Csa3G263210 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G263210
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr3 : 16206351 .. 16206656 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGATTAAAATTTGCGAAAATCCAAACCTCCAAGAAAAAGAAGCTGGAGGAGCTTGCGGTTTTGAGTAAGCGAATTGAAAGTGTTGTAGTAAGAAGCAAAGCTGCAGATGAGGAAGAGGTTGATCGTCTAAAGGTTGTTGTAGCAGAACTCGACAAGGAGATTGAGAGGATGAGTCCTCTAGAACCAAGAATAAGACTTGAAGAGCTTAGGCTTATTGATCCTACAGAATCAAAGAAGGGTAAAGAAAATGTGGGGGCATCTAAATCGGAGGATGCCCAGACGAGTGAGCTCTTAAGCGCATAG

mRNA sequence

ATGCGATTAAAATTTGCGAAAATCCAAACCTCCAAGAAAAAGAAGCTGGAGGAGCTTGCGGTTTTGAGTAAGCGAATTGAAAGTGTTGTAGTAAGAAGCAAAGCTGCAGATGAGGAAGAGGTTGATCGTCTAAAGGTTGTTGTAGCAGAACTCGACAAGGAGATTGAGAGGATGAGTCCTCTAGAACCAAGAATAAGACTTGAAGAGCTTAGGCTTATTGATCCTACAGAATCAAAGAAGGGTAAAGAAAATGTGGGGGCATCTAAATCGGAGGATGCCCAGACGAGTGAGCTCTTAAGCGCATAG

Coding sequence (CDS)

ATGCGATTAAAATTTGCGAAAATCCAAACCTCCAAGAAAAAGAAGCTGGAGGAGCTTGCGGTTTTGAGTAAGCGAATTGAAAGTGTTGTAGTAAGAAGCAAAGCTGCAGATGAGGAAGAGGTTGATCGTCTAAAGGTTGTTGTAGCAGAACTCGACAAGGAGATTGAGAGGATGAGTCCTCTAGAACCAAGAATAAGACTTGAAGAGCTTAGGCTTATTGATCCTACAGAATCAAAGAAGGGTAAAGAAAATGTGGGGGCATCTAAATCGGAGGATGCCCAGACGAGTGAGCTCTTAAGCGCATAG

Protein sequence

MRLKFAKIQTSKKKKLEELAVLSKRIESVVVRSKAADEEEVDRLKVVVAELDKEIERMSPLEPRIRLEELRLIDPTESKKGKENVGASKSEDAQTSELLSA*

Homology

[Close]

BLAST of Csa3G263210 vs. TrEMBL
Match: A0A0A0L7E0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G263210 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 5.9e-45
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1


Query: 1   MRLKFAKIQTSKKKKLEELAVLSKRIESVVVRSKAADEEEVDRLKVVVAELDKEIERMSP 60
           MRLKFAKIQTSKKKKLEELAVLSKRIESVVVRSKAADEEEVDRLKVVVAELDKEIERMSP
Sbjct: 1   MRLKFAKIQTSKKKKLEELAVLSKRIESVVVRSKAADEEEVDRLKVVVAELDKEIERMSP 60

Query: 61  LEPRIRLEELRLIDPTESKKGKENVGASKSEDAQTSELLSA 102
           LEPRIRLEELRLIDPTESKKGKENVGASKSEDAQTSELLSA
Sbjct: 61  LEPRIRLEELRLIDPTESKKGKENVGASKSEDAQTSELLSA 101

[Close]

BLAST of Csa3G263210 vs. TrEMBL
Match: A0A0A0KJ65_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G003650 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.6e-10
Identity = 43/100 (43.00%), Postives = 59/100 (59.00%), Query Frame = 1


Query: 12  KKKKLEELAVLSKRIESVVV----------RSKAADEEEVDRLKVVVAELDKEIERMSPL 71
           +KKK+EE+ V S+  E              + K A  +EVDRLKVVV +  +E ER SPL
Sbjct: 45  RKKKVEEVVVESQEEEEARRHERTSKECGRKKKVAKNKEVDRLKVVVEKFGEEFERTSPL 104

