Csa3G355040 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G355040
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Kinetochore protein
Location	Chr3 : 18279547 .. 18281499 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGAGGATGTTCAACAAGAAGCTCATAACTTAGATCTCGTGGAAGGAGAAGCAGAGGAGAGTTTGAAGGTATTAATGCTTTACCACAATTATTCCCTTTATTTATTATTGTTATTATTATTATTATTTTTGGGTGGGGGGAGTTGACCCCTTTTTTCCCTTTCTTTTGGTAACCCTGATGATCAGTTGGCTTTGCAGAGGACTATTATTTCTGTGGGTAAATAACACTGTTAGCCCTTGAATTTCAAAATTAGTTTCTATTTGATCCCTTACTGATATTTTTAGTCCTATGCCTTTAAGAAATGGTACTTAACTTAGTTGACTATTTGATTGATGATTTGGCAGGTAATATAATTTTTCAAATGAGTTGGAATTGTTTTAGCTTATGTGACATTTCTCTTTATTTCCCTACCCTTCTGACATTTGCTTCTTCTCCTTTTATCTGAGTGCAAAAAATTCATTCACCTTCTTTCATTAAGAAGTACACTTTGTCTTTGCCCATACCTCTCACTCTTTCTTCTCCCAAAGCTTTCAACCAACAACACTTCATATAAGAAAATAAGTTATAAAACTCCAAACATTACACGCCTAAGATTTGTGCGAGTGAGGAAAGGATACATGCACACGAGTGTGACTTTTAAGAGTTGAAGAATCCATGTGCGAGAGAGACATACAAAGTTGAGATAAATTTAAGAGTTGAGTGTGATGGCGATAAATGAGGAAGTCAAGTGTGACTTTTTGTATTCTGTCAATGCAAGTTGTGAATGAGAGAAGGATTTTGAGTTTAGGTTTTAAGAAGAGGATTGAGGAATAACTATTACTCATATGGAATGTTATCTGCCAATTCTTTTGAGCTCGCCACTGCTGCCCCTTTTGTACCGATGAGATACATTCACCTTTGATTGGCTCCATGGTCTCGTACTTATCCTTCCATATAAGATGTTATCCCCTTTGAAATCAATCCAATGCTAGCATAATAAGAAGGGTAGGGAAAGAAAAGAGAAAATCATGTCTACAAATCTAGTCAGCAAGTTAACTGTCGAATCATTATTTAGATAGTTAACTAACAGTCCAAGCCCAAGGATCTTCTAGAATAATTTCTTGGAGTGATGGAACTAGAATGTAAGTTGTTGAACTTAAGGGACCAAACAAAATTCTATTCTCATATTTAGTGGCAATGAGAATAAAGATTGATTGATAACTTGAATCCCGTTAGAAGTTAGATAACCATTTGGTTTTTGGTCCTTGAGAACTAAATTTATAAACACAATTCTACCATCTCGATTTTTCATTTTGCTGTCTACTTTTTAAGAGTGTTTTAAAAAATTCAAGTCAAGTTTTGAAAACTGAAAAAAGTAGTTTCTAAAAAGTTATTTTTGTTTTCGGCATTTGGCTTGTACAAATGTTTATCTTGAAAGCATGAAAACTATGATTAAGAAATTGTAAAAAACCAAGTACAATTTATTAAAAACTAAAAACCAAATGCATGTTTGGAGTTCAAATTTCTTTCTAGATTTTGGAAGAACTCTAGATGGACTGTTAAATAATCTTTTGTTAACACAACCAAGCCAGTACGCATTGTACCATATCATCGTATCTTTTCTTACGCCTAAACTAGGAGAGAAATCACTTTAACGATATTAACTGTTACAAGACTTTCCACCACCTCAGTTTTGCTTAGTTAATTTCTAGTTGATGCTAGAATCTTCTCCTCTCTTATTATGATCTGTTGTTGGTTCTGTGAAGAATGCCAAATTGGCGCATCAGGAAGCAATAAAGCAAGGAGAAGAAGAAATTCATATGTGTGCTCGTGAACTACTTTCATGTCTTGACTCTGTCTCACAATATAAAGCAGTTGTTAGCTGCAAAATTTCAGATATGGAAAGCTGCCTCTCGAAGGCTGCTGCCGGTATCTCTGAGGCTTTCAAGATTTCTATGCCTGCAGTATAA

