CSPI03G21790 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G21790
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionDouble-stranded RNA-binding
LocationChr3 : 18197221 .. 18199325 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AATTTAACCCTTCAACGTCATTAATATCTCGTCGTCAGGATTAAGAAACCCTGATCATCCTTTCACAGTGAAGAGAGCGAAAATCACCCGACATTCGTTCATTCATTCATAGCCACTGACTGATCGTTCCCATTTCACCAATTTGTTCTCCTCCAATTCCATTACCCTCGATAATAATCGACGATTATGGAAGAATCCGGTACAGTTGAAGCAGGTGCACCGCAACAATCTCCATTCCCGTCCGACTCAGTTCCAACTGTTGTTACCCCTCCTATTCCGGTAGAAAACTCCAATACTTTTCAGCCTCAACCAGATATTCATCCTCCATCTGTTTTACCGGACTTAGTTCCGATTCCAAGTGCGGCTCCAGCTCCGATTCCGTCTCCTAATCTCTCTGATCATACTCGTAAGTGTATGACAATGTTGCCCATCGTTCCGTTGAGGATGCATTTTTTGTTCTTGGTGTTTGGTTATAATTGTTTAGTGTTTTCGTTTCAGCAAATATCTGCCATATTAGATGGATTTCCTCTACATTTCGTGTACTTAAGTTCCCCATCTGTTTTTGTTTTCTGTTAGAGAGAGAAGCAATTGCGAGCCATTTGTGTGTGTTGAAAGAATTATCTTGTTCTCCGTATGTGTCTATGAGGTCCTGAGAATTCAATTATAAGTTGCTATTTCTTACTTCCGTTTCCATCTTCTTTCCACAAATTTTGGATGGTCGGTTGTTTTGGAAGTTAGAATACTGGTAGTTCTGTGGCGATGATCTAGATATTCCTTCCTTGTTCGGTTTTTAAAACAAAAATAATTTGGAGAATTCTCTTGAAGAAAATTTCTACGGGGTTTACTTCTAGCCTATCTTCTTAACCACAATGAGTTGGCTTGGTGGTAAAAAAGGAGTATGAGTATATCTAGAGCTCGTGGGTTCAAACCTACCTAGAAATTAATTTACTACGAGTTGGACGGATTGTTTAGTAGATTAGTTTGCCCACACTCACATATATAAAAAAAACTCTAGCCTATCATCTTGCCCTCGATCCTTAGTGGCATGTTCTTCGCAAGAATAGTGAGACTATTTATTCACCTTCACCTCATAAGGCTGCTTTTCCTACATTCTGCTGTGTGCCTTTTGGAAGATGGAGAAACTAAAGATTAGACGCTTCAGGCATTGGTGGATTTGACTCATAATGAGGATGCTATCTTTGCAGACCAGTTTCTGGACAATTCTTTGGTGGATTTGATGTTATTTCTTTTTTATCTCGTGAGTTTTCTTTCTCTATGATTAAAGATGTAGGATCCTTTTCTTATAGTTTCTTTTGCCAGGTTTGCATGTTGGTTAGGCACTCAAGGCTATGTTTTTGTATGGTCTTTTTGTTCTTCCATTTCCCTCAATGACCATAACAGAAATGAAAGGAAAAAAGAATAAGTTGTTAACTGAAGAGGACGGTTATGCATTGGGTACTTATAATCTGACATTGCAAATTGAGGAACTTGTAATTTTCTACAGTCGTTCGTACACGTGGACTCTTCTAATGTTCCTCCTTTCACTTTTGGGCTTCAATTTGTTTATGAGTATTATTCAATGCATCCATCTTTATGCATCACACAAATAGAGAGAATTAAAATATTTCAAAAACGATGTTAGAAGAATTTGGTGGGGTGTACATAGATACCTGTTTTCCCAGATGCACATGAGTATTTTTTTTATTCATATTTTATTCTAGTTGTGTAATACAAGACAAAGGTCCCCTCAGTTTTATTGTGCACGAATTTGTTATTTGGTGGATTTTTGTTCTTTATAAGAATGGAAGAGAAATCAATGTTATGGTTTTGCAGAAATCTTCGTGTACAAAAATCATTTGCACGAGTACACTCAAAAGGCAAAGATTGCAGTACCAGTATACCAGACTATTGATGAAGGGTCCCCAAGTCTGCCTAAATACAGGTCAACTGTGATGGTTGATGAGGTACATTATGTGTCTCCTAATACCTTCCGTAATCGAAGGGCGGCTGAGCAAGATGCTGCGAGAGTTGCCTTTGAGTACATATCAAAAAAGACAAAGGATGATGCCTTTCTTCTTCTACGTGAGGTACGAGTTATACAGTGA

