Csa3G283010 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G283010
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 16739460 .. 16739990 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGTTACGAAAAGAGAAAAAGAAAAGGCGAGAGAAGAAGATGAACACCTTCGTCAACTTTCCACAAAGAAAAGGAAAAGTGTTACATTTCTAGGCGATGCAAAAAGTAAGTTGGCAGAGGTACGAGCAGCAAAGCAGGGGAAACACGATACACTTGCAGACTTAAGCGAGCAGGTTAATAGAGTGGCAGCCGTGAATCAGACGGCCAAACAACATGAGATTGACCACTTAGATATTGTGGTAGAGGAACTCTCAAGGGAAATTGAAAGGATGAGTCCTACGGAGTCACCCGGGCAAATTGAAGACCCAGGACTTCTAAGCACTAAAGGTTTGCTAAAAAGACAAACCAAGGCAGGAACATCCAAACAAAAAGGTGGAAAAAAAGGATTATTATCTTTCAATGGACTGCTACCAGATTTTCTCCATCGATCAATTAAGGCGCTAAAATGGGAGAAATTATTACTCAGCGAAGCAAGGGTAAAACTAGATTTGGTAGAAATGTTTTACGCGGTGAAATTCCACCCCTAA

mRNA sequence

ATGATGGTTACGAAAAGAGAAAAAGAAAAGGCGAGAGAAGAAGATGAACACCTTCGTCAACTTTCCACAAAGAAAAGGAAAAGTGTTACATTTCTAGGCGATGCAAAAAGTAAGTTGGCAGAGGTACGAGCAGCAAAGCAGGGGAAACACGATACACTTGCAGACTTAAGCGAGCAGGTTAATAGAGTGGCAGCCGTGAATCAGACGGCCAAACAACATGAGATTGACCACTTAGATATTGTGGTAGAGGAACTCTCAAGGGAAATTGAAAGGATGAGTCCTACGGAGTCACCCGGGCAAATTGAAGACCCAGGACTTCTAAGCACTAAAGGTTTGCTAAAAAGACAAACCAAGGCAGGAACATCCAAACAAAAAGGTGGAAAAAAAGGATTATTATCTTTCAATGGACTGCTACCAGATTTTCTCCATCGATCAATTAAGGCGCTAAAATGGGAGAAATTATTACTCAGCGAAGCAAGGGTAAAACTAGATTTGGTAGAAATGTTTTACGCGGTGAAATTCCACCCCTAA

Coding sequence (CDS)

ATGATGGTTACGAAAAGAGAAAAAGAAAAGGCGAGAGAAGAAGATGAACACCTTCGTCAACTTTCCACAAAGAAAAGGAAAAGTGTTACATTTCTAGGCGATGCAAAAAGTAAGTTGGCAGAGGTACGAGCAGCAAAGCAGGGGAAACACGATACACTTGCAGACTTAAGCGAGCAGGTTAATAGAGTGGCAGCCGTGAATCAGACGGCCAAACAACATGAGATTGACCACTTAGATATTGTGGTAGAGGAACTCTCAAGGGAAATTGAAAGGATGAGTCCTACGGAGTCACCCGGGCAAATTGAAGACCCAGGACTTCTAAGCACTAAAGGTTTGCTAAAAAGACAAACCAAGGCAGGAACATCCAAACAAAAAGGTGGAAAAAAAGGATTATTATCTTTCAATGGACTGCTACCAGATTTTCTCCATCGATCAATTAAGGCGCTAAAATGGGAGAAATTATTACTCAGCGAAGCAAGGGTAAAACTAGATTTGGTAGAAATGTTTTACGCGGTGAAATTCCACCCCTAA

Protein sequence

MMVTKREKEKAREEDEHLRQLSTKKRKSVTFLGDAKSKLAEVRAAKQGKHDTLADLSEQVNRVAAVNQTAKQHEIDHLDIVVEELSREIERMSPTESPGQIEDPGLLSTKGLLKRQTKAGTSKQKGGKKGLLSFNGLLPDFLHRSIKALKWEKLLLSEARVKLDLVEMFYAVKFHP*
Homology
[Close]
BLAST of Csa3G283010 vs. TrEMBL
Match: A0A0A0L9V9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G283010 PE=4 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 1.9e-91
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 1 

Query: 1   MMVTKREKEKAREEDEHLRQLSTKKRKSVTFLGDAKSKLAEVRAAKQGKHDTLADLSEQV 60
           MMVTKREKEKAREEDEHLRQLSTKKRKSVTFLGDAKSKLAEVRAAKQGKHDTLADLSEQV
Sbjct: 1   MMVTKREKEKAREEDEHLRQLSTKKRKSVTFLGDAKSKLAEVRAAKQGKHDTLADLSEQV 60

