Csa3G345380 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G345380
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionDouble-stranded RNA binding protein, putative; contains IPR014720 (Double-stranded RNA-binding-like domain)
LocationChr3 : 18018626 .. 18020702 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCGTCGTCAGGATTAAGAAACCCTGATCATCCTTTCACAGTGAAGAGAGCGAAAATCACCCGACATTCGTTCATTCATTCATAGCCACTGACTGATCGTTCCCATTTCACCAATTTGTTCTCCTCCAATTCCATTACCCTCGATAATAATCGACGATTATGGAAGAATCCGGTACAGTTGAAGCAGGTGCACCGCAACAATCTCCATTCCCGTCCGACTCAGTTCCAACTGTTGTTACCCCTCCTATTCCGGTAGAAAACTCCAATACTTTTCAGCCTCAACCAGATATTCATCCTCCATCTGTTTTACCGGACTTAGTTCCGATTCCAAGTGCGGCTCCAGCTCCGATTCCGTCTCCTAATCTCTCTGATCATACTCGTAAGTGTATGACAATGTTGCCCATCGTTCCGTTGAGGATGCATTTTTTGTTCTTGGTGTTTGGTTATAATTGTTTAGTGTTTTCGTTTCAGCAAATATCTGCCATATTAGATGGATTTCCTCTACATTTCGTGTAGTTAAGTTCCCCATCTGTTTTTGTTTTCTGTTAGAGAGAGAAGCAATTGCGAGCCATTTGTGTGTGTTGAAAGAATTATCTTGTTCTCCGTATTTGTCTATGAGGTCCTGAGAATTCAATTATAAGTTGCTATTTCTTACTTCCGTTTCCATCTTCTTTCCACAAATTTCGGATGGTCGGTTGTTTTGGAAGTTAGAATACTGGTAGTTCTGTGGCGATGATCTAGATATTCCTTCCTTGTTCGGTTTTTAAAACAAAAATAATTTGGAGAATTCTCTTGAAGAAAATTTCTACGGGGTTTACTTCTAGCCTATCTTCTTAACCACAATGAGTTGGCTTGGTGGTAAAAAAGGAGTATGAGTATATCTAGAGCTCGTGGGTTCAAACCTACCTAGAAATTAATTTACTACGAGTTGGATGGATTGTTTAGTAGATTAGTTTGCCCACACTCACATATATAAAAAAAACTCTAGCCTATCATCTTGCCCTCGATCCTTAGTGGCATGTTCTTCGCAAGAATAGTGAGACTATTTATTCACCTTCACCTCATAAGGCTGCTTTTCCTACATTCTGCTGTGTGCCTTTTGGAAGATGGAGAAACTAAAGATTAGACGCTTCAGGCATTGGTGGATTTGACTCATAACGAGGATGCTATCTTTGCAGACCAGTTTCTGGACAATTCTTTGGTGGATTTGATGTTATTTCTTTTTTATCTCGTGAGTTTTCTTTCTCTATGATTAAAGATGTAGGATCCTTTTCTTATAGTTTCTTTTGCCAGGTTTGCATGTTGGTTAGGCACTCAAGGCTATGTTTTTGTATGGTCTTTTTGTTCTTCCATTTCCCTCAATGACCATAACAGAAATGAAAGGAAAAAAGAATAAGTTGTTAACTGAAGAGGACGGTTATGCATTGGGTACTTATAATCTGACATTGCAAATTGAGGAACTTGTAATTTTCTACAGTCGTTCGTACACGTGGACTCTTCTAATGTTCCTCCTTTCACTTTTGGGCTTCAATTTGTTTATGAGTATTATTCAATGCATCCATCTTTATGCATCAAACAAATAGAGAGAATTAAAATATTTCAAAAACGATGTTAGAAGAATTTGGTGGGGTGTACATAGATACCTGTTTTCCCAGATGCACATGAGTATTTTTTTTATTCATATTTTATTCTAGTTGTGTAATACAAGACAAAGGTCCCCTCAGTTTTATTGTGCACGAATTTGTTATTTGGTGGATTTTTGTTCTTTATAAGAATGGAAGAGAAATCAATGTTATGGTTTTGCAGAAATCTTCGTGTACAAAAATCATTTGCACGAGTACACTCAAAAGGCAAAGATTGCAGTACCAGTATACCAGACTATTGATGAAGGGTCCCCAAGTCTGCCTAAATACAGGTCAACTGTGATGGTTGATGAGGTACATTATGTGTCTCCTAATACCTTCCGTAATCGAAGGGCGGCTGAGCAAGATGCTGCGAGAGTTGCCTTTGAGTACATATCAAAAAAGACAAAGGATGATGCCTTTCTTCTTCTACGTGAGGTACGAGTTATACAGTGA

