Csa3G644780 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G644780
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr3 : 25248383 .. 25248745 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGGAAGCTATGAGGATCATCAGGAAGAACTACGGCGCTGTGGAATTCAGTTTCGGAGGCGACGAAGAATGGCAGTGGCACGACTTGGGGGGAAGAGATCGGGACGGATCGTGGGGTGGGGGAGGATAGTGAGGAAGATACGACTGAAATGGGTGAAGATGAAATGCATAGAGATGGTGAAGAAGATGAAAAAATACTACAAAGAGTTGATGAAGGATATAATGGAAGCAGGAGCTTATGGATATGCTGACTCATATCAACATAGGCTTCTTTTGGAGACTTCTTTTGCTATTCCAATTCTGGGTGTTTCTCTTTCTACTCATTCTAGTATTCATGCTGCTACAGCTGCTACTTCATAA

mRNA sequence

ATGGCTGGAAGCTATGAGGATCATCAGGAAGAACTACGGCGCTGTGGAATTCAGTTTCGGAGGCGACGAAGAATGGCAGTGGCACGACTTGGGGGGAAGAGATCGGGACGGATCGTGGGGTGGGGGAGGATAGTGAGGAAGATACGACTGAAATGGGTGAAGATGAAATGCATAGAGATGGTGAAGAAGATGAAAAAATACTACAAAGAGTTGATGAAGGATATAATGGAAGCAGGAGCTTATGGATATGCTGACTCATATCAACATAGGCTTCTTTTGGAGACTTCTTTTGCTATTCCAATTCTGGGTGTTTCTCTTTCTACTCATTCTAGTATTCATGCTGCTACAGCTGCTACTTCATAA

Coding sequence (CDS)

ATGGCTGGAAGCTATGAGGATCATCAGGAAGAACTACGGCGCTGTGGAATTCAGTTTCGGAGGCGACGAAGAATGGCAGTGGCACGACTTGGGGGGAAGAGATCGGGACGGATCGTGGGGTGGGGGAGGATAGTGAGGAAGATACGACTGAAATGGGTGAAGATGAAATGCATAGAGATGGTGAAGAAGATGAAAAAATACTACAAAGAGTTGATGAAGGATATAATGGAAGCAGGAGCTTATGGATATGCTGACTCATATCAACATAGGCTTCTTTTGGAGACTTCTTTTGCTATTCCAATTCTGGGTGTTTCTCTTTCTACTCATTCTAGTATTCATGCTGCTACAGCTGCTACTTCATAA

Protein sequence

MAGSYEDHQEELRRCGIQFRRRRRMAVARLGGKRSGRIVGWGRIVRKIRLKWVKMKCIEMVKKMKKYYKELMKDIMEAGAYGYADSYQHRLLLETSFAIPILGVSLSTHSSIHAATAATS*

Homology

[Close]

BLAST of Csa3G644780 vs. TrEMBL
Match: A0A0A0LBW7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G644780 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 3.1e-61
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1


Query: 1   MAGSYEDHQEELRRCGIQFRRRRRMAVARLGGKRSGRIVGWGRIVRKIRLKWVKMKCIEM 60
           MAGSYEDHQEELRRCGIQFRRRRRMAVARLGGKRSGRIVGWGRIVRKIRLKWVKMKCIEM
Sbjct: 1   MAGSYEDHQEELRRCGIQFRRRRRMAVARLGGKRSGRIVGWGRIVRKIRLKWVKMKCIEM 60

Query: 61  VKKMKKYYKELMKDIMEAGAYGYADSYQHRLLLETSFAIPILGVSLSTHSSIHAATAATS 120
           VKKMKKYYKELMKDIMEAGAYGYADSYQHRLLLETSFAIPILGVSLSTHSSIHAATAATS
Sbjct: 61  VKKMKKYYKELMKDIMEAGAYGYADSYQHRLLLETSFAIPILGVSLSTHSSIHAATAATS 120

[Close]