mRNA sequence

ATGGAAGAATCCGGTACAGTTGAAGCAGGTGCACCGCAACAATCTCCATTCCCGTCCGACTCAGTTCCAACTGTTGTTACCCCTCCTATTCCGGTAGAAAACTCCAATACTTTTCAGCCTCAACCAGATATTCATCCTCCATCTGTTTTACCGGACTTAGTTCCGATTCCAAGTGCGGCTCCAGCTCCGATTCCGTCTCCTAATCTCTCTGATCATACTCAAATCTTCGTGTACAAAAATCATTTGCACGAGTACACTCAAAAGGCAAAGATTGCAGTACCAGTATACCAGACTATTGATGAAGGGTCCCCAAGTCTGCCTAAATACAGGTCAACTGTGATGGTTGATGAGGTACATTATGTGTCTCCTAATACCTTCCGTAATCGAAGGGCGGCTGAGCAAGATGCTGCGAGAGTTGCCTTTGAGTACATATCAAAAAAGACAAAGGATGATGCCTTTCTTCTTCTACGTGAGGTACGAGTTATACAGTGA

Coding sequence (CDS)

ATGGAAGAATCCGGTACAGTTGAAGCAGGTGCACCGCAACAATCTCCATTCCCGTCCGACTCAGTTCCAACTGTTGTTACCCCTCCTATTCCGGTAGAAAACTCCAATACTTTTCAGCCTCAACCAGATATTCATCCTCCATCTGTTTTACCGGACTTAGTTCCGATTCCAAGTGCGGCTCCAGCTCCGATTCCGTCTCCTAATCTCTCTGATCATACTCAAATCTTCGTGTACAAAAATCATTTGCACGAGTACACTCAAAAGGCAAAGATTGCAGTACCAGTATACCAGACTATTGATGAAGGGTCCCCAAGTCTGCCTAAATACAGGTCAACTGTGATGGTTGATGAGGTACATTATGTGTCTCCTAATACCTTCCGTAATCGAAGGGCGGCTGAGCAAGATGCTGCGAGAGTTGCCTTTGAGTACATATCAAAAAAGACAAAGGATGATGCCTTTCTTCTTCTACGTGAGGTACGAGTTATACAGTGA
Homology
[Close]
BLAST of CSPI03G21790 vs. Swiss-Prot
Match: DRB1_ARATH (Double-stranded RNA-binding protein 1 OS=Arabidopsis thaliana GN=DRB1 PE=1 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.4e-09
Identity = 32/74 (43.24%), Postives = 47/74 (63.51%), Query Frame = 1 

Query: 76  FVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQD 135
           +V+K+ L EY QK K+  PVY+ + EG      ++STV++D V Y S   F NR+AAEQ 
Sbjct: 14  YVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQS 73

Query: 136 AARVAFEYISKKTK 150
           AA VA   ++K ++
Sbjct: 74  AAEVALRELAKSSE 87

[Close]
BLAST of CSPI03G21790 vs. Swiss-Prot
Match: DRB3_ORYSJ (Double-stranded RNA-binding protein 3 OS=Oryza sativa subsp. japonica GN=DRB3 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 9.1e-09
Identity = 39/102 (38.24%), Postives = 54/102 (52.94%), Query Frame = 1 

Query: 55  PIP----SAAPAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYR 114
           P+P    + +PAPI +         +V+K+ L EY QKA +  P Y T  EG    P ++
Sbjct: 9   PLPPETANTSPAPIGATAGIRVENCYVFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFK 68

Query: 115 STVMVDEVHYVSPNTFRNRRAAEQDAARVAFEYISKKTKDDA 153
           STV+++   Y S   F NR+AAEQ AA VA   I K    +A
Sbjct: 69  STVVINNTSYGSLPGFSNRKAAEQSAAEVALMEIVKSIPANA 110