mRNA sequence

ATGGTGGAGGATGTTCAACAAGAAGCTCATAACTTAGATCTCGTGGAAGGAGAAGCAGAGGAGAGTTTGAAGAATGCCAAATTGGCGCATCAGGAAGCAATAAAGCAAGGAGAAGAAGAAATTCATATGTGTGCTCGTGAACTACTTTCATGTCTTGACTCTGTCTCACAATATAAAGCAGTTGTTAGCTGCAAAATTTCAGATATGGAAAGCTGCCTCTCGAAGGCTGCTGCCGGTATCTCTGAGGCTTTCAAGATTTCTATGCCTGCAGTATAA

Coding sequence (CDS)

ATGGTGGAGGATGTTCAACAAGAAGCTCATAACTTAGATCTCGTGGAAGGAGAAGCAGAGGAGAGTTTGAAGAATGCCAAATTGGCGCATCAGGAAGCAATAAAGCAAGGAGAAGAAGAAATTCATATGTGTGCTCGTGAACTACTTTCATGTCTTGACTCTGTCTCACAATATAAAGCAGTTGTTAGCTGCAAAATTTCAGATATGGAAAGCTGCCTCTCGAAGGCTGCTGCCGGTATCTCTGAGGCTTTCAAGATTTCTATGCCTGCAGTATAA

Protein sequence

MVEDVQQEAHNLDLVEGEAEESLKNAKLAHQEAIKQGEEEIHMCARELLSCLDSVSQYKAVVSCKISDMESCLSKAAAGISEAFKISMPAV*

Homology

[Close]

BLAST of Csa3G355040 vs. TrEMBL
Match: A0A0A0LCR5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G355040 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 3.2e-42
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1


Query: 1  MVEDVQQEAHNLDLVEGEAEESLKNAKLAHQEAIKQGEEEIHMCARELLSCLDSVSQYKA 60
          MVEDVQQEAHNLDLVEGEAEESLKNAKLAHQEAIKQGEEEIHMCARELLSCLDSVSQYKA
Sbjct: 1  MVEDVQQEAHNLDLVEGEAEESLKNAKLAHQEAIKQGEEEIHMCARELLSCLDSVSQYKA 60

Query: 61 VVSCKISDMESCLSKAAAGISEAFKISMPAV 92
          VVSCKISDMESCLSKAAAGISEAFKISMPAV
Sbjct: 61 VVSCKISDMESCLSKAAAGISEAFKISMPAV 91

[Close]

BLAST of Csa3G355040 vs. TrEMBL
Match: A0A0A0L740_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G213500 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 6.0e-41
Identity = 89/90 (98.89%), Postives = 89/90 (98.89%), Query Frame = 1


Query: 1   MVEDVQQEAHNLDLVEGEAEESLKNAKLAHQEAIKQGEEEIHMCARELLSCLDSVSQYKA 60
           MVEDVQQEAHNLDLVEGEAEESLKNAKLAHQEAIKQGEEEIHMCARELLSCLDSVSQYKA
Sbjct: 241 MVEDVQQEAHNLDLVEGEAEESLKNAKLAHQEAIKQGEEEIHMCARELLSCLDSVSQYKA 300

Query: 61  VVSCKISDMESCLSKAAAGISEAFKISMPA 91
           VVSCKISDMESCLSKAAAGISEAFK SMPA
Sbjct: 301 VVSCKISDMESCLSKAAAGISEAFKNSMPA 330

[Close]

BLAST of Csa3G355040 vs. TrEMBL
Match: A0A0D2SNK3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G260100 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.0e-16
Identity = 51/90 (56.67%), Postives = 64/90 (71.11%), Query Frame = 1


Query: 1   MVEDVQQEAHNLDLVEGEAEESLKNAKLAHQEAIKQGEEEIHMCARELLSCLDSVSQYKA 60
           MVEDVQ E H LD+ E EA E LK ++L  QEAI+Q EEEI + AR+L   +DSVS+YK 
Sbjct: 470 MVEDVQFETHKLDITEREAAEILKASQLRLQEAIQQSEEEIQIHARQLFMVVDSVSKYKE 529