mRNA sequence

ATGGAAGAATCCGGTACAGTTGAAGCAGGTGCACCGCAACAATCTCCATTCCCGTCCGACTCAGTTCCAACTGTTGTTACCCCTCCTATTCCGGTAGAAAACTCCAATACTTTTCAGCCTCAACCAGATATTCATCCTCCATCTGTTTTACCGGACTTAGTTCCGATTCCAAGTGCGGCTCCAGCTCCGATTCCGTCTCCTAATCTCTCTGATCATACTCAAATCTTCGTGTACAAAAATCATTTGCACGAGTACACTCAAAAGGCAAAGATTGCAGTACCAGTATACCAGACTATTGATGAAGGGTCCCCAAGTCTGCCTAAATACAGGTCAACTGTGATGGTTGATGAGGTACATTATGTGTCTCCTAATACCTTCCGTAATCGAAGGGCGGCTGAGCAAGATGCTGCGAGAGTTGCCTTTGAGTACATATCAAAAAAGACAAAGGATGATGCCTTTCTTCTTCTACGTGAGGTACGAGTTATACAGTGA

Coding sequence (CDS)

ATGGAAGAATCCGGTACAGTTGAAGCAGGTGCACCGCAACAATCTCCATTCCCGTCCGACTCAGTTCCAACTGTTGTTACCCCTCCTATTCCGGTAGAAAACTCCAATACTTTTCAGCCTCAACCAGATATTCATCCTCCATCTGTTTTACCGGACTTAGTTCCGATTCCAAGTGCGGCTCCAGCTCCGATTCCGTCTCCTAATCTCTCTGATCATACTCAAATCTTCGTGTACAAAAATCATTTGCACGAGTACACTCAAAAGGCAAAGATTGCAGTACCAGTATACCAGACTATTGATGAAGGGTCCCCAAGTCTGCCTAAATACAGGTCAACTGTGATGGTTGATGAGGTACATTATGTGTCTCCTAATACCTTCCGTAATCGAAGGGCGGCTGAGCAAGATGCTGCGAGAGTTGCCTTTGAGTACATATCAAAAAAGACAAAGGATGATGCCTTTCTTCTTCTACGTGAGGTACGAGTTATACAGTGA

Protein sequence

MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAAPAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLREVRVIQ*
Homology
[Close]
BLAST of Csa3G345380 vs. Swiss-Prot
Match: DRB7_ORYSJ (Double-stranded RNA-binding protein 7 OS=Oryza sativa subsp. japonica GN=DRB7 PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.8e-10
Identity = 43/111 (38.74%), Postives = 55/111 (49.55%), Query Frame = 1 

Query: 46  PPSVLP----DLVPIPSAAPAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDE 105
           PP+ LP    +  P P+ A A I   N       +V+K+ L EY QKA +  P Y T  E
Sbjct: 4   PPTPLPPETANTSPAPNGATAGIRVENC------YVFKSRLQEYAQKAGLQTPEYHTFKE 63

Query: 106 GSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDAARVAFEYISKKTKDDA 153
           G    P ++STV+++   Y S   F NR+AAEQ AA VA   I K    +A
Sbjct: 64  GPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSAAEVALMEIVKSIPANA 108

[Close]
BLAST of Csa3G345380 vs. Swiss-Prot
Match: DRB8_ORYSJ (Double-stranded RNA-binding protein 8 OS=Oryza sativa subsp. japonica GN=DRB8 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 8.3e-10
Identity = 42/111 (37.84%), Postives = 54/111 (48.65%), Query Frame = 1 

Query: 46  PPSVLP----DLVPIPSAAPAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDE 105
           PP+ LP    +  P P+ A A I   N       +V+K+ L EY QK  +  P Y T  E
Sbjct: 4   PPTPLPPETANTSPAPNGATAGIRVENC------YVFKSRLQEYAQKTGLQTPEYHTFKE 63

