CsGy3G020150 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G020150
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr3 : 16671362 .. 16672504 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGATTAAAATTTGCGAAAATCCAAACCTCCAAGAAAAAGAAGCTGGAGGAGCTTGCGGTTTTGAGTAAGCGAATTGAAAGTGTTGTAGTAAGAAGCAAAGCTGCAGATGAGGAAGAGGTTGATCGTCTAAAGGTTGTTGTAGCAGAACTCGACAAGGAGATTGAGAGGATGAGTCCTCTAGAACCAAGAATAAGACTTGAAGAGCTTAGGCTTATTGATCCTACAGAATCAAAGAAGGGTAAAGAAAATGTGGGGGCATCTAAATCGGAGGATGCCCAGACGAGTGAGCTCTTAAGCGCATAGGAATTAGATAAATTGATCAAAATAGAGAAAAGTCTCTACTCGTTCATTGAACATCTACCAAACTTTCTTTATGTATCCATTAGGGCATTCAAGTGGGAAGGGTTCTTCAGGGGCGAAACAAAGGTCAGATTAGCTGTTGTAGACATCATCTTTGCAGCACAGTATCATCCAGTTCATTCATTCGCAACCATGAAAGGTGAGAAAGTCTCCTTCTTCGTCGAAGAAATCAATGACCTTTATGGTCTTTCCAACAAACCAATAGATTAACTTGGCCTAGTGATCATCAACATACCCACAAAAGGGGATTTTAACAGAGCATTAAATGTAATCACCTGGCCAGGTGCAAATTGGGAAAAAATGTTAAGTGGGAAGCTGCTCTTATACCCTCACCAATTAACAACTGAAGCTAGTATCTACTTATATTTTATAAAAAAGAAGATACTTCCTACAAGGCATGATAGTACAGTGTCACTTGAATATATGCTGTAGCTTTTATACTATATCATTAAGAAGCAAGCATTCAATTTAGGCTGGATGATAAATAGAGCACTGCTTGGATGGATGAAGCATCCCAAGGACACCAAACCTTTCCCAACCAGGGTGGAAAAATTATGTCATAAGTACCTCCCTACTTTTGTGCGATACCCACAAATTGAAATGGGTGGGCGAGTTAATCTGGCGGGCCTTAATCGCTTAAGATCCATCCACTCCAATAAGGAAGGTCTTTGTCGCCAAAAGACACAAAAGCAAGGGGGATATGAACTTGAACAACAAGATGTTAATGAGTCCCCACATCATCCACCGTTGAAATTCGAAGAGGCAATTTTAAAACCATAA

mRNA sequence

ATGCGATTAAAATTTGCGAAAATCCAAACCTCCAAGAAAAAGAAGCTGGAGGAGCTTGCGGTTTTGAGTAAGCGAATTGAAAGTGTTGTAGTAAGAAGCAAAGCTGCAGATGAGGAAGAGGTTGATCGTCTAAAGGTTGTTGTAGCAGAACTCGACAAGGAGATTGAGAGGATGAGTCCTCTAGAACCAAGAATAAGACTTGAAGAGCTTAGGCTTATTGATCCTACAGAATCAAAGAAGGGTAAAGAAAATGTGGGGGCATCTAAATCGGAGGATGCCCAGACGAGCTGGATGATAAATAGAGCACTGCTTGGATGGATGAAGCATCCCAAGGACACCAAACCTTTCCCAACCAGGGTGGAAAAATTATGTCATAAGTACCTCCCTACTTTTGTGCGATACCCACAAATTGAAATGGGTGGGCGAGTTAATCTGGCGGGCCTTAATCGCTTAAGATCCATCCACTCCAATAAGGAAGGTCTTTGTCGCCAAAAGACACAAAAGCAAGGGGGATATGAACTTGAACAACAAGATGTTAATGAGTCCCCACATCATCCACCGTTGAAATTCGAAGAGGCAATTTTAAAACCATAA

Coding sequence (CDS)

