CsGy3G020420 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G020420
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr3 : 17179231 .. 17179679 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAAAAGTAAGTTGGCATAGGTACGAGCAGCAAATCAAGGGAAACACGATACACTCGCAGACTTAAGCGAGCAGGTTAATAGAGTGGCAGCCGTGAATCAGGCGGCCAAACAACACGAGATTGACCACTTAGATATTGTGGCAGAGGAACTCTCAAGGGAAATTGAAAGGATGAGTCCTACGGAGTCACCCAGGCAAATTGAAGACCCAGGACTTCTAAGCACTAAAGGCTTGCTAAAAAGACAAACCAAGGCAGGAACATCAAAACAAAAAGGTGGAAAAAAAGAAAAGAAGATAAAAAAAGGATTGTTATCTTTCAATGGACTGCTACCAGATTTTCTCCGTCGATCAATTAAAGCGCTAAAATGGGAGAAATTATTTTTCAGCGAAGCAAGGGTAAAACTAGATTTGGTAGAAATGTTTTACGCGGTGAAATTCCACCCCTAA

mRNA sequence

ATGCAAAAAGTACGAGCAGCAAATCAAGGGAAACACGATACACTCGCAGACTTAAGCGAGCAGGTTAATAGAGTGGCAGCCGTGAATCAGGCGGCCAAACAACACGAGATTGACCACTTAGATATTGTGGCAGAGGAACTCTCAAGGGAAATTGAAAGGATGAGTCCTACGGAGTCACCCAGGCAAATTGAAGACCCAGGACTTCTAAGCACTAAAGGCTTGCTAAAAAGACAAACCAAGGCAGGAACATCAAAACAAAAAGGTGGAAAAAAAGAAAAGAAGATAAAAAAAGGATTGTTATCTTTCAATGGACTGCTACCAGATTTTCTCCGTCGATCAATTAAAGCGCTAAAATGGGAGAAATTATTTTTCAGCGAAGCAAGGGTAAAACTAGATTTGGTAGAAATGTTTTACGCGGTGAAATTCCACCCCTAA

Coding sequence (CDS)

ATGCAAAAAGTACGAGCAGCAAATCAAGGGAAACACGATACACTCGCAGACTTAAGCGAGCAGGTTAATAGAGTGGCAGCCGTGAATCAGGCGGCCAAACAACACGAGATTGACCACTTAGATATTGTGGCAGAGGAACTCTCAAGGGAAATTGAAAGGATGAGTCCTACGGAGTCACCCAGGCAAATTGAAGACCCAGGACTTCTAAGCACTAAAGGCTTGCTAAAAAGACAAACCAAGGCAGGAACATCAAAACAAAAAGGTGGAAAAAAAGAAAAGAAGATAAAAAAAGGATTGTTATCTTTCAATGGACTGCTACCAGATTTTCTCCGTCGATCAATTAAAGCGCTAAAATGGGAGAAATTATTTTTCAGCGAAGCAAGGGTAAAACTAGATTTGGTAGAAATGTTTTACGCGGTGAAATTCCACCCCTAA

Protein sequence

MQKVRAANQGKHDTLADLSEQVNRVAAVNQAAKQHEIDHLDIVAEELSREIERMSPTESPRQIEDPGLLSTKGLLKRQTKAGTSKQKGGKKEKKIKKGLLSFNGLLPDFLRRSIKALKWEKLFFSEARVKLDLVEMFYAVKFHP

Homology

[Close]

BLAST of CsGy3G020420 vs. NCBI nr
Match: KGN57764.1 (hypothetical protein Csa_3G283010 [Cucumis sativus])

HSP 1 Score: 206.8 bits (525), Expect = 4.8e-50
Identity = 114/144 (79.17%), Postives = 116/144 (80.56%), Query Frame = 0


Query: 1   MQKVRAANQGKHDTLADLSEQVNRVAAVNQAAKQHEIDHLDIVAEELSREIERMSPTESP 60
           + +VRAA QGKHDTLADLSEQVNRVAAVNQ AKQHEIDHLDIV EELSREIERMSPTESP
Sbjct: 39  LAEVRAAKQGKHDTLADLSEQVNRVAAVNQTAKQHEIDHLDIVVEELSREIERMSPTESP 98

Query: 61  RQIEDPGLLSTKGLLKRQTKAGTSKQKXXXXXXKIKKGLLSFNGLLPDFLRRSIKALKWE 120
            QI            KRQTKAGTSKQK        KKGLLSFNGLLPDFL RSIKALKWE
Sbjct: 99  GQIXXXXXXXXXXXXKRQTKAGTSKQKGG------KKGLLSFNGLLPDFLHRSIKALKWE 158

Query: 121 KLFFSEARVKLDLVEMFYAVKFHP 145
           KL  SEARVKLDLVEMFYAVKFHP
Sbjct: 159 KLLLSEARVKLDLVEMFYAVKFHP 176

[Close]