Query: 106 GSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDAARVAFEYISKKTKDDA 153
           G    P ++STV+++   Y S   F NR+AAEQ AA VA   I K    +A
Sbjct: 64  GPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSAAEVALMEIVKSIPANA 108

[Close]
BLAST of Csa3G345380 vs. Swiss-Prot
Match: DRB3_ORYSJ (Double-stranded RNA-binding protein 3 OS=Oryza sativa subsp. japonica GN=DRB3 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.1e-09
Identity = 39/102 (38.24%), Postives = 52/102 (50.98%), Query Frame = 1 

Query: 55  PIP----SAAPAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYR 114
           P+P    + +PAPI +         +V+K+ L EY QKA +  P Y T  EG    P ++
Sbjct: 9   PLPPETANTSPAPIGATAGIRVENCYVFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFK 68

Query: 115 STVMVDEVHYVSPNTFRNRRAAEQDAARVAFEYISKKTKDDA 153
           STV+++   Y S   F NR+AAEQ AA VA   I K    +A
Sbjct: 69  STVVINNTSYGSLPGFSNRKAAEQSAAEVALMEIVKSIPANA 110

[Close]
BLAST of Csa3G345380 vs. Swiss-Prot
Match: DRB1_ARATH (Double-stranded RNA-binding protein 1 OS=Arabidopsis thaliana GN=DRB1 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.1e-09
Identity = 32/74 (43.24%), Postives = 45/74 (60.81%), Query Frame = 1 

Query: 76  FVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQD 135
           +V+K+ L EY QK K+  PVY+ + EG      ++STV++D V Y S   F NR+AAEQ 
Sbjct: 14  YVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQS 73

Query: 136 AARVAFEYISKKTK 150
           AA VA   ++K ++
Sbjct: 74  AAEVALRELAKSSE 87

[Close]
BLAST of Csa3G345380 vs. Swiss-Prot
Match: DRB4_ORYSJ (Double-stranded RNA-binding protein 4 OS=Oryza sativa subsp. japonica GN=DRB4 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 7.7e-08
Identity = 37/96 (38.54%), Postives = 52/96 (54.17%), Query Frame = 1 

Query: 58  SAAPAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDE 117
           S AP P P P+ +       YK+ L EY Q+A   +P+Y T  +G     K++STVMVD 
Sbjct: 26  SPAPLPPPPPHCN-------YKSKLQEYLQQANKQLPIYCTKCKGEHHQLKFKSTVMVDG 85

Query: 118 VHYVSPNTFRNRRAAEQDAARVAFEYI--SKKTKDD 152
             + S    R  + AEQDAA+VA++ +   K+T+ D
Sbjct: 86  EEFSSTFCHRRVKDAEQDAAKVAYDTLLERKETETD 114

[Close]
BLAST of Csa3G345380 vs. TrEMBL
Match: A0A0A0LAZ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G345380 PE=4 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 5.3e-88
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 1 

Query: 1   MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA 60
           MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA
Sbjct: 1   MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA 60

Query: 61  PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY 120
           PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY
Sbjct: 61  PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY 120

Query: 121 VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLREVRVIQ 164
           VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLREVRVIQ
Sbjct: 121 VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLREVRVIQ 163

[Close]
BLAST of Csa3G345380 vs. TrEMBL
Match: A0A067KA91_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13421 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.2e-20
Identity = 59/136 (43.38%), Postives = 80/136 (58.82%), Query Frame = 1 

Query: 29  PIPVENSNTFQPQPDIHPPSVLPDLVPIPSAAPAPIPSP---NLSDHTQIFVYKNHLHEY 88
           P P  +SN          P+     VP+ + APAP  S    +        ++KN L EY
Sbjct: 4   PKPYYDSNRNHAASQYQNPNQASASVPLLAQAPAPATSTVAASTPSSPHQLMHKNRLQEY 63

Query: 89  TQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDAARVAFEYIS 148
           TQK+ + +P+YQT++EG    P++RSTV+VD   Y SPNTF +R+ AEQDAARVA E I 
Sbjct: 64  TQKSSLQLPIYQTVNEGHQHAPRFRSTVIVDGEQYTSPNTFAHRKGAEQDAARVAMECIL 123