BLAST of Csa3G644780 vs. TrEMBL
Match: M5X878_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026283mg PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 4.4e-15
Identity = 48/114 (42.11%), Postives = 81/114 (71.05%), Query Frame = 1


Query: 1   MAGSYEDHQEE--LRRCGIQFRRRRRMAVARLGGKRSGRIVGWGRIVRKIRLKWVKMKCI 60
           MA  ++ H++   L R G   RR R++ VARLGG +  R + + +++++IR++W+K++ +
Sbjct: 1   MAQDHDLHRQNQPLVRRGFPLRRSRKLPVARLGGPKPKRGLVFVKMLKRIRMRWLKLQYL 60

Query: 61  EMVKKMKKYYKELMKDIMEAGAYGYADSYQHRLLLETSFAIPILGVSLSTHSSI 113
            M+KK+K+ YK +MKD+M AGA    +++  R+ +ETSFAIP LGVSLS++ S+
Sbjct: 61  CMLKKLKESYKNMMKDLMVAGA--SLETFHQRIFMETSFAIP-LGVSLSSYPSV 111

[Close]

BLAST of Csa3G644780 vs. TrEMBL
Match: A0A067L0E6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24687 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.7e-14
Identity = 42/92 (45.65%), Postives = 68/92 (73.91%), Query Frame = 1


Query: 21  RRRRMAVARLGGKRSGRIVGWGRIVRKIRLKWVKMKCIEMVKKMKKYYKELMKDIMEAGA 80
           RRR+M   RLGGK+  R +   R+++K+RL+W+K++   M++K+K+YY  L+KDI+EAGA
Sbjct: 33  RRRKMHTVRLGGKKPRRGLFLLRMLKKMRLRWLKLQYSCMLRKLKEYYSNLIKDIVEAGA 92

Query: 81  YGYADSYQHRLLLETSFAIPILGVSLSTHSSI 113
               +SYQ RL++E S A+P++G+S S + S+
Sbjct: 93  --TIESYQQRLVMEASLAVPVMGISFSGYPSM 122

[Close]

BLAST of Csa3G644780 vs. TrEMBL
Match: A0A061GDP5_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_029154 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.2e-14
Identity = 42/91 (46.15%), Postives = 67/91 (73.63%), Query Frame = 1


Query: 21  RRRRMAVARLGGKRSGRIVGWGRIVRKIRLKWVKMKCIEMVKKMKKYYKELMKDIMEAGA 80
           RR +M   RLGGK+  R +   RI++KIRL+W+K++   M++K++KYY+ L+KDI+EAGA
Sbjct: 33  RRNKMPTVRLGGKKPRRGLFIVRILKKIRLRWLKLQYTCMLRKLRKYYRNLIKDIVEAGA 92

Query: 81  YGYADSYQHRLLLETSFAIPILGVSLSTHSS 112
               ++ Q R+ +E++FA+P+LGVS S+  S
Sbjct: 93  --SVEALQQRMFMESTFAVPVLGVSFSSFPS 121

[Close]

BLAST of Csa3G644780 vs. TrEMBL
Match: F6HXV6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g01060 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.2e-14
Identity = 44/104 (42.31%), Postives = 70/104 (67.31%), Query Frame = 1


Query: 19  FRRRRRMAVARLGG----KRSGRIVGWGRIVRKIRLKWVKMKCIEMVKKMKKYYKELMKD 78
           F RR+R+ V RLGG     +  R     R++R+I+L+W+K++    +KK+K+YY+ ++KD
Sbjct: 27  FPRRKRLPVIRLGGGPAAAKQRRGPSLVRLMRRIKLRWLKLRYFFTLKKLKQYYRSMVKD 86

Query: 79  IMEAGAYGYADSYQHRLLLETSFAIPILGVSLSTHSSIHAATAA 119
            +EAGA    +++Q R+L+ETSFA+P+LGVS ST+ S      A
Sbjct: 87  FVEAGA--TLETFQQRILMETSFAVPVLGVSFSTYPSAAGGAGA 128