BLAST of CsGy3G020420 vs. NCBI nr
Match: KGN64973.1 (hypothetical protein Csa_1G169970 [Cucumis sativus])

HSP 1 Score: 77.8 bits (190), Expect = 3.4e-11
Identity = 36/51 (70.59%), Postives = 41/51 (80.39%), Query Frame = 0


Query: 94  KIKKGLLSFNGLLPDFLRRSIKALKWEKLFFSEARVKLDLVEMFYAVKFHP 145
           KI+KGLLSFNG LPDFL   IKALKWEK F  E +VK D+V++FYA KFHP
Sbjct: 11  KIEKGLLSFNGSLPDFLYAPIKALKWEKFFTDETKVKFDVVDLFYATKFHP 61

[Close]

BLAST of CsGy3G020420 vs. TrEMBL
Match: tr|A0A0A0L9V9|A0A0A0L9V9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G283010 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 3.2e-50
Identity = 114/144 (79.17%), Postives = 116/144 (80.56%), Query Frame = 0


Query: 1   MQKVRAANQGKHDTLADLSEQVNRVAAVNQAAKQHEIDHLDIVAEELSREIERMSPTESP 60
           + +VRAA QGKHDTLADLSEQVNRVAAVNQ AKQHEIDHLDIV EELSREIERMSPTESP
Sbjct: 39  LAEVRAAKQGKHDTLADLSEQVNRVAAVNQTAKQHEIDHLDIVVEELSREIERMSPTESP 98

Query: 61  RQIEDPGLLSTKGLLKRQTKAGTSKQKXXXXXXKIKKGLLSFNGLLPDFLRRSIKALKWE 120
            QI            KRQTKAGTSKQK        KKGLLSFNGLLPDFL RSIKALKWE
Sbjct: 99  GQIXXXXXXXXXXXXKRQTKAGTSKQKGG------KKGLLSFNGLLPDFLHRSIKALKWE 158

Query: 121 KLFFSEARVKLDLVEMFYAVKFHP 145
           KL  SEARVKLDLVEMFYAVKFHP
Sbjct: 159 KLLLSEARVKLDLVEMFYAVKFHP 176

[Close]

BLAST of CsGy3G020420 vs. TrEMBL
Match: tr|A0A0A0LT82|A0A0A0LT82_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G169970 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.2e-11
Identity = 36/51 (70.59%), Postives = 41/51 (80.39%), Query Frame = 0


Query: 94  KIKKGLLSFNGLLPDFLRRSIKALKWEKLFFSEARVKLDLVEMFYAVKFHP 145
           KI+KGLLSFNG LPDFL   IKALKWEK F  E +VK D+V++FYA KFHP
Sbjct: 11  KIEKGLLSFNGSLPDFLYAPIKALKWEKFFTDETKVKFDVVDLFYATKFHP 61

The following BLAST results are available for this feature:

BLAST of CsGy3G020420 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57764.1	4.8e-50	79.17	hypothetical protein Csa_3G283010 [Cucumis sativus]	[more]
KGN64973.1	3.4e-11	70.59	hypothetical protein Csa_1G169970 [Cucumis sativus]	[more]

BLAST of CsGy3G020420 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy3G020420 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy3G020420 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L9V9\|A0A0A0L9V9_CUCSA	3.2e-50	79.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G283010 PE=4 SV=1	[more]
tr\|A0A0A0LT82\|A0A0A0LT82_CUCSA	2.2e-11	70.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G169970 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G020420.1	CsGy3G020420.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..93

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy3G020420	Csa3G283010	Cucumber (Chinese Long) v2	cgybcuB109
CsGy3G020420	CsaV3_3G020780	Cucumber (Chinese Long) v3	cgybcucB117

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G020420	Cucurbita maxima (Rimu)	cgybcmaB308
CsGy3G020420	Cucurbita maxima (Rimu)	cgybcmaB368
CsGy3G020420	Cucurbita moschata (Rifu)	cgybcmoB281
CsGy3G020420	Cucurbita moschata (Rifu)	cgybcmoB339
CsGy3G020420	Cucurbita pepo (Zucchini)	cgybcpeB380
CsGy3G020420	Cucurbita pepo (Zucchini)	cgybcpeB397
CsGy3G020420	Bottle gourd (USVL1VR-Ls)	cgyblsiB199
CsGy3G020420	Melon (DHL92) v3.5.1	cgybmeB212
CsGy3G020420	Melon (DHL92) v3.6.1	cgybmedB216
CsGy3G020420	Watermelon (Charleston Gray)	cgybwcgB217
CsGy3G020420	Watermelon (97103) v1	cgybwmB232
CsGy3G020420	Wild cucumber (PI 183967)	cgybcpiB110
CsGy3G020420	Silver-seed gourd	carcgybB0489
CsGy3G020420	Silver-seed gourd	carcgybB0757
CsGy3G020420	Watermelon (97103) v2	cgybwmbB209
CsGy3G020420	Wax gourd	cgybwgoB259