[Close]
BLAST of CSPI03G21790 vs. Swiss-Prot
Match: DRB7_ORYSJ (Double-stranded RNA-binding protein 7 OS=Oryza sativa subsp. japonica GN=DRB7 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.2e-08
Identity = 43/111 (38.74%), Postives = 57/111 (51.35%), Query Frame = 1 

Query: 46  PPSVLP----DLVPIPSAAPAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDE 105
           PP+ LP    +  P P+ A A I   N       +V+K+ L EY QKA +  P Y T  E
Sbjct: 4   PPTPLPPETANTSPAPNGATAGIRVENC------YVFKSRLQEYAQKAGLQTPEYHTFKE 63

Query: 106 GSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDAARVAFEYISKKTKDDA 153
           G    P ++STV+++   Y S   F NR+AAEQ AA VA   I K    +A
Sbjct: 64  GPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSAAEVALMEIVKSIPANA 108

[Close]
BLAST of CSPI03G21790 vs. Swiss-Prot
Match: DRB8_ORYSJ (Double-stranded RNA-binding protein 8 OS=Oryza sativa subsp. japonica GN=DRB8 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.5e-08
Identity = 42/111 (37.84%), Postives = 56/111 (50.45%), Query Frame = 1 

Query: 46  PPSVLP----DLVPIPSAAPAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDE 105
           PP+ LP    +  P P+ A A I   N       +V+K+ L EY QK  +  P Y T  E
Sbjct: 4   PPTPLPPETANTSPAPNGATAGIRVENC------YVFKSRLQEYAQKTGLQTPEYHTFKE 63

Query: 106 GSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDAARVAFEYISKKTKDDA 153
           G    P ++STV+++   Y S   F NR+AAEQ AA VA   I K    +A
Sbjct: 64  GPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSAAEVALMEIVKSIPANA 108

[Close]
BLAST of CSPI03G21790 vs. Swiss-Prot
Match: DRB4_ORYSJ (Double-stranded RNA-binding protein 4 OS=Oryza sativa subsp. japonica GN=DRB4 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.9e-07
Identity = 37/96 (38.54%), Postives = 54/96 (56.25%), Query Frame = 1 

Query: 58  SAAPAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDE 117
           S AP P P P+ +       YK+ L EY Q+A   +P+Y T  +G     K++STVMVD 
Sbjct: 26  SPAPLPPPPPHCN-------YKSKLQEYLQQANKQLPIYCTKCKGEHHQLKFKSTVMVDG 85

Query: 118 VHYVSPNTFRNRRAAEQDAARVAFEYI--SKKTKDD 152
             + S    R  + AEQDAA+VA++ +   K+T+ D
Sbjct: 86  EEFSSTFCHRRVKDAEQDAAKVAYDTLLERKETETD 114

[Close]
BLAST of CSPI03G21790 vs. TrEMBL
Match: A0A0A0LAZ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G345380 PE=4 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 9.3e-85
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 1 

Query: 1   MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA 60
           MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA
Sbjct: 1   MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA 60

Query: 61  PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY 120
           PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY
Sbjct: 61  PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY 120

Query: 121 VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLREVRVIQ 164
           VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLREVRVIQ
Sbjct: 121 VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLREVRVIQ 163

[Close]
BLAST of CSPI03G21790 vs. TrEMBL
Match: D7TSR3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0006g01440 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 8.0e-20
Identity = 51/100 (51.00%), Postives = 71/100 (71.00%), Query Frame = 1 

Query: 59  AAPAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEV 118
           AA    P+P+ +   +  ++KN L EYTQ++ I +P+YQT++EG    PK+RSTV+VD  
Sbjct: 4   AAKVDCPAPSSTRLPEHLMHKNRLQEYTQRSAIPLPIYQTVNEGFQHAPKFRSTVLVDGA 63

Query: 119 HYVSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLRE 159
            Y SPNTF +R+AAEQD AR+A E+ISKK KD+   L+RE
Sbjct: 64  TYTSPNTFSHRKAAEQDVARLALEFISKKIKDEGCPLIRE 103

[Close]
BLAST of CSPI03G21790 vs. TrEMBL
Match: A0A067KA91_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13421 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.5e-18
Identity = 59/136 (43.38%), Postives = 80/136 (58.82%), Query Frame = 1 

