PE=1 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 6.8e-18
Identity = 45/110 (40.91%), Postives = 67/110 (60.91%), Query Frame = 1 

Query: 12  LSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVL 71
           LS W I HRK ++ IV  W++    ++  ++++FLYLAND++QNS+RKG EF  +F  V+
Sbjct: 26  LSLWLIHHRKHSRPIVTVWERELRKAKPNRKLTFLYLANDVIQNSKRKGPEFTKDFAPVI 85

Query: 72  PGALKYVYDHGDEGGKKAVARLVNIWEERKVFGSRG-QSLKDEMLGKIPP 121
             A K+V    DE  KK + R+++IWEER V+ +   + LK  + G   P
Sbjct: 86  VEAFKHVSSETDESCKKHLGRVLSIWEERSVYENDVLEQLKQALYGDKKP 135

[Close]
BLAST of Cla017467 vs. Swiss-Prot
Match: RPR1A_PONAB (Regulation of nuclear pre-mRNA domain-containing protein 1A OS=Pongo abelii GN=RPRD1A PE=2 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 6.8e-18
Identity = 45/110 (40.91%), Postives = 67/110 (60.91%), Query Frame = 1 

Query: 12  LSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVL 71
           LS W I HRK ++ IV  W++    ++  ++++FLYLAND++QNS+RKG EF  +F  V+
Sbjct: 26  LSLWLIHHRKHSRPIVTVWERELRKAKPNRKLTFLYLANDVIQNSKRKGPEFTKDFAPVI 85

Query: 72  PGALKYVYDHGDEGGKKAVARLVNIWEERKVFGSRG-QSLKDEMLGKIPP 121
             A K+V    DE  KK + R+++IWEER V+ +   + LK  + G   P
Sbjct: 86  VEAFKHVSSETDESCKKHLGRVLSIWEERSVYENDVLEQLKQALYGDKKP 135

[Close]
BLAST of Cla017467 vs. TrEMBL
Match: V4SRT7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10031118mg PE=4 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 2.1e-82
Identity = 154/190 (81.05%), Postives = 172/190 (90.53%), Query Frame = 1 

Query: 11  ALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 70
           +LSRWCI+HRKKAKQIVETWDK FNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV
Sbjct: 27  SLSRWCITHRKKAKQIVETWDKSFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 86

Query: 71  LPGALKYVYDHGDEGGKKAVARLVNIWEERKVFGSRGQSLKDEMLGKIPPPTQLPSSNGK 130
           LP ALK+VYD+GDE GKKAV RLV+IWEERKVFGSRGQ LKDEMLGK PPP  +P SNG+
Sbjct: 87  LPAALKHVYDNGDEYGKKAVTRLVDIWEERKVFGSRGQGLKDEMLGKNPPP--VPVSNGR 146

Query: 131 SSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQSVLDEHLNEDAALNNCSSATHHLNQIE 190
           SSNPIKIVKRDA+SVRIKLAVG +PEKILTAFQSVLDEH NE+ ALNNC++A HH+ ++ 
Sbjct: 147 SSNPIKIVKRDANSVRIKLAVGALPEKILTAFQSVLDEHPNEEVALNNCNAAVHHVGKVS 206

Query: 191 EDLNASLAQG 201
           ED+  + +QG
Sbjct: 207 EDVENTPSQG 214

[Close]
BLAST of Cla017467 vs. TrEMBL
Match: A0A061F7B0_THECC (ENTH/VHS family protein OS=Theobroma cacao GN=TCM_025762 PE=4 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 2.1e-82
Identity = 156/192 (81.25%), Postives = 175/192 (91.15%), Query Frame = 1 

Query: 11  ALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 70
           +LSRWCI+HRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV
Sbjct: 27  SLSRWCITHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 86

Query: 71  LPGALKYVYDHGDEGGKKAVARLVNIWEERKVFGSRGQSLKDEMLGKIPPPTQLPSS--N 130
           LPGALK+VY++GDE GKKAV RLV+IWEERKVFGSRGQ+LKDEMLGK PPP   P S  N
Sbjct: 87  LPGALKHVYENGDEYGKKAVTRLVDIWEERKVFGSRGQNLKDEMLGKNPPPPPPPLSVNN 146

