Csa3G640600 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G640600
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 25061193 .. 25061660 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAAGGTTGATGTAAAGGTAAATTATGCAATTTAGGAGAAATTACATCCATATTTATAGGCTTTCCTTATATTTTTGTATAATCCTGTGTATTTAACCATTTCTTTTTCTTATGTAAATCACATCCGTAATATCAATAAAACATTCAAGTCCACATGACATCAGAGGTAGAAATTTGACCTAGCCGTCGCCCCCTCAATCTTCACGAACTCTGACCAGACGACCCGTACCCGACTCGTTCCGTTTGAAGACTCCCAGTTCGTGTTACTCAGATCCGCCGATCCGTTCGATGACGCTCAGTTCCCCTCAGATTCAACGACGCTCAGATCCGACGCCCAGTTCCGCGCTGCTCCGGTCCCCTCCAGTTCAGTCAGCCACTCCACTCCAACTCAGATCTTTGCTTTGTTCTGCCCTACTTCGTCAAGACGAGGCTCGGAACGATCATATTTTTTGTCGTATTCGTAG

mRNA sequence

ATGGTGAAGGTTGATGTAAAGACGACCCGTACCCGACTCGTTCCGTTTGAAGACTCCCAGTTCGTGTTACTCAGATCCGCCGATCCGTTCGATGACGCTCAGTTCCCCTCAGATTCAACGACGCTCAGATCCGACGCCCAGTTCCGCGCTGCTCCGGTCCCCTCCAGTTCAGTCAGCCACTCCACTCCAACTCAGATCTTTGCTTTGTTCTGCCCTACTTCGTCAAGACGAGGCTCGGAACGATCATATTTTTTGTCGTATTCGTAG

Coding sequence (CDS)

ATGGTGAAGGTTGATGTAAAGACGACCCGTACCCGACTCGTTCCGTTTGAAGACTCCCAGTTCGTGTTACTCAGATCCGCCGATCCGTTCGATGACGCTCAGTTCCCCTCAGATTCAACGACGCTCAGATCCGACGCCCAGTTCCGCGCTGCTCCGGTCCCCTCCAGTTCAGTCAGCCACTCCACTCCAACTCAGATCTTTGCTTTGTTCTGCCCTACTTCGTCAAGACGAGGCTCGGAACGATCATATTTTTTGTCGTATTCGTAG

Protein sequence

MVKVDVKTTRTRLVPFEDSQFVLLRSADPFDDAQFPSDSTTLRSDAQFRAAPVPSSSVSHSTPTQIFALFCPTSSRRGSERSYFLSYS*
Homology
[Close]
BLAST of Csa3G640600 vs. TrEMBL
Match: A0A0A0L997_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G640600 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 2.0e-41
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1 

Query: 1  MVKVDVKTTRTRLVPFEDSQFVLLRSADPFDDAQFPSDSTTLRSDAQFRAAPVPSSSVSH 60
          MVKVDVKTTRTRLVPFEDSQFVLLRSADPFDDAQFPSDSTTLRSDAQFRAAPVPSSSVSH
Sbjct: 1  MVKVDVKTTRTRLVPFEDSQFVLLRSADPFDDAQFPSDSTTLRSDAQFRAAPVPSSSVSH 60

Query: 61 STPTQIFALFCPTSSRRGSERSYFLSYS 89
          STPTQIFALFCPTSSRRGSERSYFLSYS
Sbjct: 61 STPTQIFALFCPTSSRRGSERSYFLSYS 88

[Close]
BLAST of Csa3G640600 vs. NCBI nr
Match: gi|700203285|gb|KGN58418.1| (hypothetical protein Csa_3G640600 [Cucumis sativus])

HSP 1 Score: 176.0 bits (445), Expect = 2.9e-41
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1 

Query: 1  MVKVDVKTTRTRLVPFEDSQFVLLRSADPFDDAQFPSDSTTLRSDAQFRAAPVPSSSVSH 60
          MVKVDVKTTRTRLVPFEDSQFVLLRSADPFDDAQFPSDSTTLRSDAQFRAAPVPSSSVSH
Sbjct: 1  MVKVDVKTTRTRLVPFEDSQFVLLRSADPFDDAQFPSDSTTLRSDAQFRAAPVPSSSVSH 60

Query: 61 STPTQIFALFCPTSSRRGSERSYFLSYS 89
          STPTQIFALFCPTSSRRGSERSYFLSYS
Sbjct: 61 STPTQIFALFCPTSSRRGSERSYFLSYS 88

The following BLAST results are available for this feature:
BLAST of Csa3G640600 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L997_CUCSA2.0e-41100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G640600 PE=4 SV=1[more]
BLAST of Csa3G640600 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700203285|gb|KGN58418.1|2.9e-41100.00hypothetical protein Csa_3G640600 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU097578cucumber EST collection version 3.0transcribed_cluster
CU103612cucumber EST collection version 3.0transcribed_cluster
CU121080cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G640600.1Csa3G640600.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU103612CU103612transcribed_cluster
CU121080CU121080transcribed_cluster
CU097578CU097578transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa3G640600CsGy3G026140Cucumber (Gy14) v2cgybcuB111
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G640600Bottle gourd (USVL1VR-Ls)culsiB233
Csa3G640600Melon (DHL92) v3.6.1cumedB194
Csa3G640600Watermelon (97103) v2cuwmbB239
Csa3G640600Wax gourdcuwgoB276
Csa3G640600Cucumber (Gy14) v1cgycuB216
Csa3G640600Cucurbita maxima (Rimu)cmacuB243
Csa3G640600Cucurbita moschata (Rifu)cmocuB230
Csa3G640600Melon (DHL92) v3.5.1cumeB168
Csa3G640600Watermelon (Charleston Gray)cuwcgB253
Csa3G640600Cucurbita pepo (Zucchini)cpecuB601