Csa3G298060 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G298060
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Mitochondrial Rho GTPase
Location	Chr3 : 16995270 .. 16995652 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTCCACGCAAATGTCAGGATATGGGTATAGAACCTACAATACTCATCAGCACGAAATTGGGTGATTTTAATAACGTATGTCGAAGAATCACATCAGCTATAGAGCATCCTCATTTAAGCATCCCTGAAAATGAGGCAGGCAGAAGCCGCAAGCATTATCACAAGCTCAAAAACCACTCTCTTATGTTTGTTTCAGGTATGTTGATTTATATAGTTTTCCCCTCATTCATATCAACATGAAAAACCTACTTGGTAATAAACATTAACATGTACTGCTATGTATGACAGTTTTTGCTTCATTGGATGGTTGCATAAATGAGTCTGTCATCCCACCGATTACTTGTTTTTCAGAAAGGATGTTTTTAAGTATAAAGAGGTAG

mRNA sequence

ATGACTCCACGCAAATGTCAGGATATGGGTATAGAACCTACAATACTCATCAGCACGAAATTGGGTGATTTTAATAACGTATGTCGAAGAATCACATCAGCTATAGAGCATCCTCATTTAAGCATCCCTGAAAATGAGGCAGGCAGAAGCCGCAAGCATTATCACAAGCTCAAAAACCACTCTCTTATGTTTGTTTCAGTTTTTGCTTCATTGGATGGTTGCATAAATGAGTCTGTCATCCCACCGATTACTTGTTTTTCAGAAAGGATGTTTTTAAGTATAAAGAGGTAG

Coding sequence (CDS)

ATGACTCCACGCAAATGTCAGGATATGGGTATAGAACCTACAATACTCATCAGCACGAAATTGGGTGATTTTAATAACGTATGTCGAAGAATCACATCAGCTATAGAGCATCCTCATTTAAGCATCCCTGAAAATGAGGCAGGCAGAAGCCGCAAGCATTATCACAAGCTCAAAAACCACTCTCTTATGTTTGTTTCAGTTTTTGCTTCATTGGATGGTTGCATAAATGAGTCTGTCATCCCACCGATTACTTGTTTTTCAGAAAGGATGTTTTTAAGTATAAAGAGGTAG

Protein sequence

MTPRKCQDMGIEPTILISTKLGDFNNVCRRITSAIEHPHLSIPENEAGRSRKHYHKLKNHSLMFVSVFASLDGCINESVIPPITCFSERMFLSIKR*

Homology

[Close]

BLAST of Csa3G298060 vs. Swiss-Prot
Match: MIRO1_ARATH (Mitochondrial Rho GTPase 1 OS=Arabidopsis thaliana GN=MIRO1 PE=1 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-18
Identity = 44/67 (65.67%), Postives = 53/67 (79.10%), Query Frame = 1


Query: 4   RKCQDMGIEPTILISTKLGDFNNVCRRITSAIEHPHLSIPENEAGRSRKHYHKLKNHSLM 63
           R  QDMGIEP + IS+KLGDFNN+ R+I +A +HPHLSIPE EAG+SRKHY++L N SLM
Sbjct: 562 RMTQDMGIEPPVSISSKLGDFNNLFRKILTAAQHPHLSIPETEAGKSRKHYNRLINRSLM 621

Query: 64  FVSVFAS 71
            VS+ A+
Sbjct: 622 AVSIGAA 628

[Close]

BLAST of Csa3G298060 vs. Swiss-Prot
Match: MIRO2_ARATH (Mitochondrial Rho GTPase 2 OS=Arabidopsis thaliana GN=MIRO2 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 6.4e-10
Identity = 30/64 (46.88%), Postives = 43/64 (67.19%), Query Frame = 1


Query: 4   RKCQDMGIEPTILISTKLGDFNNVCRRITSAIEHPHLSIPENEAGRSRKHYHKLKNHSLM 63
           R C ++GI+  + +S KLG+ N++  RI S  E+PH+SIPE E+GR  ++  +L N SL+
Sbjct: 559 RVCMELGIDIPVSLSMKLGEPNSLFSRIVSTAENPHMSIPETESGRRSRNIRQLVNSSLL 618

Query: 64  FVSV 68
           FVSV
Sbjct: 619 FVSV 622

[Close]