Query: 72  EPRIRLEELRLIDPTESKKGKENVGASKSEDAQTSELLSA 102
           +PR   +E +L+DP++ KKGK   G S+ ED + SE  SA
Sbjct: 105 KPRSWPKEFKLVDPSQPKKGKGEAGTSRLEDVEESEPQSA 144

[Close]

BLAST of Csa3G263210 vs. TrEMBL
Match: A0A0A0KAB8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G119890 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 8.0e-10
Identity = 35/55 (63.64%), Postives = 43/55 (78.18%), Query Frame = 1


Query: 39 EEVDRLKVVVAELDKEIERMSPLEPRIRLEELRLIDPTESKKGKENVGASKSEDA 94
          +EVDRLKVV  EL KEIERMSPLEPR++ ++  L+DP  SKKGK  VGAS+ + A
Sbjct: 2  QEVDRLKVVAEELGKEIERMSPLEPRLKPKDSGLVDPAHSKKGKGKVGASRPKGA 56

[Close]

BLAST of Csa3G263210 vs. TrEMBL
Match: A0A0A0L9V9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G283010 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 7.0e-06
Identity = 31/88 (35.23%), Postives = 52/88 (59.09%), Query Frame = 1


Query: 4   KFAKIQTSKKKKLEELAVLSKRIESVVVRSKAADEEEVDRLKVVVAELDKEIERMSPLEP 63
           K A+++ +K+ K + LA LS+++  V   ++ A + E+D L +VV EL +EIERMSP E 
Sbjct: 38  KLAEVRAAKQGKHDTLADLSEQVNRVAAVNQTAKQHEIDHLDIVVEELSREIERMSPTES 97

Query: 64  RIRLEELRLIDPTESKKGKENVGASKSE 92
             ++E+  L+      K +   G SK +
Sbjct: 98  PGQIEDPGLLSTKGLLKRQTKAGTSKQK 125

[Close]

BLAST of Csa3G263210 vs. NCBI nr
Match: gi|700202590|gb|KGN57723.1| (hypothetical protein Csa_3G263210 [Cucumis sativus])

HSP 1 Score: 188.0 bits (476), Expect = 8.4e-45
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1


Query: 1   MRLKFAKIQTSKKKKLEELAVLSKRIESVVVRSKAADEEEVDRLKVVVAELDKEIERMSP 60
           MRLKFAKIQTSKKKKLEELAVLSKRIESVVVRSKAADEEEVDRLKVVVAELDKEIERMSP
Sbjct: 1   MRLKFAKIQTSKKKKLEELAVLSKRIESVVVRSKAADEEEVDRLKVVVAELDKEIERMSP 60

Query: 61  LEPRIRLEELRLIDPTESKKGKENVGASKSEDAQTSELLSA 102
           LEPRIRLEELRLIDPTESKKGKENVGASKSEDAQTSELLSA
Sbjct: 61  LEPRIRLEELRLIDPTESKKGKENVGASKSEDAQTSELLSA 101

[Close]

BLAST of Csa3G263210 vs. NCBI nr
Match: gi|700194396|gb|KGN49573.1| (hypothetical protein Csa_5G003650 [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 2.3e-10
Identity = 43/100 (43.00%), Postives = 59/100 (59.00%), Query Frame = 1


Query: 12  KKKKLEELAVLSKRIESVVV----------RSKAADEEEVDRLKVVVAELDKEIERMSPL 71
           +KKK+EE+ V S+  E              + K A  +EVDRLKVVV +  +E ER SPL
Sbjct: 45  RKKKVEEVVVESQEEEEARRHERTSKECGRKKKVAKNKEVDRLKVVVEKFGEEFERTSPL 104

Query: 72  EPRIRLEELRLIDPTESKKGKENVGASKSEDAQTSELLSA 102
           +PR   +E +L+DP++ KKGK   G S+ ED + SE  SA
Sbjct: 105 KPRSWPKEFKLVDPSQPKKGKGEAGTSRLEDVEESEPQSA 144

[Close]

BLAST of Csa3G263210 vs. NCBI nr
Match: gi|700191461|gb|KGN46665.1| (hypothetical protein Csa_6G119890 [Cucumis sativus])

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-09
Identity = 35/55 (63.64%), Postives = 43/55 (78.18%), Query Frame = 1