Query: 29  PIPVENSNTFQPQPDIHPPSVLPDLVPIPSAAPAPIPSP---NLSDHTQIFVYKNHLHEY 88
           P P  +SN          P+     VP+ + APAP  S    +        ++KN L EY
Sbjct: 4   PKPYYDSNRNHAASQYQNPNQASASVPLLAQAPAPATSTVAASTPSSPHQLMHKNRLQEY 63

Query: 89  TQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDAARVAFEYIS 148
           TQK+ + +P+YQT++EG    P++RSTV+VD   Y SPNTF +R+ AEQDAARVA E I 
Sbjct: 64  TQKSSLQLPIYQTVNEGHQHAPRFRSTVIVDGEQYTSPNTFAHRKGAEQDAARVAMECIL 123

Query: 149 KKTKDDAFLLLREVRV 162
           KKTKD+   L+ E +V
Sbjct: 124 KKTKDEGCPLIYEDKV 139

[Close]
BLAST of CSPI03G21790 vs. TrEMBL
Match: A0A0B0MSI8_GOSAR (Double-stranded RNA-binding 4 OS=Gossypium arboreum GN=F383_22957 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 5.7e-18
Identity = 58/129 (44.96%), Postives = 81/129 (62.79%), Query Frame = 1 

Query: 32  VENSNTFQPQPDIHPPSVLPDLVP--IPSAAPAPIPSPNLSDHTQIFVYKNHLHEYTQKA 91
           +EN     PQP++      P L    +P  A +P+P    S   + F++KN L E+TQ++
Sbjct: 1   MENPLAHFPQPELVDQPSAPVLASSNVPPLA-SPLPHSLRSRPPESFMHKNRLQEFTQRS 60

Query: 92  KIAVPVYQTIDEGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDAARVAFEYISKKTK 151
            I +PVYQT++EGS   P++RS+V+VD V Y S  TF NR+AAEQD A+ A E ISKK K
Sbjct: 61  SIQLPVYQTVNEGSVHAPQFRSSVLVDGVTYTSETTFSNRKAAEQDVAKHALECISKKLK 120

Query: 152 DDAFLLLRE 159
           D+   L+RE
Sbjct: 121 DEGCPLIRE 128

[Close]
BLAST of CSPI03G21790 vs. TrEMBL
Match: A0A0D2SVL8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G058500 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 9.8e-18
Identity = 58/132 (43.94%), Postives = 82/132 (62.12%), Query Frame = 1 

Query: 32  VENSNTFQPQPDIHPPSVLPDLVP--IPSAAPAPIPSPNLSDHTQIFVYKNHLHEYTQKA 91
           +EN     PQP++      P L    +P  A  P+P    S   + F++KN L E+TQ++
Sbjct: 1   MENPLAHFPQPELVDQPSAPVLASSNVPPLA-CPLPHSLPSRPPESFMHKNRLQEFTQRS 60

Query: 92  KIAVPVYQTIDEGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDAARVAFEYISKKTK 151
            I +PVYQT++EGS   P++RS+V+VD V Y S  TF NR+AAEQD A+ A E ISKK K
Sbjct: 61  SIQLPVYQTVNEGSVHAPQFRSSVLVDGVTYTSEATFSNRKAAEQDVAKHALECISKKLK 120

Query: 152 DDAFLLLREVRV 162
           D+   L+RE+ +
Sbjct: 121 DEGCPLIREMNL 131

[Close]
BLAST of CSPI03G21790 vs. TAIR10
Match: AT1G09700.1 (AT1G09700.1 dsRNA-binding domain-like superfamily protein)

HSP 1 Score: 64.3 bits (155), Expect = 7.9e-11
Identity = 32/74 (43.24%), Postives = 47/74 (63.51%), Query Frame = 1 

Query: 76  FVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQD 135
           +V+K+ L EY QK K+  PVY+ + EG      ++STV++D V Y S   F NR+AAEQ 
Sbjct: 14  YVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQS 73

Query: 136 AARVAFEYISKKTK 150
           AA VA   ++K ++
Sbjct: 74  AAEVALRELAKSSE 87

[Close]
BLAST of CSPI03G21790 vs. NCBI nr
Match: gi|700202704|gb|KGN57837.1| (hypothetical protein Csa_3G345380 [Cucumis sativus])