Query: 61  VVSCKISDMESCLSKAAAGISEAFKISMPA 91
            V  KIS+M   LS+ AA IS+A+K S+PA
Sbjct: 530 HVESKISEMRVSLSETAAAISDAYKGSLPA 559

[Close]

BLAST of Csa3G355040 vs. TrEMBL
Match: A0A0B0MYM5_GOSAR (Kinetochore NDC80 OS=Gossypium arboreum GN=F383_03166 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.9e-16
Identity = 50/90 (55.56%), Postives = 64/90 (71.11%), Query Frame = 1


Query: 1   MVEDVQQEAHNLDLVEGEAEESLKNAKLAHQEAIKQGEEEIHMCARELLSCLDSVSQYKA 60
           MVEDVQ E H LD+ E EA E LK ++L  QEAI+Q EEEI + AR+L   +DSVS+YK 
Sbjct: 470 MVEDVQFETHKLDITEREATEILKASQLRLQEAIQQSEEEIQIHARQLFMVVDSVSKYKE 529

Query: 61  VVSCKISDMESCLSKAAAGISEAFKISMPA 91
            V  KIS+M   LS+ AA +S+A+K S+PA
Sbjct: 530 HVESKISEMRVSLSETAAAVSDAYKGSLPA 559

[Close]

BLAST of Csa3G355040 vs. TrEMBL
Match: F6H969_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0034g00950 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.1e-15
Identity = 46/90 (51.11%), Postives = 67/90 (74.44%), Query Frame = 1


Query: 1   MVEDVQQEAHNLDLVEGEAEESLKNAKLAHQEAIKQGEEEIHMCARELLSCLDSVSQYKA 60
           +VEDV+ E HN+D+VE E  + L+ +KL  QEAIKQ EEEI +CA EL + +DSVS+YK 
Sbjct: 472 LVEDVEIETHNVDIVEREVADVLETSKLKLQEAIKQNEEEIQICAWELYALVDSVSKYKE 531

Query: 61  VVSCKISDMESCLSKAAAGISEAFKISMPA 91
            ++ KIS+M+S LS+ A  +S+++K S+ A
Sbjct: 532 HMASKISEMKSNLSETAGAVSDSYKGSLSA 561

[Close]

BLAST of Csa3G355040 vs. TAIR10
Match: AT3G54630.1 (AT3G54630.1 Kinetochore protein Ndc80 (InterPro:IPR005550))

HSP 1 Score: 73.6 bits (179), Expect = 7.3e-14
Identity = 35/85 (41.18%), Postives = 58/85 (68.24%), Query Frame = 1


Query: 1   MVEDVQQEAHNLDLVEGEAEESLKNAKLAHQEAIKQGEEEIHMCARELLSCLDSVSQYKA 60
           +VE V+ EA NL++VE EA E +K ++L  QEA+K+ EEE+  CA +L + +DS+S+ K 
Sbjct: 475 LVESVKAEALNLEVVEKEAAEFVKASELRLQEAVKESEEEVQACAAQLFALIDSISKQKE 534

Query: 61  VVSCKISDMESCLSKAAAGISEAFK 86
            +  KIS++++ ++  A+ +SE +K
Sbjct: 535 YMDSKISEIKTGVADTASAVSEIYK 559

[Close]

BLAST of Csa3G355040 vs. NCBI nr
Match: gi|778680904|ref|XP_011651417.1| (PREDICTED: uncharacterized protein LOC101211369 [Cucumis sativus])

HSP 1 Score: 178.7 bits (452), Expect = 4.6e-42
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1


Query: 1   MVEDVQQEAHNLDLVEGEAEESLKNAKLAHQEAIKQGEEEIHMCARELLSCLDSVSQYKA 60
           MVEDVQQEAHNLDLVEGEAEESLKNAKLAHQEAIKQGEEEIHMCARELLSCLDSVSQYKA
Sbjct: 161 MVEDVQQEAHNLDLVEGEAEESLKNAKLAHQEAIKQGEEEIHMCARELLSCLDSVSQYKA 220

