CsGy3G020540 (gene) Cucumber (Gy14) v2

NameCsGy3G020540
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionMitochondrial Rho GTPase
LocationChr3 : 17451826 .. 17452250 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGCGAACATATCTGCTACACTCGAACGGCTACGGACGAATGACTCCACGCAAATGTCAGGATATGGGTATAGAACCTACAATACTCATCAGCACGAAATTGGGTGATTTTAATAACGTATGTCGAAGAATCACATCAGCTATAGAGCATCCTCATTTAAGCATCCCTGAAAATGAGGCAGGCAGAAGCCGCAAGCATTATCACAAGCTCAAAAACCACTCTCTTATGTTTGTTTCAGGTATGTTGATTTATATAGTTTTCCCCTCATTCATATCAACATGAAAAACCTACTTGGTAATAAACATTAACATGTACTGCTATGTATGACAGTTTTTGCTTCATTGGATGGTTGCATAAATGAGTCTGTCATCCCACCGATTACTTGTTTTTCAGAAAGGATGTTTTTAAGTATAAAGAGGTAG

mRNA sequence

ATGAAGCGAACATATCTGCTACACTCGAACGGCTACGGACGAATGACTCCACGCAAATGTCAGGATATGGGTATAGAACCTACAATACTCATCAGCACGAAATTGGGTGATTTTAATAACGTATGTCGAAGAATCACATCAGCTATAGAGCATCCTCATTTAAGCATCCCTGAAAATGAGGCAGGCAGAAGCCGCAAGCATTATCACAAGCTCAAAAACCACTCTCTTATGTTTGTTTCAGTTTTTGCTTCATTGGATGGTTGCATAAATGAGTCTGTCATCCCACCGATTACTTGTTTTTCAGAAAGGATGTTTTTAAGTATAAAGAGGTAG

Coding sequence (CDS)

ATGAAGCGAACATATCTGCTACACTCGAACGGCTACGGACGAATGACTCCACGCAAATGTCAGGATATGGGTATAGAACCTACAATACTCATCAGCACGAAATTGGGTGATTTTAATAACGTATGTCGAAGAATCACATCAGCTATAGAGCATCCTCATTTAAGCATCCCTGAAAATGAGGCAGGCAGAAGCCGCAAGCATTATCACAAGCTCAAAAACCACTCTCTTATGTTTGTTTCAGTTTTTGCTTCATTGGATGGTTGCATAAATGAGTCTGTCATCCCACCGATTACTTGTTTTTCAGAAAGGATGTTTTTAAGTATAAAGAGGTAG

Protein sequence

MKRTYLLHSNGYGRMTPRKCQDMGIEPTILISTKLGDFNNVCRRITSAIEHPHLSIPENEAGRSRKHYHKLKNHSLMFVSVFASLDGCINESVIPPITCFSERMFLSIKR
BLAST of CsGy3G020540 vs. NCBI nr
Match: KGN57777.1 (hypothetical protein Csa_3G298060 [Cucumis sativus])

HSP 1 Score: 202.6 bits (514), Expect = 6.9e-49
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0

Query: 15  MTPRKCQDMGIEPTILISTKLGDFNNVCRRITSAIEHPHLSIPENEAGRSRKHYHKLKNH 74
           MTPRKCQDMGIEPTILISTKLGDFNNVCRRITSAIEHPHLSIPENEAGRSRKHYHKLKNH
Sbjct: 1   MTPRKCQDMGIEPTILISTKLGDFNNVCRRITSAIEHPHLSIPENEAGRSRKHYHKLKNH 60

Query: 75  SLMFVSVFASLDGCINESVIPPITCFSERMFLSIKR 111
           SLMFVSVFASLDGCINESVIPPITCFSERMFLSIKR
Sbjct: 61  SLMFVSVFASLDGCINESVIPPITCFSERMFLSIKR 96

BLAST of CsGy3G020540 vs. NCBI nr
Match: XP_004139182.2 (PREDICTED: mitochondrial Rho GTPase 1-like [Cucumis sativus] >KGN60899.1 hypothetical protein Csa_2G021700 [Cucumis sativus])