[Close]

BLAST of Csa3G644780 vs. TAIR10
Match: AT1G54120.1 (AT1G54120.1 unknown protein)

HSP 1 Score: 67.0 bits (162), Expect = 9.0e-12
Identity = 37/94 (39.36%), Postives = 61/94 (64.89%), Query Frame = 1


Query: 21  RRRRMAVARLGGKRSGRIVGW---GRIVRKIRLKWVKMKCIEMVKKMKKYYKELMKDIME 80
           RRR+  V RLGGK S    G     ++VR+++L+W+K+  + +VKK+K +Y+ L+K+ ++
Sbjct: 23  RRRKSQVVRLGGKNSAVSRGGFSLKKMVRRMKLRWLKLHYVRVVKKIKVFYRNLVKEFVD 82

Query: 81  AGAYGYADSYQHRLLLE-TSFAIPILGVSLSTHS 111
           AGA    ++ Q R+ +E  +FA+P LG+S S+ S
Sbjct: 83  AGA--ELEAIQQRMAVEAAAFAVPGLGLSFSSFS 114

[Close]

BLAST of Csa3G644780 vs. TAIR10
Match: AT3G14060.1 (AT3G14060.1 unknown protein)

HSP 1 Score: 62.8 bits (151), Expect = 1.7e-10
Identity = 36/90 (40.00%), Postives = 56/90 (62.22%), Query Frame = 1


Query: 19  FRRRRRMAVARLGGKRSGRIVGWG--RIVRKIRLKWVKMKCIEMVKKMKKYYKELMKDIM 78
           + RRR+  V RLGGK S     +   ++V ++RLKW+++  + +VKK+K YY+ ++K+  
Sbjct: 24  YLRRRKPQVVRLGGKNSTPRGSFSLKKVVTRMRLKWLRLYYVRLVKKIKAYYRTIVKEFE 83

Query: 79  EAGAYGYADSYQHRLLLET-SFAIPILGVS 106
           EAG    A + Q R+ +ET +FA P LG+S
Sbjct: 84  EAG----AATIQQRMTVETAAFAAPGLGLS 109

[Close]

BLAST of Csa3G644780 vs. NCBI nr
Match: gi|778688729|ref|XP_011652825.1| (PREDICTED: uncharacterized protein LOC105435118 [Cucumis sativus])

HSP 1 Score: 242.3 bits (617), Expect = 4.5e-61
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1


Query: 1   MAGSYEDHQEELRRCGIQFRRRRRMAVARLGGKRSGRIVGWGRIVRKIRLKWVKMKCIEM 60
           MAGSYEDHQEELRRCGIQFRRRRRMAVARLGGKRSGRIVGWGRIVRKIRLKWVKMKCIEM
Sbjct: 1   MAGSYEDHQEELRRCGIQFRRRRRMAVARLGGKRSGRIVGWGRIVRKIRLKWVKMKCIEM 60

Query: 61  VKKMKKYYKELMKDIMEAGAYGYADSYQHRLLLETSFAIPILGVSLSTHSSIHAATAATS 120
           VKKMKKYYKELMKDIMEAGAYGYADSYQHRLLLETSFAIPILGVSLSTHSSIHAATAATS
Sbjct: 61  VKKMKKYYKELMKDIMEAGAYGYADSYQHRLLLETSFAIPILGVSLSTHSSIHAATAATS 120

[Close]

BLAST of Csa3G644780 vs. NCBI nr
Match: gi|659120692|ref|XP_008460309.1| (PREDICTED: uncharacterized protein LOC103499168 [Cucumis melo])

HSP 1 Score: 217.6 bits (553), Expect = 1.2e-53
Identity = 111/121 (91.74%), Postives = 115/121 (95.04%), Query Frame = 1