Query: 61  VVSCKISDMESCLSKAAAGISEAFKISMPAV 92
           VVSCKISDMESCLSKAAAGISEAFKISMPAV
Sbjct: 221 VVSCKISDMESCLSKAAAGISEAFKISMPAV 251

[Close]

BLAST of Csa3G355040 vs. NCBI nr
Match: gi|700202728|gb|KGN57861.1| (hypothetical protein Csa_3G355040 [Cucumis sativus])

HSP 1 Score: 178.7 bits (452), Expect = 4.6e-42
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1


Query: 1  MVEDVQQEAHNLDLVEGEAEESLKNAKLAHQEAIKQGEEEIHMCARELLSCLDSVSQYKA 60
          MVEDVQQEAHNLDLVEGEAEESLKNAKLAHQEAIKQGEEEIHMCARELLSCLDSVSQYKA
Sbjct: 1  MVEDVQQEAHNLDLVEGEAEESLKNAKLAHQEAIKQGEEEIHMCARELLSCLDSVSQYKA 60

Query: 61 VVSCKISDMESCLSKAAAGISEAFKISMPAV 92
          VVSCKISDMESCLSKAAAGISEAFKISMPAV
Sbjct: 61 VVSCKISDMESCLSKAAAGISEAFKISMPAV 91

[Close]

BLAST of Csa3G355040 vs. NCBI nr
Match: gi|778680142|ref|XP_004149971.2| (PREDICTED: kinetochore protein NDC80 homolog [Cucumis sativus])

HSP 1 Score: 174.5 bits (441), Expect = 8.7e-41
Identity = 89/90 (98.89%), Postives = 89/90 (98.89%), Query Frame = 1


Query: 1   MVEDVQQEAHNLDLVEGEAEESLKNAKLAHQEAIKQGEEEIHMCARELLSCLDSVSQYKA 60
           MVEDVQQEAHNLDLVEGEAEESLKNAKLAHQEAIKQGEEEIHMCARELLSCLDSVSQYKA
Sbjct: 475 MVEDVQQEAHNLDLVEGEAEESLKNAKLAHQEAIKQGEEEIHMCARELLSCLDSVSQYKA 534

Query: 61  VVSCKISDMESCLSKAAAGISEAFKISMPA 91
           VVSCKISDMESCLSKAAAGISEAFK SMPA
Sbjct: 535 VVSCKISDMESCLSKAAAGISEAFKNSMPA 564

[Close]

BLAST of Csa3G355040 vs. NCBI nr
Match: gi|700202425|gb|KGN57558.1| (hypothetical protein Csa_3G213500 [Cucumis sativus])

HSP 1 Score: 174.5 bits (441), Expect = 8.7e-41
Identity = 89/90 (98.89%), Postives = 89/90 (98.89%), Query Frame = 1


Query: 1   MVEDVQQEAHNLDLVEGEAEESLKNAKLAHQEAIKQGEEEIHMCARELLSCLDSVSQYKA 60
           MVEDVQQEAHNLDLVEGEAEESLKNAKLAHQEAIKQGEEEIHMCARELLSCLDSVSQYKA
Sbjct: 241 MVEDVQQEAHNLDLVEGEAEESLKNAKLAHQEAIKQGEEEIHMCARELLSCLDSVSQYKA 300

Query: 61  VVSCKISDMESCLSKAAAGISEAFKISMPA 91
           VVSCKISDMESCLSKAAAGISEAFK SMPA
Sbjct: 301 VVSCKISDMESCLSKAAAGISEAFKNSMPA 330

[Close]

BLAST of Csa3G355040 vs. NCBI nr
Match: gi|659077518|ref|XP_008439248.1| (PREDICTED: kinetochore protein NDC80 homolog [Cucumis melo])

HSP 1 Score: 163.3 bits (412), Expect = 2.0e-37
Identity = 84/89 (94.38%), Postives = 85/89 (95.51%), Query Frame = 1


Query: 1   MVEDVQQEAHNLDLVEGEAEESLKNAKLAHQEAIKQGEEEIHMCARELLSCLDSVSQYKA 60
           MVED QQEAHNLDLVEGEAEESLKNAKLA+QEA KQ EEEIHMCARELLSCLDSVSQYKA
Sbjct: 475 MVEDFQQEAHNLDLVEGEAEESLKNAKLANQEATKQEEEEIHMCARELLSCLDSVSQYKA 534