Query: 61  NRVAAVNQTAKQHEIDHLDIVVEELSREIERMSPTESPGQIEDPGLLSTKGLLKRQTKAG 120
           NRVAAVNQTAKQHEIDHLDIVVEELSREIERMSPTESPGQIEDPGLLSTKGLLKRQTKAG
Sbjct: 61  NRVAAVNQTAKQHEIDHLDIVVEELSREIERMSPTESPGQIEDPGLLSTKGLLKRQTKAG 120

Query: 121 TSKQKGGKKGLLSFNGLLPDFLHRSIKALKWEKLLLSEARVKLDLVEMFYAVKFHP 177
           TSKQKGGKKGLLSFNGLLPDFLHRSIKALKWEKLLLSEARVKLDLVEMFYAVKFHP
Sbjct: 121 TSKQKGGKKGLLSFNGLLPDFLHRSIKALKWEKLLLSEARVKLDLVEMFYAVKFHP 176

[Close]
BLAST of Csa3G283010 vs. TrEMBL
Match: A0A0A0LT82_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G169970 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 9.6e-11
Identity = 33/49 (67.35%), Postives = 39/49 (79.59%), Query Frame = 1 

Query: 128 KKGLLSFNGLLPDFLHRSIKALKWEKLLLSEARVKLDLVEMFYAVKFHP 177
           +KGLLSFNG LPDFL+  IKALKWEK    E +VK D+V++FYA KFHP
Sbjct: 13  EKGLLSFNGSLPDFLYAPIKALKWEKFFTDETKVKFDVVDLFYATKFHP 61

[Close]
BLAST of Csa3G283010 vs. TrEMBL
Match: A0A0A0KDX1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G160700 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 9.0e-09
Identity = 46/127 (36.22%), Postives = 72/127 (56.69%), Query Frame = 1 

Query: 1   MMVTKREKEKA--------REEDEHLRQLSTKKRKSVTFLGDAKSKLAEVRAAKQGKHDT 60
           MM  KREKE+A        R+ED+  R++S +KR+SVT L +AKSKLA+++  K+ K + 
Sbjct: 82  MMKEKREKEEADRIEREAARKEDKCFRKISKEKRQSVTSLAEAKSKLAKIQTPKKMKQEK 141

Query: 61  LADLSEQVNRVAAVNQTAKQHEIDHLDIVVEELSREIERMSPTESPGQIEDPGLLSTKGL 120
           L  L ++V    +   +             EEL+R++  MSP E+   +EDP L++ K  
Sbjct: 142 LEKLDDRVASGGSHGYSG------------EELTRDLGSMSPEETRLGLEDPRLINAKER 196

[Close]
BLAST of Csa3G283010 vs. NCBI nr
Match: gi|700202631|gb|KGN57764.1| (hypothetical protein Csa_3G283010 [Cucumis sativus])

HSP 1 Score: 343.2 bits (879), Expect = 2.7e-91
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 1 

Query: 1   MMVTKREKEKAREEDEHLRQLSTKKRKSVTFLGDAKSKLAEVRAAKQGKHDTLADLSEQV 60
           MMVTKREKEKAREEDEHLRQLSTKKRKSVTFLGDAKSKLAEVRAAKQGKHDTLADLSEQV
Sbjct: 1   MMVTKREKEKAREEDEHLRQLSTKKRKSVTFLGDAKSKLAEVRAAKQGKHDTLADLSEQV 60

Query: 61  NRVAAVNQTAKQHEIDHLDIVVEELSREIERMSPTESPGQIEDPGLLSTKGLLKRQTKAG 120
           NRVAAVNQTAKQHEIDHLDIVVEELSREIERMSPTESPGQIEDPGLLSTKGLLKRQTKAG
Sbjct: 61  NRVAAVNQTAKQHEIDHLDIVVEELSREIERMSPTESPGQIEDPGLLSTKGLLKRQTKAG 120

Query: 121 TSKQKGGKKGLLSFNGLLPDFLHRSIKALKWEKLLLSEARVKLDLVEMFYAVKFHP 177
           TSKQKGGKKGLLSFNGLLPDFLHRSIKALKWEKLLLSEARVKLDLVEMFYAVKFHP
Sbjct: 121 TSKQKGGKKGLLSFNGLLPDFLHRSIKALKWEKLLLSEARVKLDLVEMFYAVKFHP 176

[Close]
BLAST of Csa3G283010 vs. NCBI nr
Match: gi|700209877|gb|KGN64973.1| (hypothetical protein Csa_1G169970 [Cucumis sativus])

HSP 1 Score: 75.1 bits (183), Expect = 1.4e-10
Identity = 33/49 (67.35%), Postives = 39/49 (79.59%), Query Frame = 1 

Query: 128 KKGLLSFNGLLPDFLHRSIKALKWEKLLLSEARVKLDLVEMFYAVKFHP 177
           +KGLLSFNG LPDFL+  IKALKWEK    E +VK D+V++FYA KFHP
Sbjct: 13  EKGLLSFNGSLPDFLYAPIKALKWEKFFTDETKVKFDVVDLFYATKFHP 61

