Csa3G466700 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G466700
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 20900031 .. 20900565 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGCCGCCCACCCTTCAACCTCACGCCAACTTCTTCTCCTCCTCCATCAGTTTCGATTTATCGCGCCGCCGAAGTCTTGCGTTGTTCGGGTTGCACAAGCCGATCACCGGCCGTCAAGCTTGCAAGCGCTGCGTGACTCTCCATCGATCAATCATCCCGAACCGTAGCCGTTCTGCTAAGGCCGTCGTCGCGCACATCTCTGTGTAGCCGACGACTACCCGAACCACGTTCGCCGCGCGTCGGGAGACCACTCCAAGCCGTGCAGCCTCCATCTTTTCGTCTGACCGAGCCGTCCAACTTCTCCCATCACTCAGTTACGTTTTGCACATTGTTGCCCAACTCGGTTCGTAGACCTTTGCCCTTTTACTCTACGACTTGCAGTGATTTTTCGGTTGTAATTAATTGTCGTGGGTTATGGATCTGTGATGTCTCTTTGGGAATGCAATGTTGAATTAATCGATTGGTTTATATGGGTTTTTTGGAGGTGTCGTTGTGGATAGTGTTAGAGTTCTTGGAGTTTTGACGGGTTGG

mRNA sequence

ATGGCCGCCGCCCACCCTTCAACCTCACGCCAACTTCTTCTCCTCCTCCATCAGTTTCGATTTATCGCGCCGCCGAAGTCTTGCGTTGTTCGGGTTGCACAAGCCGATCACCGGCCGTCAAGCTTGCAAGCGCTGCGTGACTCTCCATCGATCAATCATCCCGAACCCCGACGACTACCCGAACCACGTTCGCCGCGCGTCGGGAGACCACTCCAAGCCGTGCAGCCTCCATCTTTTCGTCTGACCGAGCCGTCCAACTTCTCCCATCACTCAGTTACGTTTTGCACATTGTTGCCCAACTCGGTTCGTAGACCTTTGCCCTTTTACTCTACGACTTGCAGTGATTTTTCGGTTGTAATTAATTGTCGTGGGTTATGGATCTGTGATGTCTCTTTGGGAATGCAATGTTGA

Coding sequence (CDS)

ATGGCCGCCGCCCACCCTTCAACCTCACGCCAACTTCTTCTCCTCCTCCATCAGTTTCGATTTATCGCGCCGCCGAAGTCTTGCGTTGTTCGGGTTGCACAAGCCGATCACCGGCCGTCAAGCTTGCAAGCGCTGCGTGACTCTCCATCGATCAATCATCCCGAACCCCGACGACTACCCGAACCACGTTCGCCGCGCGTCGGGAGACCACTCCAAGCCGTGCAGCCTCCATCTTTTCGTCTGACCGAGCCGTCCAACTTCTCCCATCACTCAGTTACGTTTTGCACATTGTTGCCCAACTCGGTTCGTAGACCTTTGCCCTTTTACTCTACGACTTGCAGTGATTTTTCGGTTGTAATTAATTGTCGTGGGTTATGGATCTGTGATGTCTCTTTGGGAATGCAATGTTGA

Protein sequence

MAAAHPSTSRQLLLLLHQFRFIAPPKSCVVRVAQADHRPSSLQALRDSPSINHPEPRRLPEPRSPRVGRPLQAVQPPSFRLTEPSNFSHHSVTFCTLLPNSVRRPLPFYSTTCSDFSVVINCRGLWICDVSLGMQC*
Homology
[Close]
BLAST of Csa3G466700 vs. TrEMBL
Match: A0A0A0L8E5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G466700 PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 4.7e-74
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1 

Query: 1   MAAAHPSTSRQLLLLLHQFRFIAPPKSCVVRVAQADHRPSSLQALRDSPSINHPEPRRLP 60
           MAAAHPSTSRQLLLLLHQFRFIAPPKSCVVRVAQADHRPSSLQALRDSPSINHPEPRRLP
Sbjct: 1   MAAAHPSTSRQLLLLLHQFRFIAPPKSCVVRVAQADHRPSSLQALRDSPSINHPEPRRLP 60

Query: 61  EPRSPRVGRPLQAVQPPSFRLTEPSNFSHHSVTFCTLLPNSVRRPLPFYSTTCSDFSVVI 120
           EPRSPRVGRPLQAVQPPSFRLTEPSNFSHHSVTFCTLLPNSVRRPLPFYSTTCSDFSVVI
Sbjct: 61  EPRSPRVGRPLQAVQPPSFRLTEPSNFSHHSVTFCTLLPNSVRRPLPFYSTTCSDFSVVI 120

Query: 121 NCRGLWICDVSLGMQC 137
           NCRGLWICDVSLGMQC
Sbjct: 121 NCRGLWICDVSLGMQC 136

[Close]
BLAST of Csa3G466700 vs. NCBI nr
Match: gi|700202920|gb|KGN58053.1| (hypothetical protein Csa_3G466700 [Cucumis sativus])

HSP 1 Score: 285.0 bits (728), Expect = 6.8e-74
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1 

Query: 1   MAAAHPSTSRQLLLLLHQFRFIAPPKSCVVRVAQADHRPSSLQALRDSPSINHPEPRRLP 60
           MAAAHPSTSRQLLLLLHQFRFIAPPKSCVVRVAQADHRPSSLQALRDSPSINHPEPRRLP
Sbjct: 1   MAAAHPSTSRQLLLLLHQFRFIAPPKSCVVRVAQADHRPSSLQALRDSPSINHPEPRRLP 60

Query: 61  EPRSPRVGRPLQAVQPPSFRLTEPSNFSHHSVTFCTLLPNSVRRPLPFYSTTCSDFSVVI 120
           EPRSPRVGRPLQAVQPPSFRLTEPSNFSHHSVTFCTLLPNSVRRPLPFYSTTCSDFSVVI
Sbjct: 61  EPRSPRVGRPLQAVQPPSFRLTEPSNFSHHSVTFCTLLPNSVRRPLPFYSTTCSDFSVVI 120

Query: 121 NCRGLWICDVSLGMQC 137
           NCRGLWICDVSLGMQC
Sbjct: 121 NCRGLWICDVSLGMQC 136

The following BLAST results are available for this feature:
BLAST of Csa3G466700 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L8E5_CUCSA4.7e-74100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G466700 PE=4 SV=1[more]
BLAST of Csa3G466700 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202920|gb|KGN58053.1|6.8e-74100.00hypothetical protein Csa_3G466700 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU103295cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G466700.1Csa3G466700.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU103295CU103295transcribed_cluster