BLAST of Csa3G298060 vs. Swiss-Prot
Match: MIRO3_ARATH (Mitochondrial Rho GTPase 3 OS=Arabidopsis thaliana GN=MIRO3 PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-08
Identity = 33/64 (51.56%), Postives = 43/64 (67.19%), Query Frame = 1


Query: 4   RKCQDMGIEPTILISTKLGDFNNVCRRITSAIEHPHLSIPENEAGRSRKHYHKLKNHSLM 63
           R  QD+GI+  I IS+KLGD +N+ R+I +A E+PHL+IPE E+   +K   KL N SLM
Sbjct: 566 RVTQDIGIDAPIPISSKLGDVSNLFRKILTAAENPHLNIPEIES--KKKRSCKLNNRSLM 625

Query: 64  FVSV 68
            VS+
Sbjct: 626 AVSI 627

[Close]

BLAST of Csa3G298060 vs. TrEMBL
Match: A0A0A0LAS5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298060 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 1.1e-48
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1


Query: 1  MTPRKCQDMGIEPTILISTKLGDFNNVCRRITSAIEHPHLSIPENEAGRSRKHYHKLKNH 60
          MTPRKCQDMGIEPTILISTKLGDFNNVCRRITSAIEHPHLSIPENEAGRSRKHYHKLKNH
Sbjct: 1  MTPRKCQDMGIEPTILISTKLGDFNNVCRRITSAIEHPHLSIPENEAGRSRKHYHKLKNH 60

Query: 61 SLMFVSVFASLDGCINESVIPPITCFSERMFLSIKR 97
          SLMFVSVFASLDGCINESVIPPITCFSERMFLSIKR
Sbjct: 61 SLMFVSVFASLDGCINESVIPPITCFSERMFLSIKR 96

[Close]

BLAST of Csa3G298060 vs. TrEMBL
Match: A0A0A0LIM9_CUCSA (Mitochondrial Rho GTPase OS=Cucumis sativus GN=Csa_2G021700 PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.1e-21
Identity = 56/68 (82.35%), Postives = 58/68 (85.29%), Query Frame = 1


Query: 4   RKCQDMGIEPTILISTKLGDFNNVCRRITSAIEHPHLSIPENEAGRSRKHYHKLKNHSLM 63
           R  QDMGIEP I ISTKLGDFNNV RRITSA EHPHLSIPE EAGRSRKHYHKL N SLM
Sbjct: 561 RVSQDMGIEPPIPISTKLGDFNNVFRRITSAAEHPHLSIPETEAGRSRKHYHKLINRSLM 620

Query: 64  FVSVFASL 72
           FVSV A++
Sbjct: 621 FVSVGAAV 628

[Close]

BLAST of Csa3G298060 vs. TrEMBL
Match: A6YTD0_CUCME (Mitochondrial Rho GTPase OS=Cucumis melo subsp. melo PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.1e-21
Identity = 56/68 (82.35%), Postives = 58/68 (85.29%), Query Frame = 1


Query: 4   RKCQDMGIEPTILISTKLGDFNNVCRRITSAIEHPHLSIPENEAGRSRKHYHKLKNHSLM 63
           R  QDMGIEP I ISTKLGDFNNV RRITSA EHPHLSIPE EAGRSRKHYHKL N SLM
Sbjct: 561 RVSQDMGIEPPIPISTKLGDFNNVFRRITSAAEHPHLSIPETEAGRSRKHYHKLINRSLM 620

Query: 64  FVSVFASL 72
           FVSV A++
Sbjct: 621 FVSVGAAV 628

[Close]

BLAST of Csa3G298060 vs. TrEMBL
Match: W9T1N4_9ROSA (Mitochondrial Rho GTPase OS=Morus notabilis GN=L484_000800 PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.6e-18
Identity = 49/68 (72.06%), Postives = 55/68 (80.88%), Query Frame = 1


Query: 4   RKCQDMGIEPTILISTKLGDFNNVCRRITSAIEHPHLSIPENEAGRSRKHYHKLKNHSLM 63
           R  QDMG+E  + ISTKLGDFNNV R+I SA EHPHLSIPE EAGRSRK YH+L N SLM
Sbjct: 561 RVSQDMGVEAPVSISTKLGDFNNVFRKIISAAEHPHLSIPETEAGRSRKQYHRLINRSLM 620

Query: 64  FVSVFASL 72
           FVSV A++
Sbjct: 621 FVSVGAAV 628

[Close]