Query: 131 GKSSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQSVLDEHLNEDAALNNCSSATHHLNQ 190
           GKSSNPIKIVKRDAH+VRIKLAVGG+PEKILTA+QSVL+++ NED ALN C++A   L++
Sbjct: 147 GKSSNPIKIVKRDAHAVRIKLAVGGLPEKILTAYQSVLEDNQNEDIALNKCNAAVQQLHK 206

Query: 191 IEEDLNASLAQG 201
           I ED+ +SLAQG
Sbjct: 207 IGEDVESSLAQG 218

[Close]
BLAST of Cla017467 vs. TrEMBL
Match: M5WEF5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017387mg PE=4 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 8.7e-81
Identity = 151/190 (79.47%), Postives = 169/190 (88.95%), Query Frame = 1 

Query: 11  ALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 70
           +LSRWCISHRKKAKQIVETWDK FNSSQK+QRVSFLYLANDILQNSRRKGSEFVNEFWK 
Sbjct: 28  SLSRWCISHRKKAKQIVETWDKCFNSSQKDQRVSFLYLANDILQNSRRKGSEFVNEFWKF 87

Query: 71  LPGALKYVYDHGDEGGKKAVARLVNIWEERKVFGSRGQSLKDEMLGKIPPPTQLPSSNGK 130
           LP ALK+VY++GD  GKK   RLV+IWEERKVFGSRGQSLKDEM+GK PP   LP SNGK
Sbjct: 88  LPAALKHVYENGDGHGKKVATRLVDIWEERKVFGSRGQSLKDEMMGKNPP--ALPVSNGK 147

Query: 131 SSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQSVLDEHLNEDAALNNCSSATHHLNQIE 190
           SSNPIKIVKRDAHSVRIKLAVGG+PEKILTAFQ VL+EHL+E++ALN CS+A HH+ +I+
Sbjct: 148 SSNPIKIVKRDAHSVRIKLAVGGLPEKILTAFQPVLEEHLSEESALNKCSAAVHHVGKID 207

Query: 191 EDLNASLAQG 201
           ED+  +L  G
Sbjct: 208 EDVENTLTHG 215

[Close]
BLAST of Cla017467 vs. TrEMBL
Match: A0A0B2S634_GLYSO (Regulation of nuclear pre-mRNA domain-containing protein 1B OS=Glycine soja GN=glysoja_021651 PE=4 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 1.4e-78
Identity = 147/198 (74.24%), Postives = 172/198 (86.87%), Query Frame = 1 

Query: 3   LFIFDIKLALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSE 62
           L+      ALS WCISHRK+AK+IVETWDKLFN+SQKEQRVSFLYLANDILQNSRRKGSE
Sbjct: 32  LYFLSNHSALSHWCISHRKRAKEIVETWDKLFNASQKEQRVSFLYLANDILQNSRRKGSE 91

Query: 63  FVNEFWKVLPGALKYVYDHGDEGGKKAVARLVNIWEERKVFGSRGQSLKDEMLGKIPPPT 122
           FVNEFWKVLP AL++VY+ GDE G+KAV RLV+IWEERKVFGSRGQ LKD+++GK P P+
Sbjct: 92  FVNEFWKVLPAALRHVYESGDEDGRKAVTRLVDIWEERKVFGSRGQGLKDDVMGKNPLPS 151

Query: 123 QLPSSNGKSSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQSVLDEHLNEDAALNNCSSA 182
              +SNGKSSN IKIVKRDAHSVRIKLAVGG+PEKILTAFQ +LD+HLNE+A+LNNCS+A
Sbjct: 152 ---ASNGKSSNSIKIVKRDAHSVRIKLAVGGLPEKILTAFQPILDQHLNEEASLNNCSAA 211

Query: 183 THHLNQIEEDLNASLAQG 201
              + ++ ED+  +LAQG
Sbjct: 212 VREVGKVVEDVENTLAQG 226

[Close]
BLAST of Cla017467 vs. TrEMBL
Match: K7KBY0_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_03G004900 PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 4.1e-78
Identity = 145/190 (76.32%), Postives = 170/190 (89.47%), Query Frame = 1 