HSP 1 Score: 111.7 bits (278), Expect = 1.6e-21
Identity = 56/68 (82.35%), Postives = 58/68 (85.29%), Query Frame = 0

Query: 18  RKCQDMGIEPTILISTKLGDFNNVCRRITSAIEHPHLSIPENEAGRSRKHYHKLKNHSLM 77
           R  QDMGIEP I ISTKLGDFNNV RRITSA EHPHLSIPE EAGRSRKHYHKL N SLM
Sbjct: 561 RVSQDMGIEPPIPISTKLGDFNNVFRRITSAAEHPHLSIPETEAGRSRKHYHKLINRSLM 620

Query: 78  FVSVFASL 86
           FVSV A++
Sbjct: 621 FVSVGAAV 628

BLAST of CsGy3G020540 vs. NCBI nr
Match: XP_008454749.1 (PREDICTED: mitochondrial Rho GTPase 1-like [Cucumis melo] >ABR67417.1 ATP/GTP/Ca++ binding protein [Cucumis melo subsp. melo])

HSP 1 Score: 111.7 bits (278), Expect = 1.6e-21
Identity = 56/68 (82.35%), Postives = 58/68 (85.29%), Query Frame = 0

Query: 18  RKCQDMGIEPTILISTKLGDFNNVCRRITSAIEHPHLSIPENEAGRSRKHYHKLKNHSLM 77
           R  QDMGIEP I ISTKLGDFNNV RRITSA EHPHLSIPE EAGRSRKHYHKL N SLM
Sbjct: 561 RVSQDMGIEPPIPISTKLGDFNNVFRRITSAAEHPHLSIPETEAGRSRKHYHKLINRSLM 620

Query: 78  FVSVFASL 86
           FVSV A++
Sbjct: 621 FVSVGAAV 628

BLAST of CsGy3G020540 vs. NCBI nr
Match: XP_022946756.1 (mitochondrial Rho GTPase 1-like [Cucurbita moschata])

HSP 1 Score: 105.5 bits (262), Expect = 1.1e-19
Identity = 53/67 (79.10%), Postives = 55/67 (82.09%), Query Frame = 0

Query: 18  RKCQDMGIEPTILISTKLGDFNNVCRRITSAIEHPHLSIPENEAGRSRKHYHKLKNHSLM 77
           R  QDMGIE  I ISTKLGDFNNV RRI SA EHPHLSIPE EAGR+RKHYHKL N SLM
Sbjct: 561 RVSQDMGIEAPIPISTKLGDFNNVFRRIASAAEHPHLSIPETEAGRTRKHYHKLINRSLM 620

Query: 78  FVSVFAS 85
           FVSV A+
Sbjct: 621 FVSVGAA 627

BLAST of CsGy3G020540 vs. NCBI nr
Match: XP_022999265.1 (mitochondrial Rho GTPase 1-like [Cucurbita maxima])

HSP 1 Score: 105.5 bits (262), Expect = 1.1e-19
Identity = 53/67 (79.10%), Postives = 55/67 (82.09%), Query Frame = 0

Query: 18  RKCQDMGIEPTILISTKLGDFNNVCRRITSAIEHPHLSIPENEAGRSRKHYHKLKNHSLM 77
           R  QDMGIE  I ISTKLGDFNNV RRI SA EHPHLSIPE EAGR+RKHYHKL N SLM
Sbjct: 561 RVSQDMGIEAPIPISTKLGDFNNVFRRIASAAEHPHLSIPETEAGRTRKHYHKLINRSLM 620

Query: 78  FVSVFAS 85
           FVSV A+
Sbjct: 621 FVSVGAA 627

BLAST of CsGy3G020540 vs. TAIR10
Match: AT5G27540.1 (MIRO-related GTP-ase 1)

HSP 1 Score: 95.1 bits (235), Expect = 2.8e-20
Identity = 44/67 (65.67%), Postives = 55/67 (82.09%), Query Frame = 0