BLAST of Csa3G298060 vs. TrEMBL
Match: B9I7W3_POPTR (Mitochondrial Rho GTPase OS=Populus trichocarpa GN=POPTR_0013s02400g PE=3 SV=2)

HSP 1 Score: 98.2 bits (243), Expect = 5.8e-18
Identity = 53/92 (57.61%), Postives = 62/92 (67.39%), Query Frame = 1


Query: 4   RKCQDMGIEPTILISTKLGDFNNVCRRITSAIEHPHLSIPENEAGRSRKHYHKLKNHSLM 63
           R  QDMGIE  I IS+K+GD NNV RRI +A EHPHLSIPE EAGRSRK Y++L N SLM
Sbjct: 565 RVSQDMGIEAPIPISSKMGDTNNVFRRIVTAAEHPHLSIPETEAGRSRKQYNRLVNRSLM 624

Query: 64  FVSVFASLDGCINESVIPPITCFSERMFLSIK 96
           FVS   S  G    S +P + C  E ++L  K
Sbjct: 625 FVSGIWSYGGHCWASSVPSLCCKKELIWLKNK 656

[Close]

BLAST of Csa3G298060 vs. TAIR10
Match: AT5G27540.1 (AT5G27540.1 MIRO-related GTP-ase 1)

HSP 1 Score: 93.6 bits (231), Expect = 7.2e-20
Identity = 44/67 (65.67%), Postives = 53/67 (79.10%), Query Frame = 1


Query: 4   RKCQDMGIEPTILISTKLGDFNNVCRRITSAIEHPHLSIPENEAGRSRKHYHKLKNHSLM 63
           R  QDMGIEP + IS+KLGDFNN+ R+I +A +HPHLSIPE EAG+SRKHY++L N SLM
Sbjct: 562 RMTQDMGIEPPVSISSKLGDFNNLFRKILTAAQHPHLSIPETEAGKSRKHYNRLINRSLM 621

Query: 64  FVSVFAS 71
            VS+ A+
Sbjct: 622 AVSIGAA 628

[Close]

BLAST of Csa3G298060 vs. TAIR10
Match: AT3G63150.1 (AT3G63150.1 MIRO-related GTP-ase 2)

HSP 1 Score: 64.7 bits (156), Expect = 3.6e-11
Identity = 30/64 (46.88%), Postives = 43/64 (67.19%), Query Frame = 1


Query: 4   RKCQDMGIEPTILISTKLGDFNNVCRRITSAIEHPHLSIPENEAGRSRKHYHKLKNHSLM 63
           R C ++GI+  + +S KLG+ N++  RI S  E+PH+SIPE E+GR  ++  +L N SL+
Sbjct: 559 RVCMELGIDIPVSLSMKLGEPNSLFSRIVSTAENPHMSIPETESGRRSRNIRQLVNSSLL 618

Query: 64  FVSV 68
           FVSV
Sbjct: 619 FVSV 622

[Close]

BLAST of Csa3G298060 vs. TAIR10
Match: AT3G05310.1 (AT3G05310.1 MIRO-related GTP-ase 3)

HSP 1 Score: 60.5 bits (145), Expect = 6.8e-10
Identity = 33/64 (51.56%), Postives = 43/64 (67.19%), Query Frame = 1


Query: 4   RKCQDMGIEPTILISTKLGDFNNVCRRITSAIEHPHLSIPENEAGRSRKHYHKLKNHSLM 63
           R  QD+GI+  I IS+KLGD +N+ R+I +A E+PHL+IPE E+   +K   KL N SLM
Sbjct: 566 RVTQDIGIDAPIPISSKLGDVSNLFRKILTAAENPHLNIPEIES--KKKRSCKLNNRSLM 625

Query: 64  FVSV 68
            VS+
Sbjct: 626 AVSI 627

[Close]

BLAST of Csa3G298060 vs. NCBI nr
Match: gi|700202644|gb|KGN57777.1| (hypothetical protein Csa_3G298060 [Cucumis sativus])

HSP 1 Score: 200.3 bits (508), Expect = 1.6e-48
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1


Query: 1  MTPRKCQDMGIEPTILISTKLGDFNNVCRRITSAIEHPHLSIPENEAGRSRKHYHKLKNH 60
          MTPRKCQDMGIEPTILISTKLGDFNNVCRRITSAIEHPHLSIPENEAGRSRKHYHKLKNH
Sbjct: 1  MTPRKCQDMGIEPTILISTKLGDFNNVCRRITSAIEHPHLSIPENEAGRSRKHYHKLKNH 60