Query: 11  ALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 70
           +LS WCISHRK+AK+IVETWDKLFN+SQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV
Sbjct: 27  SLSHWCISHRKRAKEIVETWDKLFNASQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 86

Query: 71  LPGALKYVYDHGDEGGKKAVARLVNIWEERKVFGSRGQSLKDEMLGKIPPPTQLPSSNGK 130
           LP AL++VY+ GDE G+KAV RLV+IWEERKVFGSRGQ LKD+++GK P P+   +SNGK
Sbjct: 87  LPAALRHVYESGDEDGRKAVTRLVDIWEERKVFGSRGQGLKDDVMGKNPLPS---ASNGK 146

Query: 131 SSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQSVLDEHLNEDAALNNCSSATHHLNQIE 190
           SSN IKIVKRDAHSVRIKLAVGG+PEKILTAFQ +LD+HLNE+A+LNNCS+A   + ++ 
Sbjct: 147 SSNSIKIVKRDAHSVRIKLAVGGLPEKILTAFQPILDQHLNEEASLNNCSAAVREVGKVV 206

Query: 191 EDLNASLAQG 201
           ED+  +LAQG
Sbjct: 207 EDVENTLAQG 213

[Close]
BLAST of Cla017467 vs. NCBI nr
Match: gi|659084984|ref|XP_008443180.1| (PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 1B-like [Cucumis melo])

HSP 1 Score: 372.9 bits (956), Expect = 4.2e-100
Identity = 184/190 (96.84%), Postives = 186/190 (97.89%), Query Frame = 1 

Query: 11  ALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 70
           +LS+WCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV
Sbjct: 27  SLSKWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 86

Query: 71  LPGALKYVYDHGDEGGKKAVARLVNIWEERKVFGSRGQSLKDEMLGKIPPPTQLPSSNGK 130
           LPGALKYVYDHGDE GKKAVARLVNIWEERKVFGSRGQSLKDEMLGK PPPT LPSSNGK
Sbjct: 87  LPGALKYVYDHGDESGKKAVARLVNIWEERKVFGSRGQSLKDEMLGKNPPPTPLPSSNGK 146

Query: 131 SSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQSVLDEHLNEDAALNNCSSATHHLNQIE 190
           SSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQSVLDEHLNEDAALNNCSSATHHLNQIE
Sbjct: 147 SSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQSVLDEHLNEDAALNNCSSATHHLNQIE 206

Query: 191 EDLNASLAQG 201
           EDLN SLAQG
Sbjct: 207 EDLNVSLAQG 216

[Close]
BLAST of Cla017467 vs. NCBI nr
Match: gi|449437658|ref|XP_004136608.1| (PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 1B-like [Cucumis sativus])

HSP 1 Score: 369.4 bits (947), Expect = 4.6e-99
Identity = 183/190 (96.32%), Postives = 185/190 (97.37%), Query Frame = 1 

Query: 11  ALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 70
           +LS+WCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV
Sbjct: 27  SLSKWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 86

Query: 71  LPGALKYVYDHGDEGGKKAVARLVNIWEERKVFGSRGQSLKDEMLGKIPPPTQLPSSNGK 130
           LPGALKYVYDHGDE GKKAVARLVNIWEERKVFGSRGQSLKDEMLGK PPPT LPSSNGK
Sbjct: 87  LPGALKYVYDHGDESGKKAVARLVNIWEERKVFGSRGQSLKDEMLGKNPPPTPLPSSNGK 146

Query: 131 SSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQSVLDEHLNEDAALNNCSSATHHLNQIE 190
           SSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQSVLDEHLNEDAAL NCSSATHHLNQIE
Sbjct: 147 SSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQSVLDEHLNEDAALINCSSATHHLNQIE 206

Query: 191 EDLNASLAQG 201
           EDLN SLAQG
Sbjct: 207 EDLNVSLAQG 216

[Close]
BLAST of Cla017467 vs. NCBI nr
Match: gi|567889575|ref|XP_006437308.1| (hypothetical protein CICLE_v10031118mg [Citrus clementina])