Query: 1   MAGSYEDHQEELRRCGIQFRRRRRMAVARLGGKRSGRIVGWGRIVRKIRLKWVKMKCIEM 60
           MA SY DHQEELRR GIQFRRRR+MAVARLGGKRSGRI+ WGRIVRKIRLKWVKMKCIEM
Sbjct: 1   MAESYGDHQEELRRHGIQFRRRRKMAVARLGGKRSGRIMAWGRIVRKIRLKWVKMKCIEM 60

Query: 61  VKKMKKYYKELMKDIMEAGAYGYADSYQHRLLLETSFAIPILGVSLSTHSS-IHAATAAT 120
           VKKMKKYYK+LMKDIMEAGAYGYADSYQHRLLLETSFAIPILGVSLSTHSS IHAA AA+
Sbjct: 61  VKKMKKYYKKLMKDIMEAGAYGYADSYQHRLLLETSFAIPILGVSLSTHSSIIHAAAAAS 120

[Close]

BLAST of Csa3G644780 vs. NCBI nr
Match: gi|1009176590|ref|XP_015869513.1| (PREDICTED: uncharacterized protein LOC107406823 [Ziziphus jujuba])

HSP 1 Score: 94.0 bits (232), Expect = 2.0e-16
Identity = 41/95 (43.16%), Postives = 74/95 (77.89%), Query Frame = 1


Query: 21  RRRRMAVARLGGKRSGRIVGWGRIVRKIRLKWVKMKCIEMVKKMKKYYKELMKDIMEAGA 80
           RRRR+   RLGGKR GR+VG   I+R+I+++W+K++ + M++K+++YY++ +K++ EA A
Sbjct: 29  RRRRVPAIRLGGKRPGRVVGLIGILRRIKVRWLKLRYLYMLRKLREYYRKTVKELKEASA 88

Query: 81  YGYADSYQHRLLLETSFAIPILGVSLSTHSSIHAA 116
               +++Q R+LLETSFA+P++GVS + + ++ A+
Sbjct: 89  --TIEAFQQRVLLETSFAVPVMGVSFNNYPAVAAS 121

[Close]

BLAST of Csa3G644780 vs. NCBI nr
Match: gi|764609782|ref|XP_011467443.1| (PREDICTED: uncharacterized protein LOC105352328 [Fragaria vesca subsp. vesca])

HSP 1 Score: 93.6 bits (231), Expect = 2.6e-16
Identity = 51/101 (50.50%), Postives = 76/101 (75.25%), Query Frame = 1


Query: 12  LRRCGIQFRRRRRMAVARLGGKRSGRIVGWGRIVRKIRLKWVKMKCIEMVKKMKKYYKEL 71
           + R GI  RRR+ + +ARLGGK+  R V   R+ RKIRL+W+K+K + M+KK+K+ YK +
Sbjct: 21  MSRYGIPLRRRK-LPMARLGGKKPPRAVMLVRMFRKIRLRWLKLKYLCMLKKLKESYKNM 80

Query: 72  MKDIMEAGAYGYADSYQHRLLLETSFAIPILGVSLSTHSSI 113
           +KD+MEAGA    +++Q R+ +ET+FAIP +GVSLS++ SI
Sbjct: 81  VKDLMEAGA--SIETFQQRIFMETTFAIP-MGVSLSSYPSI 117

[Close]

BLAST of Csa3G644780 vs. NCBI nr
Match: gi|595953574|ref|XP_007216524.1| (hypothetical protein PRUPE_ppa026283mg [Prunus persica])

HSP 1 Score: 89.0 bits (219), Expect = 6.3e-15
Identity = 48/114 (42.11%), Postives = 81/114 (71.05%), Query Frame = 1


Query: 1   MAGSYEDHQEE--LRRCGIQFRRRRRMAVARLGGKRSGRIVGWGRIVRKIRLKWVKMKCI 60
           MA  ++ H++   L R G   RR R++ VARLGG +  R + + +++++IR++W+K++ +
Sbjct: 1   MAQDHDLHRQNQPLVRRGFPLRRSRKLPVARLGGPKPKRGLVFVKMLKRIRMRWLKLQYL 60