HSP 1 Score: 320.9 bits (821), Expect = 1.3e-84
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 1 

Query: 1   MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA 60
           MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA
Sbjct: 1   MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA 60

Query: 61  PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY 120
           PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY
Sbjct: 61  PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY 120

Query: 121 VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLREVRVIQ 164
           VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLREVRVIQ
Sbjct: 121 VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLREVRVIQ 163

[Close]
BLAST of CSPI03G21790 vs. NCBI nr
Match: gi|449464150|ref|XP_004149792.1| (PREDICTED: uncharacterized protein LOC101213863 isoform X1 [Cucumis sativus])

HSP 1 Score: 312.4 bits (799), Expect = 4.7e-82
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 1 

Query: 1   MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA 60
           MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA
Sbjct: 1   MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA 60

Query: 61  PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY 120
           PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY
Sbjct: 61  PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY 120

Query: 121 VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLRE 159
           VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLRE
Sbjct: 121 VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLRE 158

[Close]
BLAST of CSPI03G21790 vs. NCBI nr
Match: gi|778680845|ref|XP_011651405.1| (PREDICTED: double-stranded RNA-binding protein 4 isoform X2 [Cucumis sativus])

HSP 1 Score: 312.4 bits (799), Expect = 4.7e-82
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 1 

Query: 1   MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA 60
           MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA
Sbjct: 1   MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA 60

Query: 61  PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY 120
           PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY
Sbjct: 61  PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY 120

Query: 121 VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLRE 159
           VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLRE
Sbjct: 121 VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLRE 158

[Close]
BLAST of CSPI03G21790 vs. NCBI nr
Match: gi|778680848|ref|XP_011651406.1| (PREDICTED: double-stranded RNA-binding protein 3 isoform X3 [Cucumis sativus])

HSP 1 Score: 312.4 bits (799), Expect = 4.7e-82
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 1 

Query: 1   MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA 60
           MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA
Sbjct: 1   MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA 60

Query: 61  PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY 120
           PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY
Sbjct: 61  PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY 120

Query: 121 VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLRE 159
           VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLRE
Sbjct: 121 VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLRE 158

[Close]
BLAST of CSPI03G21790 vs. NCBI nr
Match: gi|659114470|ref|XP_008457067.1| (PREDICTED: double-stranded RNA-binding protein 4-like isoform X2 [Cucumis melo])

HSP 1 Score: 277.3 bits (708), Expect = 1.7e-71
Identity = 141/158 (89.24%), Postives = 149/158 (94.30%), Query Frame = 1 

Query: 1   MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA 60
           ME SGTVEAGAPQQSPF SDSVPTVVTPPIPV+N +T Q QP+IHPPSVLPDLV IPSAA
Sbjct: 1   MEASGTVEAGAPQQSPFRSDSVPTVVTPPIPVQNFHTLQSQPNIHPPSVLPDLVLIPSAA 60

Query: 61  PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY 120
           PAPIPSPNLSD TQIFVYKNHLHEY QKA+IAVPVYQTIDEGSP LPK+RSTV++DEVHY
Sbjct: 61  PAPIPSPNLSDPTQIFVYKNHLHEYAQKARIAVPVYQTIDEGSPGLPKFRSTVLLDEVHY 120

Query: 121 VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLRE 159
           VSPNTFRNRRAAEQDAAR+AFEYISKKTKDDAFLLLRE
Sbjct: 121 VSPNTFRNRRAAEQDAARIAFEYISKKTKDDAFLLLRE 158