HSP 1 Score: 313.5 bits (802), Expect = 3.0e-82
Identity = 154/190 (81.05%), Postives = 172/190 (90.53%), Query Frame = 1 

Query: 11  ALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 70
           +LSRWCI+HRKKAKQIVETWDK FNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV
Sbjct: 27  SLSRWCITHRKKAKQIVETWDKSFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 86

Query: 71  LPGALKYVYDHGDEGGKKAVARLVNIWEERKVFGSRGQSLKDEMLGKIPPPTQLPSSNGK 130
           LP ALK+VYD+GDE GKKAV RLV+IWEERKVFGSRGQ LKDEMLGK PPP  +P SNG+
Sbjct: 87  LPAALKHVYDNGDEYGKKAVTRLVDIWEERKVFGSRGQGLKDEMLGKNPPP--VPVSNGR 146

Query: 131 SSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQSVLDEHLNEDAALNNCSSATHHLNQIE 190
           SSNPIKIVKRDA+SVRIKLAVG +PEKILTAFQSVLDEH NE+ ALNNC++A HH+ ++ 
Sbjct: 147 SSNPIKIVKRDANSVRIKLAVGALPEKILTAFQSVLDEHPNEEVALNNCNAAVHHVGKVS 206

Query: 191 EDLNASLAQG 201
           ED+  + +QG
Sbjct: 207 EDVENTPSQG 214

[Close]
BLAST of Cla017467 vs. NCBI nr
Match: gi|590640232|ref|XP_007029897.1| (ENTH/VHS family protein [Theobroma cacao])

HSP 1 Score: 313.5 bits (802), Expect = 3.0e-82
Identity = 156/192 (81.25%), Postives = 175/192 (91.15%), Query Frame = 1 

Query: 11  ALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 70
           +LSRWCI+HRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV
Sbjct: 27  SLSRWCITHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 86

Query: 71  LPGALKYVYDHGDEGGKKAVARLVNIWEERKVFGSRGQSLKDEMLGKIPPPTQLPSS--N 130
           LPGALK+VY++GDE GKKAV RLV+IWEERKVFGSRGQ+LKDEMLGK PPP   P S  N
Sbjct: 87  LPGALKHVYENGDEYGKKAVTRLVDIWEERKVFGSRGQNLKDEMLGKNPPPPPPPLSVNN 146

Query: 131 GKSSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQSVLDEHLNEDAALNNCSSATHHLNQ 190
           GKSSNPIKIVKRDAH+VRIKLAVGG+PEKILTA+QSVL+++ NED ALN C++A   L++
Sbjct: 147 GKSSNPIKIVKRDAHAVRIKLAVGGLPEKILTAYQSVLEDNQNEDIALNKCNAAVQQLHK 206

Query: 191 IEEDLNASLAQG 201
           I ED+ +SLAQG
Sbjct: 207 IGEDVESSLAQG 218

[Close]
BLAST of Cla017467 vs. NCBI nr
Match: gi|645270837|ref|XP_008240637.1| (PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 1B-like [Prunus mume])

HSP 1 Score: 308.9 bits (790), Expect = 7.4e-81
Identity = 152/190 (80.00%), Postives = 169/190 (88.95%), Query Frame = 1 

Query: 11  ALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 70
           +LSRWCISHRKKAKQIVETWDK FNSSQK+QRVSFLYLANDILQNSRRKGSEFVNEFWK 
Sbjct: 28  SLSRWCISHRKKAKQIVETWDKCFNSSQKDQRVSFLYLANDILQNSRRKGSEFVNEFWKF 87

Query: 71  LPGALKYVYDHGDEGGKKAVARLVNIWEERKVFGSRGQSLKDEMLGKIPPPTQLPSSNGK 130
           LP ALK+VY++GD  GKK   RLV+IWEERKVFGSRGQSLKDEM+GK PP   LP SNGK
Sbjct: 88  LPSALKHVYENGDGHGKKVATRLVDIWEERKVFGSRGQSLKDEMMGKNPP--ALPVSNGK 147