ATGCGATTAAAATTTGCGAAAATCCAAACCTCCAAGAAAAAGAAGCTGGAGGAGCTTGCGGTTTTGAGTAAGCGAATTGAAAGTGTTGTAGTAAGAAGCAAAGCTGCAGATGAGGAAGAGGTTGATCGTCTAAAGGTTGTTGTAGCAGAACTCGACAAGGAGATTGAGAGGATGAGTCCTCTAGAACCAAGAATAAGACTTGAAGAGCTTAGGCTTATTGATCCTACAGAATCAAAGAAGGGTAAAGAAAATGTGGGGGCATCTAAATCGGAGGATGCCCAGACGAGCTGGATGATAAATAGAGCACTGCTTGGATGGATGAAGCATCCCAAGGACACCAAACCTTTCCCAACCAGGGTGGAAAAATTATGTCATAAGTACCTCCCTACTTTTGTGCGATACCCACAAATTGAAATGGGTGGGCGAGTTAATCTGGCGGGCCTTAATCGCTTAAGATCCATCCACTCCAATAAGGAAGGTCTTTGTCGCCAAAAGACACAAAAGCAAGGGGGATATGAACTTGAACAACAAGATGTTAATGAGTCCCCACATCATCCACCGTTGAAATTCGAAGAGGCAATTTTAAAACCATAA

Protein sequence

MRLKFAKIQTSKKKKLEELAVLSKRIESVVVRSKAADEEEVDRLKVVVAELDKEIERMSPLEPRIRLEELRLIDPTESKKGKENVGASKSEDAQTSWMINRALLGWMKHPKDTKPFPTRVEKLCHKYLPTFVRYPQIEMGGRVNLAGLNRLRSIHSNKEGLCRQKTQKQGGYELEQQDVNESPHHPPLKFEEAILKP

Homology

[Close]

BLAST of CsGy3G020150 vs. NCBI nr
Match: KGN57724.1 (hypothetical protein Csa_3G263220 [Cucumis sativus])

HSP 1 Score: 214.2 bits (544), Expect = 4.1e-52
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 98  MINRALLGWMKHPKDTKPFPTRVEKLCHKYLPTFVRYPQIEMGGRVNLAGLNRLRSIHSN 157
           MINRALLGWMKHPKDTKPFPTRVEKLCHKYLPTFVRYPQIEMGGRVNLAGLNRLRSIHSN
Sbjct: 1   MINRALLGWMKHPKDTKPFPTRVEKLCHKYLPTFVRYPQIEMGGRVNLAGLNRLRSIHSN 60

Query: 158 KEGLCRQKTQKQGGYELEQQDVNESPHHPPLKFEEAILKP 198
           KEGLCRQKTQKQGGYELEQQDVNESPHHPPLKFEEAILKP
Sbjct: 61  KEGLCRQKTQKQGGYELEQQDVNESPHHPPLKFEEAILKP 100

[Close]

BLAST of CsGy3G020150 vs. NCBI nr
Match: KGN57723.1 (hypothetical protein Csa_3G263210 [Cucumis sativus])

HSP 1 Score: 170.2 bits (430), Expect = 6.8e-39
Identity = 96/100 (96.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 1   MRLKFAKIQTSKKKKLEELAVLSKRIESVVVRSKAADEEEVDRLKVVVAELDKEIERMSP 60
           MRLKFAKIQTSKKKKLEELAVLSKRIESVVVRSKAADEEEVDRLKVVVAELDKEIERMSP
Sbjct: 1   MRLKFAKIQTSKKKKLEELAVLSKRIESVVVRSKAADEEEVDRLKVVVAELDKEIERMSP 60

Query: 61  LEPRIRLEELRLIDPTESKKGKENVGASKSEDAQTSWMIN 101
           LEPRIRLEELRLIDPTESKKGKENVGASKSEDAQTS +++
Sbjct: 61  LEPRIRLEELRLIDPTESKKGKENVGASKSEDAQTSELLS 100

[Close]

BLAST of CsGy3G020150 vs. NCBI nr
Match: KGN46665.1 (hypothetical protein Csa_6G119890 [Cucumis sativus])

HSP 1 Score: 66.6 bits (161), Expect = 1.1e-07
Identity = 35/55 (63.64%), Postives = 43/55 (78.18%), Query Frame = 0


Query: 39 EEVDRLKVVVAELDKEIERMSPLEPRIRLEELRLIDPTESKKGKENVGASKSEDA 94
          +EVDRLKVV  EL KEIERMSPLEPR++ ++  L+DP  SKKGK  VGAS+ + A
Sbjct: 2  QEVDRLKVVAEELGKEIERMSPLEPRLKPKDSGLVDPAHSKKGKGKVGASRPKGA 56