Query: 61  VVSCKISDMESCLSKAAAGISEAFKISMP 90
           VVSCKISDMESCLSKAAAGISEAFK SMP
Sbjct: 535 VVSCKISDMESCLSKAAAGISEAFKNSMP 563

The following BLAST results are available for this feature:

BLAST of Csa3G355040 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCR5_CUCSA	3.2e-42	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G355040 PE=4 SV=1	[more]
A0A0A0L740_CUCSA	6.0e-41	98.89	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G213500 PE=4 SV=1	[more]
A0A0D2SNK3_GOSRA	3.0e-16	56.67	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G260100 PE=4 SV=1	[more]
A0A0B0MYM5_GOSAR	3.9e-16	55.56	Kinetochore NDC80 OS=Gossypium arboreum GN=F383_03166 PE=4 SV=1	[more]
F6H969_VITVI	1.1e-15	51.11	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0034g00950 PE=4 SV=...	[more]

BLAST of Csa3G355040 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G54630.1	7.3e-14	41.18	Kinetochore protein Ndc80 (InterPro:IPR005550)	[more]

BLAST of Csa3G355040 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778680904\|ref\|XP_011651417.1\|	4.6e-42	100.00	PREDICTED: uncharacterized protein LOC101211369 [Cucumis sativus]	[more]
gi\|700202728\|gb\|KGN57861.1\|	4.6e-42	100.00	hypothetical protein Csa_3G355040 [Cucumis sativus]	[more]
gi\|778680142\|ref\|XP_004149971.2\|	8.7e-41	98.89	PREDICTED: kinetochore protein NDC80 homolog [Cucumis sativus]	[more]
gi\|700202425\|gb\|KGN57558.1\|	8.7e-41	98.89	hypothetical protein Csa_3G213500 [Cucumis sativus]	[more]
gi\|659077518\|ref\|XP_008439248.1\|	2.0e-37	94.38	PREDICTED: kinetochore protein NDC80 homolog [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0008152	metabolic process
biological_process	GO:0051315	attachment of mitotic spindle microtubules to kinetochore
biological_process	GO:0007010	cytoskeleton organization
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0000778	condensed nuclear chromosome kinetochore
cellular_component	GO:0031262	Ndc80 complex
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0043167	ion binding
molecular_function	GO:0005200	structural constituent of cytoskeleton

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G355040.1	Csa3G355040.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa3G355040	CSPI03G22030	Wild cucumber (PI 183967)	cpicuB120
Csa3G355040	Cucsa.012910	Cucumber (Gy14) v1	cgycuB291
Csa3G355040	CsGy3G021260	Cucumber (Gy14) v2	cgybcuB118

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G355040	Watermelon (97103) v1	cuwmB249
Csa3G355040	Cucurbita pepo (Zucchini)	cpecuB035
Csa3G355040	Cucurbita pepo (Zucchini)	cpecuB207
Csa3G355040	Bottle gourd (USVL1VR-Ls)	culsiB218
Csa3G355040	Cucumber (Gy14) v2	cgybcuB109
Csa3G355040	Melon (DHL92) v3.6.1	cumedB233
Csa3G355040	Melon (DHL92) v3.6.1	cumedB242
Csa3G355040	Silver-seed gourd	carcuB0566
Csa3G355040	Silver-seed gourd	carcuB1002
Csa3G355040	Watermelon (97103) v2	cuwmbB220
Csa3G355040	Wax gourd	cuwgoB289
Csa3G355040	Cucumber (Gy14) v1	cgycuB290
Csa3G355040	Cucurbita maxima (Rimu)	cmacuB322
Csa3G355040	Cucurbita maxima (Rimu)	cmacuB410
Csa3G355040	Cucurbita moschata (Rifu)	cmocuB311
Csa3G355040	Cucurbita moschata (Rifu)	cmocuB400
Csa3G355040	Melon (DHL92) v3.5.1	cumeB165
Csa3G355040	Melon (DHL92) v3.5.1	cumeB250
Csa3G355040	Watermelon (Charleston Gray)	cuwcgB235