Query: 131 SSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQSVLDEHLNEDAALNNCSSATHHLNQIE 190
           SSNPIKIVKRDAHSVRIKLAVGG+PEKILTAFQ VL+EHL+E+AALN CS+A HH+ +I+
Sbjct: 148 SSNPIKIVKRDAHSVRIKLAVGGLPEKILTAFQPVLEEHLSEEAALNKCSAALHHVGKID 207

Query: 191 EDLNASLAQG 201
           ED+  +L  G
Sbjct: 208 EDVENTLTHG 215

The following BLAST results are available for this feature:
BLAST of Cla017467 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RPR1B_HUMAN8.6e-2148.21Regulation of nuclear pre-mRNA domain-containing protein 1B OS=Homo sapiens GN=R... [more]
RPR1B_MOUSE8.6e-2148.21Regulation of nuclear pre-mRNA domain-containing protein 1B OS=Mus musculus GN=R... [more]
RPR1A_BOVIN6.8e-1840.91Regulation of nuclear pre-mRNA domain-containing protein 1A OS=Bos taurus GN=RPR... [more]
RPR1A_HUMAN6.8e-1840.91Regulation of nuclear pre-mRNA domain-containing protein 1A OS=Homo sapiens GN=R... [more]
RPR1A_PONAB6.8e-1840.91Regulation of nuclear pre-mRNA domain-containing protein 1A OS=Pongo abelii GN=R... [more]
BLAST of Cla017467 vs. TrEMBL
Match NameE-valueIdentityDescription
V4SRT7_9ROSI2.1e-8281.05Uncharacterized protein OS=Citrus clementina GN=CICLE_v10031118mg PE=4 SV=1[more]
A0A061F7B0_THECC2.1e-8281.25ENTH/VHS family protein OS=Theobroma cacao GN=TCM_025762 PE=4 SV=1[more]
M5WEF5_PRUPE8.7e-8179.47Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017387mg PE=4 SV=1[more]
A0A0B2S634_GLYSO1.4e-7874.24Regulation of nuclear pre-mRNA domain-containing protein 1B OS=Glycine soja GN=g... [more]
K7KBY0_SOYBN4.1e-7876.32Uncharacterized protein OS=Glycine max GN=GLYMA_03G004900 PE=4 SV=1[more]
BLAST of Cla017467 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659084984|ref|XP_008443180.1|4.2e-10096.84PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 1B-like [Cuc... [more]
gi|449437658|ref|XP_004136608.1|4.6e-9996.32PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 1B-like [Cuc... [more]
gi|567889575|ref|XP_006437308.1|3.0e-8281.05hypothetical protein CICLE_v10031118mg [Citrus clementina][more]
gi|590640232|ref|XP_007029897.1|3.0e-8281.25ENTH/VHS family protein [Theobroma cacao][more]
gi|645270837|ref|XP_008240637.1|7.4e-8180.00PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 1B-like [Pru... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006569CID_dom
IPR006903RNA_pol_II-bd
IPR008942ENTH_VHS
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0031124 mRNA 3'-end processing
cellular_component GO:0005575 cellular_component
cellular_component GO:0016591 DNA-directed RNA polymerase II, holoenzyme
molecular_function GO:0003674 molecular_function
molecular_function GO:0000993 RNA polymerase II core binding
molecular_function GO:0016740 transferase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla017467Cla017467.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006569CID domainSMARTSM00582558neu5coord: 3..115
score: 2.0
IPR006569CID domainPROFILEPS51391CIDcoord: 1..119
score: 35
IPR006903RNA polymerase II-binding domainPFAMPF04818CTD_bindcoord: 42..103
score: 2.0
IPR008942ENTH/VHSGENE3DG3DSA:1.25.40.90coord: 12..120
score: 1.3
IPR008942ENTH/VHSunknownSSF48464ENTH/VHS domaincoord: 10..120
score: 7.32
NoneNo IPR availablePANTHERPTHR12460CYCLIN-DEPENDENT KINASE INHIBITOR-RELATED PROTEINcoord: 12..194
score: 6.2
NoneNo IPR availablePANTHERPTHR12460:SF4ENTH/VHS FAMILY PROTEINcoord: 12..194
score: 6.2