[Close]

BLAST of CsGy3G020150 vs. NCBI nr
Match: KGN49573.1 (hypothetical protein Csa_5G003650 [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 5.8e-06
Identity = 32/65 (49.23%), Postives = 44/65 (67.69%), Query Frame = 0


Query: 32  RSKAADEEEVDRLKVVVAELDKEIERMSPLEPRIRLEELRLIDPTESKKGKENVGASKSE 91
           + K A  +EVDRLKVVV +  +E ER SPL+PR   +E +L+DP++ KKGK   G S+ E
Sbjct: 75  KKKVAKNKEVDRLKVVVEKFGEEFERTSPLKPRSWPKEFKLVDPSQPKKGKGEAGTSRLE 134

Query: 92  DAQTS 97
           D + S
Sbjct: 135 DVEES 139

[Close]

BLAST of CsGy3G020150 vs. NCBI nr
Match: KGN53624.1 (hypothetical protein Csa_4G091900 [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 1.7e-05
Identity = 25/42 (59.52%), Postives = 30/42 (71.43%), Query Frame = 0


Query: 98  MINRALLGWMKHPKDTKPFPTRVEKLCHKYLPTFVRYPQIEM 140
           +IN AL  W ++PK  KPFP+ +EKLC KYLPT  RYPQ  M
Sbjct: 143 IINGALFVWRRNPKGAKPFPSTMEKLCLKYLPTLARYPQTPM 184

[Close]

BLAST of CsGy3G020150 vs. TrEMBL
Match: tr|A0A0A0L9R5|A0A0A0L9R5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G263220 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 2.7e-52
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 98  MINRALLGWMKHPKDTKPFPTRVEKLCHKYLPTFVRYPQIEMGGRVNLAGLNRLRSIHSN 157
           MINRALLGWMKHPKDTKPFPTRVEKLCHKYLPTFVRYPQIEMGGRVNLAGLNRLRSIHSN
Sbjct: 1   MINRALLGWMKHPKDTKPFPTRVEKLCHKYLPTFVRYPQIEMGGRVNLAGLNRLRSIHSN 60

Query: 158 KEGLCRQKTQKQGGYELEQQDVNESPHHPPLKFEEAILKP 198
           KEGLCRQKTQKQGGYELEQQDVNESPHHPPLKFEEAILKP
Sbjct: 61  KEGLCRQKTQKQGGYELEQQDVNESPHHPPLKFEEAILKP 100

[Close]

BLAST of CsGy3G020150 vs. TrEMBL
Match: tr|A0A0A0L7E0|A0A0A0L7E0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G263210 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 4.5e-39
Identity = 96/100 (96.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 1   MRLKFAKIQTSKKKKLEELAVLSKRIESVVVRSKAADEEEVDRLKVVVAELDKEIERMSP 60
           MRLKFAKIQTSKKKKLEELAVLSKRIESVVVRSKAADEEEVDRLKVVVAELDKEIERMSP
Sbjct: 1   MRLKFAKIQTSKKKKLEELAVLSKRIESVVVRSKAADEEEVDRLKVVVAELDKEIERMSP 60

Query: 61  LEPRIRLEELRLIDPTESKKGKENVGASKSEDAQTSWMIN 101
           LEPRIRLEELRLIDPTESKKGKENVGASKSEDAQTS +++
Sbjct: 61  LEPRIRLEELRLIDPTESKKGKENVGASKSEDAQTSELLS 100

[Close]

BLAST of CsGy3G020150 vs. TrEMBL
Match: tr|A0A0A0KAB8|A0A0A0KAB8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G119890 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 7.0e-08
Identity = 35/55 (63.64%), Postives = 43/55 (78.18%), Query Frame = 0


Query: 39 EEVDRLKVVVAELDKEIERMSPLEPRIRLEELRLIDPTESKKGKENVGASKSEDA 94
          +EVDRLKVV  EL KEIERMSPLEPR++ ++  L+DP  SKKGK  VGAS+ + A
Sbjct: 2  QEVDRLKVVAEELGKEIERMSPLEPRLKPKDSGLVDPAHSKKGKGKVGASRPKGA 56

[Close]