Query: 18  RKCQDMGIEPTILISTKLGDFNNVCRRITSAIEHPHLSIPENEAGRSRKHYHKLKNHSLM 77
           R  QDMGIEP + IS+KLGDFNN+ R+I +A +HPHLSIPE EAG+SRKHY++L N SLM
Sbjct: 562 RMTQDMGIEPPVSISSKLGDFNNLFRKILTAAQHPHLSIPETEAGKSRKHYNRLINRSLM 621

Query: 78  FVSVFAS 85
            VS+ A+
Sbjct: 622 AVSIGAA 628

BLAST of CsGy3G020540 vs. TAIR10
Match: AT3G63150.1 (MIRO-related GTP-ase 2)

HSP 1 Score: 65.9 bits (159), Expect = 1.8e-11
Identity = 30/64 (46.88%), Postives = 45/64 (70.31%), Query Frame = 0

Query: 18  RKCQDMGIEPTILISTKLGDFNNVCRRITSAIEHPHLSIPENEAGRSRKHYHKLKNHSLM 77
           R C ++GI+  + +S KLG+ N++  RI S  E+PH+SIPE E+GR  ++  +L N SL+
Sbjct: 559 RVCMELGIDIPVSLSMKLGEPNSLFSRIVSTAENPHMSIPETESGRRSRNIRQLVNSSLL 618

Query: 78  FVSV 82
           FVSV
Sbjct: 619 FVSV 622

BLAST of CsGy3G020540 vs. TAIR10
Match: AT3G05310.1 (MIRO-related GTP-ase 3)

HSP 1 Score: 61.6 bits (148), Expect = 3.5e-10
Identity = 33/64 (51.56%), Postives = 45/64 (70.31%), Query Frame = 0

Query: 18  RKCQDMGIEPTILISTKLGDFNNVCRRITSAIEHPHLSIPENEAGRSRKHYHKLKNHSLM 77
           R  QD+GI+  I IS+KLGD +N+ R+I +A E+PHL+IPE E+   +K   KL N SLM
Sbjct: 566 RVTQDIGIDAPIPISSKLGDVSNLFRKILTAAENPHLNIPEIES--KKKRSCKLNNRSLM 625

Query: 78  FVSV 82
            VS+
Sbjct: 626 AVSI 627

BLAST of CsGy3G020540 vs. Swiss-Prot
Match: sp|Q8RXF8|MIRO1_ARATH (Mitochondrial Rho GTPase 1 OS=Arabidopsis thaliana OX=3702 GN=MIRO1 PE=1 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 5.1e-19
Identity = 44/67 (65.67%), Postives = 55/67 (82.09%), Query Frame = 0

Query: 18  RKCQDMGIEPTILISTKLGDFNNVCRRITSAIEHPHLSIPENEAGRSRKHYHKLKNHSLM 77
           R  QDMGIEP + IS+KLGDFNN+ R+I +A +HPHLSIPE EAG+SRKHY++L N SLM
Sbjct: 562 RMTQDMGIEPPVSISSKLGDFNNLFRKILTAAQHPHLSIPETEAGKSRKHYNRLINRSLM 621

Query: 78  FVSVFAS 85
            VS+ A+
Sbjct: 622 AVSIGAA 628

BLAST of CsGy3G020540 vs. Swiss-Prot
Match: sp|F4J0W4|MIRO2_ARATH (Mitochondrial Rho GTPase 2 OS=Arabidopsis thaliana OX=3702 GN=MIRO2 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.3e-10
Identity = 30/64 (46.88%), Postives = 45/64 (70.31%), Query Frame = 0

Query: 18  RKCQDMGIEPTILISTKLGDFNNVCRRITSAIEHPHLSIPENEAGRSRKHYHKLKNHSLM 77
           R C ++GI+  + +S KLG+ N++  RI S  E+PH+SIPE E+GR  ++  +L N SL+
Sbjct: 559 RVCMELGIDIPVSLSMKLGEPNSLFSRIVSTAENPHMSIPETESGRRSRNIRQLVNSSLL 618