The following BLAST results are available for this feature:
BLAST of CSPI03G21790 vs. Swiss-Prot
Match NameE-valueIdentityDescription
DRB1_ARATH1.4e-0943.24Double-stranded RNA-binding protein 1 OS=Arabidopsis thaliana GN=DRB1 PE=1 SV=1[more]
DRB3_ORYSJ9.1e-0938.24Double-stranded RNA-binding protein 3 OS=Oryza sativa subsp. japonica GN=DRB3 PE... [more]
DRB7_ORYSJ1.2e-0838.74Double-stranded RNA-binding protein 7 OS=Oryza sativa subsp. japonica GN=DRB7 PE... [more]
DRB8_ORYSJ3.5e-0837.84Double-stranded RNA-binding protein 8 OS=Oryza sativa subsp. japonica GN=DRB8 PE... [more]
DRB4_ORYSJ2.9e-0738.54Double-stranded RNA-binding protein 4 OS=Oryza sativa subsp. japonica GN=DRB4 PE... [more]
BLAST of CSPI03G21790 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LAZ4_CUCSA9.3e-85100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G345380 PE=4 SV=1[more]
D7TSR3_VITVI8.0e-2051.00Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0006g01440 PE=4 SV=... [more]
A0A067KA91_JATCU1.5e-1843.38Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13421 PE=4 SV=1[more]
A0A0B0MSI8_GOSAR5.7e-1844.96Double-stranded RNA-binding 4 OS=Gossypium arboreum GN=F383_22957 PE=4 SV=1[more]
A0A0D2SVL8_GOSRA9.8e-1843.94Uncharacterized protein OS=Gossypium raimondii GN=B456_008G058500 PE=4 SV=1[more]
BLAST of CSPI03G21790 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G09700.17.9e-1143.24 dsRNA-binding domain-like superfamily protein[more]
BLAST of CSPI03G21790 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202704|gb|KGN57837.1|1.3e-84100.00hypothetical protein Csa_3G345380 [Cucumis sativus][more]
gi|449464150|ref|XP_004149792.1|4.7e-82100.00PREDICTED: uncharacterized protein LOC101213863 isoform X1 [Cucumis sativus][more]
gi|778680845|ref|XP_011651405.1|4.7e-82100.00PREDICTED: double-stranded RNA-binding protein 4 isoform X2 [Cucumis sativus][more]
gi|778680848|ref|XP_011651406.1|4.7e-82100.00PREDICTED: double-stranded RNA-binding protein 3 isoform X3 [Cucumis sativus][more]
gi|659114470|ref|XP_008457067.1|1.7e-7189.24PREDICTED: double-stranded RNA-binding protein 4-like isoform X2 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR014720dsRBD_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003725 double-stranded RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G21790.1CSPI03G21790.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014720Double-stranded RNA-binding domainGENE3DG3DSA:3.30.160.20coord: 78..144
score: 2.4
IPR014720Double-stranded RNA-binding domainPFAMPF00035dsrmcoord: 78..143
score: 1.
IPR014720Double-stranded RNA-binding domainSMARTSM00358DRBM_3coord: 78..145
score: 5.5
IPR014720Double-stranded RNA-binding domainPROFILEPS50137DS_RBDcoord: 77..146
score: 11
NoneNo IPR availablePANTHERPTHR11207RIBONUCLEASE IIIcoord: 2..162
score: 3.0
NoneNo IPR availablePANTHERPTHR11207:SF8SUBFAMILY NOT NAMEDcoord: 2..162
score: 3.0
NoneNo IPR availableunknownSSF54768dsRNA-binding domain-likecoord: 73..144
score: 2.67

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI03G21790Csa3G345380Cucumber (Chinese Long) v2cpicuB120
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI03G21790Bottle gourd (USVL1VR-Ls)cpilsiB210
CSPI03G21790Melon (DHL92) v3.6.1cpimedB240
CSPI03G21790Cucumber (Gy14) v2cgybcpiB110
CSPI03G21790Silver-seed gourdcarcpiB0798
CSPI03G21790Cucumber (Chinese Long) v3cpicucB144
CSPI03G21790Watermelon (97103) v2cpiwmbB224
CSPI03G21790Wax gourdcpiwgoB299
CSPI03G21790Cucumber (Gy14) v1cgycpiB299
CSPI03G21790Cucurbita maxima (Rimu)cmacpiB244
CSPI03G21790Cucurbita maxima (Rimu)cmacpiB458
CSPI03G21790Cucurbita moschata (Rifu)cmocpiB232
CSPI03G21790Cucurbita moschata (Rifu)cmocpiB446
CSPI03G21790Melon (DHL92) v3.5.1cpimeB243
CSPI03G21790Watermelon (Charleston Gray)cpiwcgB240
CSPI03G21790Watermelon (97103) v1cpiwmB245
CSPI03G21790Cucurbita pepo (Zucchini)cpecpiB552
CSPI03G21790Cucurbita pepo (Zucchini)cpecpiB602