Query: 61  EMVKKMKKYYKELMKDIMEAGAYGYADSYQHRLLLETSFAIPILGVSLSTHSSI 113
            M+KK+K+ YK +MKD+M AGA    +++  R+ +ETSFAIP LGVSLS++ S+
Sbjct: 61  CMLKKLKESYKNMMKDLMVAGA--SLETFHQRIFMETSFAIP-LGVSLSSYPSV 111

The following BLAST results are available for this feature:

BLAST of Csa3G644780 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBW7_CUCSA	3.1e-61	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G644780 PE=4 SV=1	[more]
M5X878_PRUPE	4.4e-15	42.11	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026283mg PE=4 SV=1	[more]
A0A067L0E6_JATCU	1.7e-14	45.65	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24687 PE=4 SV=1	[more]
A0A061GDP5_THECC	2.2e-14	46.15	Uncharacterized protein OS=Theobroma cacao GN=TCM_029154 PE=4 SV=1	[more]
F6HXV6_VITVI	2.2e-14	42.31	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g01060 PE=4 SV=...	[more]

BLAST of Csa3G644780 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G54120.1	9.0e-12	39.36	unknown protein	[more]
AT3G14060.1	1.7e-10	40.00	unknown protein	[more]

BLAST of Csa3G644780 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778688729\|ref\|XP_011652825.1\|	4.5e-61	100.00	PREDICTED: uncharacterized protein LOC105435118 [Cucumis sativus]	[more]
gi\|659120692\|ref\|XP_008460309.1\|	1.2e-53	91.74	PREDICTED: uncharacterized protein LOC103499168 [Cucumis melo]	[more]
gi\|1009176590\|ref\|XP_015869513.1\|	2.0e-16	43.16	PREDICTED: uncharacterized protein LOC107406823 [Ziziphus jujuba]	[more]
gi\|764609782\|ref\|XP_011467443.1\|	2.6e-16	50.50	PREDICTED: uncharacterized protein LOC105352328 [Fragaria vesca subsp. vesca]	[more]
gi\|595953574\|ref\|XP_007216524.1\|	6.3e-15	42.11	hypothetical protein PRUPE_ppa026283mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G644780.1	Csa3G644780.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34788	FAMILY NOT NAMED	coord: 21..112 score: 6.8
None	No IPR available	PANTHER	PTHR34788:SF1	F15I1.22	coord: 21..112 score: 6.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa3G644780	Cla012529	Watermelon (97103) v1	cuwmB218
Csa3G644780	MELO3C022667	Melon (DHL92) v3.5.1	cumeB209
Csa3G644780	ClCG07G014560	Watermelon (Charleston Gray)	cuwcgB253
Csa3G644780	Lsi07G006670	Bottle gourd (USVL1VR-Ls)	culsiB233
Csa3G644780	MELO3C022667.2	Melon (DHL92) v3.6.1	cumedB195
Csa3G644780	Cla97C07G141420	Watermelon (97103) v2	cuwmbB239
Csa3G644780	Bhi01G002259	Wax gourd	cuwgoB276
Csa3G644780	CSPI03G28310	Wild cucumber (PI 183967)	cpicuB120
Csa3G644780	Cucsa.149530	Cucumber (Gy14) v1	cgycuB216
Csa3G644780	CmaCh01G000090	Cucurbita maxima (Rimu)	cmacuB447
Csa3G644780	CmoCh14G012190	Cucurbita moschata (Rifu)	cmocuB230
Csa3G644780	CmoCh01G000080	Cucurbita moschata (Rifu)	cmocuB434
Csa3G644780	Cp4.1LG02g17430	Cucurbita pepo (Zucchini)	cpecuB559
Csa3G644780	Carg27132	Silver-seed gourd	carcuB0497

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G644780	Cucumber (Gy14) v2	cgybcuB111
Csa3G644780	Silver-seed gourd	carcuB0223
Csa3G644780	Cucurbita maxima (Rimu)	cmacuB243
Csa3G644780	Cucurbita pepo (Zucchini)	cpecuB601