Query: 78  FVSV 82
           FVSV
Sbjct: 619 FVSV 622

BLAST of CsGy3G020540 vs. Swiss-Prot
Match: sp|Q9MA88|MIRO3_ARATH (Mitochondrial Rho GTPase 3 OS=Arabidopsis thaliana OX=3702 GN=MIRO3 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 6.2e-09
Identity = 33/64 (51.56%), Postives = 45/64 (70.31%), Query Frame = 0

Query: 18  RKCQDMGIEPTILISTKLGDFNNVCRRITSAIEHPHLSIPENEAGRSRKHYHKLKNHSLM 77
           R  QD+GI+  I IS+KLGD +N+ R+I +A E+PHL+IPE E+   +K   KL N SLM
Sbjct: 566 RVTQDIGIDAPIPISSKLGDVSNLFRKILTAAENPHLNIPEIES--KKKRSCKLNNRSLM 625

Query: 78  FVSV 82
            VS+
Sbjct: 626 AVSI 627

BLAST of CsGy3G020540 vs. TrEMBL
Match: tr|A0A0A0LAS5|A0A0A0LAS5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298060 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 4.6e-49
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0

Query: 15  MTPRKCQDMGIEPTILISTKLGDFNNVCRRITSAIEHPHLSIPENEAGRSRKHYHKLKNH 74
           MTPRKCQDMGIEPTILISTKLGDFNNVCRRITSAIEHPHLSIPENEAGRSRKHYHKLKNH
Sbjct: 1   MTPRKCQDMGIEPTILISTKLGDFNNVCRRITSAIEHPHLSIPENEAGRSRKHYHKLKNH 60

Query: 75  SLMFVSVFASLDGCINESVIPPITCFSERMFLSIKR 111
           SLMFVSVFASLDGCINESVIPPITCFSERMFLSIKR
Sbjct: 61  SLMFVSVFASLDGCINESVIPPITCFSERMFLSIKR 96

BLAST of CsGy3G020540 vs. TrEMBL
Match: tr|A0A1S3BYW1|A0A1S3BYW1_CUCME (Mitochondrial Rho GTPase OS=Cucumis melo OX=3656 GN=LOC103495076 PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.1e-21
Identity = 56/68 (82.35%), Postives = 58/68 (85.29%), Query Frame = 0

Query: 18  RKCQDMGIEPTILISTKLGDFNNVCRRITSAIEHPHLSIPENEAGRSRKHYHKLKNHSLM 77
           R  QDMGIEP I ISTKLGDFNNV RRITSA EHPHLSIPE EAGRSRKHYHKL N SLM
Sbjct: 561 RVSQDMGIEPPIPISTKLGDFNNVFRRITSAAEHPHLSIPETEAGRSRKHYHKLINRSLM 620

Query: 78  FVSVFASL 86
           FVSV A++
Sbjct: 621 FVSVGAAV 628

BLAST of CsGy3G020540 vs. TrEMBL
Match: tr|A6YTD0|A6YTD0_CUCME (Mitochondrial Rho GTPase OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.1e-21
Identity = 56/68 (82.35%), Postives = 58/68 (85.29%), Query Frame = 0

Query: 18  RKCQDMGIEPTILISTKLGDFNNVCRRITSAIEHPHLSIPENEAGRSRKHYHKLKNHSLM 77
           R  QDMGIEP I ISTKLGDFNNV RRITSA EHPHLSIPE EAGRSRKHYHKL N SLM
Sbjct: 561 RVSQDMGIEPPIPISTKLGDFNNVFRRITSAAEHPHLSIPETEAGRSRKHYHKLINRSLM 620

Query: 78  FVSVFASL 86
           FVSV A++
Sbjct: 621 FVSVGAAV 628

BLAST of CsGy3G020540 vs. TrEMBL
Match: tr|A0A0A0LIM9|A0A0A0LIM9_CUCSA (Mitochondrial Rho GTPase OS=Cucumis sativus OX=3659 GN=Csa_2G021700 PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.1e-21
Identity = 56/68 (82.35%), Postives = 58/68 (85.29%), Query Frame = 0