[Close]
BLAST of Csa3G283010 vs. NCBI nr
Match: gi|659102436|ref|XP_008452128.1| (PREDICTED: uncharacterized protein LOC103493227 [Cucumis melo])

HSP 1 Score: 68.6 bits (166), Expect = 1.3e-08
Identity = 39/122 (31.97%), Postives = 65/122 (53.28%), Query Frame = 1 

Query: 4   TKREKEKAREEDEHLRQLSTKKRKSVTFLGDAKSKLAEVRAAKQGKHDTLADLSEQVNRV 63
           TK +K +   ED  L Q   +K+K+V  L + K KLA+++ AK+ +   LA   +QV  +
Sbjct: 10  TKAKKTRKEGEDARLCQTFQEKKKNVESLAEMKEKLAKIQTAKKVETKELAKFDDQVEGL 69

Query: 64  AAVNQTAKQHEIDHLDIVVEELSREIERMSPTESPGQIEDPGLLSTKGLLKRQTKAGTSK 123
              N+  +  +++ L++V  E   E+  +SP +     E  GL + K    ++TK GTSK
Sbjct: 70  EMKNEATENQKVNCLEVVAAEFQEEVPNISPLKPRLSPEASGLRAIKTKKTKKTKPGTSK 129

Query: 124 QK 126
            K
Sbjct: 130 PK 131

[Close]
BLAST of Csa3G283010 vs. NCBI nr
Match: gi|700191795|gb|KGN46999.1| (hypothetical protein Csa_6G160700 [Cucumis sativus])

HSP 1 Score: 68.6 bits (166), Expect = 1.3e-08
Identity = 46/127 (36.22%), Postives = 72/127 (56.69%), Query Frame = 1 

Query: 1   MMVTKREKEKA--------REEDEHLRQLSTKKRKSVTFLGDAKSKLAEVRAAKQGKHDT 60
           MM  KREKE+A        R+ED+  R++S +KR+SVT L +AKSKLA+++  K+ K + 
Sbjct: 82  MMKEKREKEEADRIEREAARKEDKCFRKISKEKRQSVTSLAEAKSKLAKIQTPKKMKQEK 141

Query: 61  LADLSEQVNRVAAVNQTAKQHEIDHLDIVVEELSREIERMSPTESPGQIEDPGLLSTKGL 120
           L  L ++V    +   +             EEL+R++  MSP E+   +EDP L++ K  
Sbjct: 142 LEKLDDRVASGGSHGYSG------------EELTRDLGSMSPEETRLGLEDPRLINAKER 196

The following BLAST results are available for this feature:
BLAST of Csa3G283010 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L9V9_CUCSA1.9e-91100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G283010 PE=4 SV=1[more]
A0A0A0LT82_CUCSA9.6e-1167.35Uncharacterized protein OS=Cucumis sativus GN=Csa_1G169970 PE=4 SV=1[more]
A0A0A0KDX1_CUCSA9.0e-0936.22Uncharacterized protein OS=Cucumis sativus GN=Csa_6G160700 PE=4 SV=1[more]
BLAST of Csa3G283010 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202631|gb|KGN57764.1|2.7e-91100.00hypothetical protein Csa_3G283010 [Cucumis sativus][more]
gi|700209877|gb|KGN64973.1|1.4e-1067.35hypothetical protein Csa_1G169970 [Cucumis sativus][more]
gi|659102436|ref|XP_008452128.1|1.3e-0831.97PREDICTED: uncharacterized protein LOC103493227 [Cucumis melo][more]
gi|700191795|gb|KGN46999.1|1.3e-0836.22hypothetical protein Csa_6G160700 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU116539cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G283010.1Csa3G283010.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU116539CU116539transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa3G283010CsGy3G020420Cucumber (Gy14) v2cgybcuB109
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G283010Melon (DHL92) v3.6.1cumedB239
Csa3G283010Silver-seed gourdcarcuB0513
Csa3G283010Silver-seed gourdcarcuB0780
Csa3G283010Watermelon (97103) v2cuwmbB218
Csa3G283010Wax gourdcuwgoB271
Csa3G283010Cucumber (Gy14) v1cgycuB003
Csa3G283010Cucurbita maxima (Rimu)cmacuB242
Csa3G283010Cucurbita maxima (Rimu)cmacuB455
Csa3G283010Cucurbita moschata (Rifu)cmocuB229
Csa3G283010Cucurbita moschata (Rifu)cmocuB442
Csa3G283010Melon (DHL92) v3.5.1cumeB161
Csa3G283010Melon (DHL92) v3.5.1cumeB246
Csa3G283010Watermelon (Charleston Gray)cuwcgB233
Csa3G283010Watermelon (97103) v1cuwmB245
Csa3G283010Cucurbita pepo (Zucchini)cpecuB547
Csa3G283010Cucurbita pepo (Zucchini)cpecuB600
Csa3G283010Bottle gourd (USVL1VR-Ls)culsiB212