Query: 39 EEVDRLKVVVAELDKEIERMSPLEPRIRLEELRLIDPTESKKGKENVGASKSEDA 94
          +EVDRLKVV  EL KEIERMSPLEPR++ ++  L+DP  SKKGK  VGAS+ + A
Sbjct: 2  QEVDRLKVVAEELGKEIERMSPLEPRLKPKDSGLVDPAHSKKGKGKVGASRPKGA 56

[Close]

BLAST of Csa3G263210 vs. NCBI nr
Match: gi|659102436|ref|XP_008452128.1| (PREDICTED: uncharacterized protein LOC103493227 [Cucumis melo])

HSP 1 Score: 65.9 bits (159), Expect = 4.8e-08
Identity = 38/95 (40.00%), Postives = 62/95 (65.26%), Query Frame = 1


Query: 1   MRLKFAKIQTSKKKKLEELAVLSKRIESVVVRSKAADEEEVDRLKVVVAELDKEIERMSP 60
           M+ K AKIQT+KK + +ELA    ++E + ++++A + ++V+ L+VV AE  +E+  +SP
Sbjct: 41  MKEKLAKIQTAKKVETKELAKFDDQVEGLEMKNEATENQKVNCLEVVAAEFQEEVPNISP 100

Query: 61  LEPRIRLEE--LRLIDPTESKKGKENVGASKSEDA 94
           L+PR+  E   LR I   ++KK K   G SK +DA
Sbjct: 101 LKPRLSPEASGLRAIKTKKTKKTKP--GTSKPKDA 133

The following BLAST results are available for this feature:

BLAST of Csa3G263210 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7E0_CUCSA	5.9e-45	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G263210 PE=4 SV=1	[more]
A0A0A0KJ65_CUCSA	1.6e-10	43.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G003650 PE=4 SV=1	[more]
A0A0A0KAB8_CUCSA	8.0e-10	63.64	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G119890 PE=4 SV=1	[more]
A0A0A0L9V9_CUCSA	7.0e-06	35.23	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G283010 PE=4 SV=1	[more]

BLAST of Csa3G263210 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202590\|gb\|KGN57723.1\|	8.4e-45	100.00	hypothetical protein Csa_3G263210 [Cucumis sativus]	[more]
gi\|700194396\|gb\|KGN49573.1\|	2.3e-10	43.00	hypothetical protein Csa_5G003650 [Cucumis sativus]	[more]
gi\|700191461\|gb\|KGN46665.1\|	1.1e-09	63.64	hypothetical protein Csa_6G119890 [Cucumis sativus]	[more]
gi\|659102436\|ref\|XP_008452128.1\|	4.8e-08	40.00	PREDICTED: uncharacterized protein LOC103493227 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G263210.1	Csa3G263210.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 34..54 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa3G263210	CSPI03G20430	Wild cucumber (PI 183967)	cpicuB120
Csa3G263210	CsGy3G020150	Cucumber (Gy14) v2	cgybcuB109

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G263210	Melon (DHL92) v3.6.1	cumedB228
Csa3G263210	Silver-seed gourd	carcuB0513
Csa3G263210	Silver-seed gourd	carcuB0780
Csa3G263210	Watermelon (97103) v2	cuwmbB218
Csa3G263210	Wax gourd	cuwgoB271
Csa3G263210	Cucumber (Gy14) v1	cgycuB003
Csa3G263210	Cucurbita maxima (Rimu)	cmacuB242
Csa3G263210	Cucurbita maxima (Rimu)	cmacuB455
Csa3G263210	Cucurbita moschata (Rifu)	cmocuB229
Csa3G263210	Cucurbita moschata (Rifu)	cmocuB442
Csa3G263210	Melon (DHL92) v3.5.1	cumeB161
Csa3G263210	Watermelon (Charleston Gray)	cuwcgB233
Csa3G263210	Watermelon (97103) v1	cuwmB247
Csa3G263210	Cucurbita pepo (Zucchini)	cpecuB547
Csa3G263210	Cucurbita pepo (Zucchini)	cpecuB600
Csa3G263210	Bottle gourd (USVL1VR-Ls)	culsiB212