Query: 18  RKCQDMGIEPTILISTKLGDFNNVCRRITSAIEHPHLSIPENEAGRSRKHYHKLKNHSLM 77
           R  QDMGIEP I ISTKLGDFNNV RRITSA EHPHLSIPE EAGRSRKHYHKL N SLM
Sbjct: 561 RVSQDMGIEPPIPISTKLGDFNNVFRRITSAAEHPHLSIPETEAGRSRKHYHKLINRSLM 620

Query: 78  FVSVFASL 86
           FVSV A++
Sbjct: 621 FVSVGAAV 628

BLAST of CsGy3G020540 vs. TrEMBL
Match: tr|A0A1Q3B5G5|A0A1Q3B5G5_CEPFO (Mitochondrial Rho GTPase OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_06689 PE=3 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 8.4e-19
Identity = 52/68 (76.47%), Postives = 55/68 (80.88%), Query Frame = 0

Query: 18  RKCQDMGIEPTILISTKLGDFNNVCRRITSAIEHPHLSIPENEAGRSRKHYHKLKNHSLM 77
           R  QDMGIE  I ISTKLGDFNNV RRI SA EHPHLSIPE EAGRSRK YH+L N SLM
Sbjct: 561 RVSQDMGIEAPIPISTKLGDFNNVFRRIISAAEHPHLSIPETEAGRSRKQYHRLINRSLM 620

Query: 78  FVSVFASL 86
           FVSV A++
Sbjct: 621 FVSVGAAV 628

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN57777.16.9e-49100.00hypothetical protein Csa_3G298060 [Cucumis sativus][more]
XP_004139182.21.6e-2182.35PREDICTED: mitochondrial Rho GTPase 1-like [Cucumis sativus] >KGN60899.1 hypothe... [more]
XP_008454749.11.6e-2182.35PREDICTED: mitochondrial Rho GTPase 1-like [Cucumis melo] >ABR67417.1 ATP/GTP/Ca... [more]
XP_022946756.11.1e-1979.10mitochondrial Rho GTPase 1-like [Cucurbita moschata][more]
XP_022999265.11.1e-1979.10mitochondrial Rho GTPase 1-like [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
AT5G27540.12.8e-2065.67MIRO-related GTP-ase 1[more]
AT3G63150.11.8e-1146.88MIRO-related GTP-ase 2[more]
AT3G05310.13.5e-1051.56MIRO-related GTP-ase 3[more]
Match NameE-valueIdentityDescription
sp|Q8RXF8|MIRO1_ARATH5.1e-1965.67Mitochondrial Rho GTPase 1 OS=Arabidopsis thaliana OX=3702 GN=MIRO1 PE=1 SV=1[more]
sp|F4J0W4|MIRO2_ARATH3.3e-1046.88Mitochondrial Rho GTPase 2 OS=Arabidopsis thaliana OX=3702 GN=MIRO2 PE=2 SV=1[more]
sp|Q9MA88|MIRO3_ARATH6.2e-0951.56Mitochondrial Rho GTPase 3 OS=Arabidopsis thaliana OX=3702 GN=MIRO3 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
tr|A0A0A0LAS5|A0A0A0LAS5_CUCSA4.6e-49100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298060 PE=4 SV=1[more]
tr|A0A1S3BYW1|A0A1S3BYW1_CUCME1.1e-2182.35Mitochondrial Rho GTPase OS=Cucumis melo OX=3656 GN=LOC103495076 PE=3 SV=1[more]
tr|A6YTD0|A6YTD0_CUCME1.1e-2182.35Mitochondrial Rho GTPase OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1[more]
tr|A0A0A0LIM9|A0A0A0LIM9_CUCSA1.1e-2182.35Mitochondrial Rho GTPase OS=Cucumis sativus OX=3659 GN=Csa_2G021700 PE=3 SV=1[more]
tr|A0A1Q3B5G5|A0A1Q3B5G5_CEPFO8.4e-1976.47Mitochondrial Rho GTPase OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_06689 PE=... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007005 mitochondrion organization
cellular_component GO:0031307 integral component of mitochondrial outer membrane
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy3G020540.1CsGy3G020540.1mRNA


Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:3.40.50.300coord: 10..71
e-value: 3.3E-5
score: 25.7