Query: 61 SLMFVSVFASLDGCINESVIPPITCFSERMFLSIKR 97
          SLMFVSVFASLDGCINESVIPPITCFSERMFLSIKR
Sbjct: 61 SLMFVSVFASLDGCINESVIPPITCFSERMFLSIKR 96

[Close]

BLAST of Csa3G298060 vs. NCBI nr
Match: gi|659070369|ref|XP_008454749.1| (PREDICTED: mitochondrial Rho GTPase 1-like [Cucumis melo])

HSP 1 Score: 110.5 bits (275), Expect = 1.6e-21
Identity = 56/68 (82.35%), Postives = 58/68 (85.29%), Query Frame = 1


Query: 4   RKCQDMGIEPTILISTKLGDFNNVCRRITSAIEHPHLSIPENEAGRSRKHYHKLKNHSLM 63
           R  QDMGIEP I ISTKLGDFNNV RRITSA EHPHLSIPE EAGRSRKHYHKL N SLM
Sbjct: 561 RVSQDMGIEPPIPISTKLGDFNNVFRRITSAAEHPHLSIPETEAGRSRKHYHKLINRSLM 620

Query: 64  FVSVFASL 72
           FVSV A++
Sbjct: 621 FVSVGAAV 628

[Close]

BLAST of Csa3G298060 vs. NCBI nr
Match: gi|778666790|ref|XP_004139182.2| (PREDICTED: mitochondrial Rho GTPase 1-like [Cucumis sativus])

HSP 1 Score: 110.5 bits (275), Expect = 1.6e-21
Identity = 56/68 (82.35%), Postives = 58/68 (85.29%), Query Frame = 1


Query: 4   RKCQDMGIEPTILISTKLGDFNNVCRRITSAIEHPHLSIPENEAGRSRKHYHKLKNHSLM 63
           R  QDMGIEP I ISTKLGDFNNV RRITSA EHPHLSIPE EAGRSRKHYHKL N SLM
Sbjct: 561 RVSQDMGIEPPIPISTKLGDFNNVFRRITSAAEHPHLSIPETEAGRSRKHYHKLINRSLM 620

Query: 64  FVSVFASL 72
           FVSV A++
Sbjct: 621 FVSVGAAV 628

[Close]

BLAST of Csa3G298060 vs. NCBI nr
Match: gi|703080944|ref|XP_010091557.1| (Mitochondrial Rho GTPase 1 [Morus notabilis])

HSP 1 Score: 99.4 bits (246), Expect = 3.7e-18
Identity = 49/68 (72.06%), Postives = 55/68 (80.88%), Query Frame = 1


Query: 4   RKCQDMGIEPTILISTKLGDFNNVCRRITSAIEHPHLSIPENEAGRSRKHYHKLKNHSLM 63
           R  QDMG+E  + ISTKLGDFNNV R+I SA EHPHLSIPE EAGRSRK YH+L N SLM
Sbjct: 561 RVSQDMGVEAPVSISTKLGDFNNVFRKIISAAEHPHLSIPETEAGRSRKQYHRLINRSLM 620

Query: 64  FVSVFASL 72
           FVSV A++
Sbjct: 621 FVSVGAAV 628

[Close]

BLAST of Csa3G298060 vs. NCBI nr
Match: gi|702268333|ref|XP_010043089.1| (PREDICTED: mitochondrial Rho GTPase 1 [Eucalyptus grandis])

HSP 1 Score: 98.2 bits (243), Expect = 8.3e-18
Identity = 49/68 (72.06%), Postives = 55/68 (80.88%), Query Frame = 1


Query: 4   RKCQDMGIEPTILISTKLGDFNNVCRRITSAIEHPHLSIPENEAGRSRKHYHKLKNHSLM 63
           R  QDMGIE  I ISTKLGDF+N+ RRI +A EHPHLSIPE EAGRSRK YH+L N SLM
Sbjct: 561 RVSQDMGIEAPIPISTKLGDFSNIFRRIVNAAEHPHLSIPETEAGRSRKQYHRLVNRSLM 620

Query: 64  FVSVFASL 72
           FVSV A++
Sbjct: 621 FVSVGAAV 628

The following BLAST results are available for this feature:

BLAST of Csa3G298060 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MIRO1_ARATH	1.3e-18	65.67	Mitochondrial Rho GTPase 1 OS=Arabidopsis thaliana GN=MIRO1 PE=1 SV=1	[more]
MIRO2_ARATH	6.4e-10	46.88	Mitochondrial Rho GTPase 2 OS=Arabidopsis thaliana GN=MIRO2 PE=2 SV=1	[more]
MIRO3_ARATH	1.2e-08	51.56	Mitochondrial Rho GTPase 3 OS=Arabidopsis thaliana GN=MIRO3 PE=2 SV=1	[more]

BLAST of Csa3G298060 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAS5_CUCSA	1.1e-48	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298060 PE=4 SV=1	[more]
A0A0A0LIM9_CUCSA	1.1e-21	82.35	Mitochondrial Rho GTPase OS=Cucumis sativus GN=Csa_2G021700 PE=3 SV=1	[more]
A6YTD0_CUCME	1.1e-21	82.35	Mitochondrial Rho GTPase OS=Cucumis melo subsp. melo PE=3 SV=1	[more]
W9T1N4_9ROSA	2.6e-18	72.06	Mitochondrial Rho GTPase OS=Morus notabilis GN=L484_000800 PE=3 SV=1	[more]
B9I7W3_POPTR	5.8e-18	57.61	Mitochondrial Rho GTPase OS=Populus trichocarpa GN=POPTR_0013s02400g PE=3 SV=2	[more]

BLAST of Csa3G298060 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G27540.1	7.2e-20	65.67	MIRO-related GTP-ase 1	[more]
AT3G63150.1	3.6e-11	46.88	MIRO-related GTP-ase 2	[more]
AT3G05310.1	6.8e-10	51.56	MIRO-related GTP-ase 3	[more]

BLAST of Csa3G298060 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202644\|gb\|KGN57777.1\|	1.6e-48	100.00	hypothetical protein Csa_3G298060 [Cucumis sativus]	[more]
gi\|659070369\|ref\|XP_008454749.1\|	1.6e-21	82.35	PREDICTED: mitochondrial Rho GTPase 1-like [Cucumis melo]	[more]
gi\|778666790\|ref\|XP_004139182.2\|	1.6e-21	82.35	PREDICTED: mitochondrial Rho GTPase 1-like [Cucumis sativus]	[more]
gi\|703080944\|ref\|XP_010091557.1\|	3.7e-18	72.06	Mitochondrial Rho GTPase 1 [Morus notabilis]	[more]
gi\|702268333\|ref\|XP_010043089.1\|	8.3e-18	72.06	PREDICTED: mitochondrial Rho GTPase 1 [Eucalyptus grandis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
biological_process	GO:0007005	mitochondrion organization
biological_process	GO:0015031	protein transport
biological_process	GO:0007264	small GTPase mediated signal transduction
cellular_component	GO:0031307	integral component of mitochondrial outer membrane
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G298060.1	Csa3G298060.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa3G298060	CSPI03G21070	Wild cucumber (PI 183967)	cpicuB120
Csa3G298060	CsGy3G020540	Cucumber (Gy14) v2	cgybcuB109

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G298060	Cucurbita maxima (Rimu)	cmacuB242
Csa3G298060	Cucurbita maxima (Rimu)	cmacuB455
Csa3G298060	Cucurbita moschata (Rifu)	cmocuB229
Csa3G298060	Cucurbita moschata (Rifu)	cmocuB442
Csa3G298060	Watermelon (Charleston Gray)	cuwcgB226
Csa3G298060	Melon (DHL92) v3.5.1	cumeB246
Csa3G298060	Watermelon (Charleston Gray)	cuwcgB233
Csa3G298060	Watermelon (97103) v1	cuwmB239
Csa3G298060	Watermelon (97103) v1	cuwmB245
Csa3G298060	Cucurbita pepo (Zucchini)	cpecuB547
Csa3G298060	Cucurbita pepo (Zucchini)	cpecuB600
Csa3G298060	Bottle gourd (USVL1VR-Ls)	culsiB206
Csa3G298060	Bottle gourd (USVL1VR-Ls)	culsiB212
Csa3G298060	Melon (DHL92) v3.6.1	cumedB239
Csa3G298060	Silver-seed gourd	carcuB0513
Csa3G298060	Silver-seed gourd	carcuB0780
Csa3G298060	Watermelon (97103) v2	cuwmbB209
Csa3G298060	Watermelon (97103) v2	cuwmbB218
Csa3G298060	Wax gourd	cuwgoB271
Csa3G298060	Wax gourd	cuwgoB300