Query: 149 KKTKDDAFLLLREVRV 162
           KKTKD+   L+ E +V
Sbjct: 124 KKTKDEGCPLIYEDKV 139

[Close]
BLAST of Csa3G345380 vs. TrEMBL
Match: D7TSR3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0006g01440 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.1e-20
Identity = 51/100 (51.00%), Postives = 71/100 (71.00%), Query Frame = 1 

Query: 59  AAPAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEV 118
           AA    P+P+ +   +  ++KN L EYTQ++ I +P+YQT++EG    PK+RSTV+VD  
Sbjct: 4   AAKVDCPAPSSTRLPEHLMHKNRLQEYTQRSAIPLPIYQTVNEGFQHAPKFRSTVLVDGA 63

Query: 119 HYVSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLRE 159
            Y SPNTF +R+AAEQD AR+A E+ISKK KD+   L+RE
Sbjct: 64  TYTSPNTFSHRKAAEQDVARLALEFISKKIKDEGCPLIRE 103

[Close]
BLAST of Csa3G345380 vs. TrEMBL
Match: A0A0B0MSI8_GOSAR (Double-stranded RNA-binding 4 OS=Gossypium arboreum GN=F383_22957 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.8e-19
Identity = 58/129 (44.96%), Postives = 81/129 (62.79%), Query Frame = 1 

Query: 32  VENSNTFQPQPDIHPPSVLPDLVP--IPSAAPAPIPSPNLSDHTQIFVYKNHLHEYTQKA 91
           +EN     PQP++      P L    +P  A +P+P    S   + F++KN L E+TQ++
Sbjct: 1   MENPLAHFPQPELVDQPSAPVLASSNVPPLA-SPLPHSLRSRPPESFMHKNRLQEFTQRS 60

Query: 92  KIAVPVYQTIDEGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDAARVAFEYISKKTK 151
            I +PVYQT++EGS   P++RS+V+VD V Y S  TF NR+AAEQD A+ A E ISKK K
Sbjct: 61  SIQLPVYQTVNEGSVHAPQFRSSVLVDGVTYTSETTFSNRKAAEQDVAKHALECISKKLK 120

Query: 152 DDAFLLLRE 159
           D+   L+RE
Sbjct: 121 DEGCPLIRE 128

[Close]
BLAST of Csa3G345380 vs. TrEMBL
Match: U5GC64_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s14370g PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.3e-19
Identity = 67/185 (36.22%), Postives = 90/185 (48.65%), Query Frame = 1 

Query: 6   TVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPD-------IHPPSVLPDLVPIPS 65
           T +  AP Q+P P    PT    P+P + + +  P PD       +H P+  P  VP P+
Sbjct: 38  TSQVIAPNQAPVPD---PTPSQAPVP-DPTPSQAPVPDPTPSPAPVHEPTPSPAPVPDPT 97

Query: 66  AAPAPIPSPNLSDHTQI---------------------------FVYKNHLHEYTQKAKI 125
             PAP P   LS                                 +YKN L EYTQK+ +
Sbjct: 98  PNPAPAPDSTLSPSPAASTTTLTSRVSENISFSKKLVKKGLPDNLMYKNRLQEYTQKSSL 157

Query: 126 AVPVYQTIDEGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDAARVAFEYISKKTKDD 157
            +PVYQT++EG   +P++RSTV VD   Y S  TF +R+AAEQD A +A E I K+ KD+
Sbjct: 158 QLPVYQTLNEGPAHMPRFRSTVWVDGARYRSQKTFLHRKAAEQDVANLALESILKRVKDE 217

[Close]
BLAST of Csa3G345380 vs. TAIR10
Match: AT1G09700.1 (AT1G09700.1 dsRNA-binding domain-like superfamily protein)

HSP 1 Score: 64.7 bits (156), Expect = 6.1e-11
Identity = 32/74 (43.24%), Postives = 45/74 (60.81%), Query Frame = 1 

Query: 76  FVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQD 135
           +V+K+ L EY QK K+  PVY+ + EG      ++STV++D V Y S   F NR+AAEQ 
Sbjct: 14  YVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQS 73

Query: 136 AARVAFEYISKKTK 150
           AA VA   ++K ++
Sbjct: 74  AAEVALRELAKSSE 87

[Close]
BLAST of Csa3G345380 vs. NCBI nr
Match: gi|700202704|gb|KGN57837.1| (hypothetical protein Csa_3G345380 [Cucumis sativus])

HSP 1 Score: 331.6 bits (849), Expect = 7.6e-88
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 1 

Query: 1   MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA 60
           MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA
Sbjct: 1   MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA 60

Query: 61  PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY 120
           PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY
Sbjct: 61  PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY 120

Query: 121 VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLREVRVIQ 164
           VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLREVRVIQ
Sbjct: 121 VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLREVRVIQ 163

[Close]
BLAST of Csa3G345380 vs. NCBI nr
Match: gi|449464150|ref|XP_004149792.1| (PREDICTED: uncharacterized protein LOC101213863 isoform X1 [Cucumis sativus])

HSP 1 Score: 323.2 bits (827), Expect = 2.7e-85
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 1 

Query: 1   MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA 60
           MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA
Sbjct: 1   MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA 60

Query: 61  PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY 120
           PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY
Sbjct: 61  PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY 120

Query: 121 VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLRE 159
           VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLRE
Sbjct: 121 VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLRE 158

[Close]
BLAST of Csa3G345380 vs. NCBI nr
Match: gi|778680848|ref|XP_011651406.1| (PREDICTED: double-stranded RNA-binding protein 3 isoform X3 [Cucumis sativus])

HSP 1 Score: 323.2 bits (827), Expect = 2.7e-85
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 1 

Query: 1   MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA 60
           MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA
Sbjct: 1   MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA 60

Query: 61  PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY 120
           PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY
Sbjct: 61  PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY 120

Query: 121 VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLRE 159
           VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLRE
Sbjct: 121 VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLRE 158

[Close]
BLAST of Csa3G345380 vs. NCBI nr
Match: gi|778680845|ref|XP_011651405.1| (PREDICTED: double-stranded RNA-binding protein 4 isoform X2 [Cucumis sativus])

HSP 1 Score: 323.2 bits (827), Expect = 2.7e-85
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 1 

Query: 1   MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA 60
           MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA
Sbjct: 1   MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA 60

Query: 61  PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY 120
           PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY
Sbjct: 61  PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY 120

Query: 121 VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLRE 159
           VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLRE
Sbjct: 121 VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLRE 158

[Close]
BLAST of Csa3G345380 vs. NCBI nr
Match: gi|659114472|ref|XP_008457068.1| (PREDICTED: double-stranded RNA-binding protein 4-like isoform X3 [Cucumis melo])

HSP 1 Score: 288.1 bits (736), Expect = 9.6e-75
Identity = 141/158 (89.24%), Postives = 149/158 (94.30%), Query Frame = 1 

Query: 1   MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA 60
           ME SGTVEAGAPQQSPF SDSVPTVVTPPIPV+N +T Q QP+IHPPSVLPDLV IPSAA
Sbjct: 1   MEASGTVEAGAPQQSPFRSDSVPTVVTPPIPVQNFHTLQSQPNIHPPSVLPDLVLIPSAA 60

Query: 61  PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY 120
           PAPIPSPNLSD TQIFVYKNHLHEY QKA+IAVPVYQTIDEGSP LPK+RSTV++DEVHY
Sbjct: 61  PAPIPSPNLSDPTQIFVYKNHLHEYAQKARIAVPVYQTIDEGSPGLPKFRSTVLLDEVHY 120

Query: 121 VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLRE 159
           VSPNTFRNRRAAEQDAAR+AFEYISKKTKDDAFLLLRE
Sbjct: 121 VSPNTFRNRRAAEQDAARIAFEYISKKTKDDAFLLLRE 158

The following BLAST results are available for this feature:
BLAST of Csa3G345380 vs. Swiss-Prot
Match NameE-valueIdentityDescription
DRB7_ORYSJ2.8e-1038.74Double-stranded RNA-binding protein 7 OS=Oryza sativa subsp. japonica GN=DRB7 PE... [more]
DRB8_ORYSJ8.3e-1037.84Double-stranded RNA-binding protein 8 OS=Oryza sativa subsp. japonica GN=DRB8 PE... [more]
DRB3_ORYSJ1.1e-0938.24Double-stranded RNA-binding protein 3 OS=Oryza sativa subsp. japonica GN=DRB3 PE... [more]
DRB1_ARATH1.1e-0943.24Double-stranded RNA-binding protein 1 OS=Arabidopsis thaliana GN=DRB1 PE=1 SV=1[more]
DRB4_ORYSJ7.7e-0838.54Double-stranded RNA-binding protein 4 OS=Oryza sativa subsp. japonica GN=DRB4 PE... [more]
BLAST of Csa3G345380 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LAZ4_CUCSA5.3e-88100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G345380 PE=4 SV=1[more]
A0A067KA91_JATCU1.2e-2043.38Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13421 PE=4 SV=1[more]
D7TSR3_VITVI2.1e-2051.00Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0006g01440 PE=4 SV=... [more]
A0A0B0MSI8_GOSAR1.8e-1944.96Double-stranded RNA-binding 4 OS=Gossypium arboreum GN=F383_22957 PE=4 SV=1[more]
U5GC64_POPTR2.3e-1936.22Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s14370g PE=4 SV=1[more]
BLAST of Csa3G345380 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G09700.16.1e-1143.24 dsRNA-binding domain-like superfamily protein[more]
BLAST of Csa3G345380 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202704|gb|KGN57837.1|7.6e-88100.00hypothetical protein Csa_3G345380 [Cucumis sativus][more]
gi|449464150|ref|XP_004149792.1|2.7e-85100.00PREDICTED: uncharacterized protein LOC101213863 isoform X1 [Cucumis sativus][more]
gi|778680848|ref|XP_011651406.1|2.7e-85100.00PREDICTED: double-stranded RNA-binding protein 3 isoform X3 [Cucumis sativus][more]
gi|778680845|ref|XP_011651405.1|2.7e-85100.00PREDICTED: double-stranded RNA-binding protein 4 isoform X2 [Cucumis sativus][more]
gi|659114472|ref|XP_008457068.1|9.6e-7589.24PREDICTED: double-stranded RNA-binding protein 4-like isoform X3 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR014720dsRBD_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003725 double-stranded RNA binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU160329cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G345380.1Csa3G345380.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU160329CU160329transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014720Double-stranded RNA-binding domainGENE3DG3DSA:3.30.160.20coord: 78..144
score: 2.4
IPR014720Double-stranded RNA-binding domainPFAMPF00035dsrmcoord: 78..143
score: 1.
IPR014720Double-stranded RNA-binding domainSMARTSM00358DRBM_3coord: 78..145
score: 5.5
IPR014720Double-stranded RNA-binding domainPROFILEPS50137DS_RBDcoord: 77..146
score: 11
NoneNo IPR availablePANTHERPTHR11207RIBONUCLEASE IIIcoord: 2..162
score: 3.0
NoneNo IPR availablePANTHERPTHR11207:SF8SUBFAMILY NOT NAMEDcoord: 2..162
score: 3.0
NoneNo IPR availableunknownSSF54768dsRNA-binding domain-likecoord: 73..144
score: 2.67

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa3G345380CSPI03G21790Wild cucumber (PI 183967)cpicuB120
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G345380Melon (DHL92) v3.5.1cumeB246
Csa3G345380Watermelon (Charleston Gray)cuwcgB233
Csa3G345380Watermelon (97103) v1cuwmB245
Csa3G345380Cucurbita pepo (Zucchini)cpecuB547
Csa3G345380Cucurbita pepo (Zucchini)cpecuB600
Csa3G345380Bottle gourd (USVL1VR-Ls)culsiB212
Csa3G345380Cucumber (Gy14) v2cgybcuB109
Csa3G345380Melon (DHL92) v3.6.1cumedB239
Csa3G345380Silver-seed gourdcarcuB0780
Csa3G345380Watermelon (97103) v2cuwmbB218
Csa3G345380Wax gourdcuwgoB299
Csa3G345380Cucumber (Gy14) v1cgycuB290
Csa3G345380Cucurbita maxima (Rimu)cmacuB242
Csa3G345380Cucurbita maxima (Rimu)cmacuB455
Csa3G345380Cucurbita moschata (Rifu)cmocuB229
Csa3G345380Cucurbita moschata (Rifu)cmocuB442