BLAST of CsGy3G020150 vs. TrEMBL
Match: tr|A0A0A0KJ65|A0A0A0KJ65_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G003650 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.8e-06
Identity = 32/65 (49.23%), Postives = 44/65 (67.69%), Query Frame = 0


Query: 32  RSKAADEEEVDRLKVVVAELDKEIERMSPLEPRIRLEELRLIDPTESKKGKENVGASKSE 91
           + K A  +EVDRLKVVV +  +E ER SPL+PR   +E +L+DP++ KKGK   G S+ E
Sbjct: 75  KKKVAKNKEVDRLKVVVEKFGEEFERTSPLKPRSWPKEFKLVDPSQPKKGKGEAGTSRLE 134

Query: 92  DAQTS 97
           D + S
Sbjct: 135 DVEES 139

[Close]

BLAST of CsGy3G020150 vs. TrEMBL
Match: tr|A0A0A0KXQ2|A0A0A0KXQ2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G091900 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.1e-05
Identity = 25/42 (59.52%), Postives = 30/42 (71.43%), Query Frame = 0


Query: 98  MINRALLGWMKHPKDTKPFPTRVEKLCHKYLPTFVRYPQIEM 140
           +IN AL  W ++PK  KPFP+ +EKLC KYLPT  RYPQ  M
Sbjct: 143 IINGALFVWRRNPKGAKPFPSTMEKLCLKYLPTLARYPQTPM 184

The following BLAST results are available for this feature:

BLAST of CsGy3G020150 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57724.1	4.1e-52	100.00	hypothetical protein Csa_3G263220 [Cucumis sativus]	[more]
KGN57723.1	6.8e-39	96.00	hypothetical protein Csa_3G263210 [Cucumis sativus]	[more]
KGN46665.1	1.1e-07	63.64	hypothetical protein Csa_6G119890 [Cucumis sativus]	[more]
KGN49573.1	5.8e-06	49.23	hypothetical protein Csa_5G003650 [Cucumis sativus]	[more]
KGN53624.1	1.7e-05	59.52	hypothetical protein Csa_4G091900 [Cucumis sativus]	[more]

BLAST of CsGy3G020150 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy3G020150 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy3G020150 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L9R5\|A0A0A0L9R5_CUCSA	2.7e-52	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G263220 PE=4 SV=1	[more]
tr\|A0A0A0L7E0\|A0A0A0L7E0_CUCSA	4.5e-39	96.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G263210 PE=4 SV=1	[more]
tr\|A0A0A0KAB8\|A0A0A0KAB8_CUCSA	7.0e-08	63.64	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G119890 PE=4 SV=1	[more]
tr\|A0A0A0KJ65\|A0A0A0KJ65_CUCSA	3.8e-06	49.23	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G003650 PE=4 SV=1	[more]
tr\|A0A0A0KXQ2\|A0A0A0KXQ2_CUCSA	1.1e-05	59.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G091900 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G020150.1	CsGy3G020150.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 34..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 178..197
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 161..197

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy3G020150	Csa3G263210	Cucumber (Chinese Long) v2	cgybcuB109
CsGy3G020150	CSPI03G20430	Wild cucumber (PI 183967)	cgybcpiB110
CsGy3G020150	CsaV3_3G020360	Cucumber (Chinese Long) v3	cgybcucB117

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G020150	Bottle gourd (USVL1VR-Ls)	cgyblsiB199
CsGy3G020150	Melon (DHL92) v3.5.1	cgybmeB212
CsGy3G020150	Melon (DHL92) v3.6.1	cgybmedB206
CsGy3G020150	Watermelon (Charleston Gray)	cgybwcgB217
CsGy3G020150	Watermelon (97103) v1	cgybwmB233
CsGy3G020150	Silver-seed gourd	carcgybB0489
CsGy3G020150	Silver-seed gourd	carcgybB0757
CsGy3G020150	Watermelon (97103) v2	cgybwmbB209
CsGy3G020150	Wax gourd	cgybwgoB259
CsGy3G020150	Cucurbita maxima (Rimu)	cgybcmaB308
CsGy3G020150	Cucurbita maxima (Rimu)	cgybcmaB368
CsGy3G020150	Cucurbita moschata (Rifu)	cgybcmoB281
CsGy3G020150	Cucurbita moschata (Rifu)	cgybcmoB339
CsGy3G020150	Cucurbita pepo (Zucchini)	cgybcpeB380
CsGy3G020150	Cucurbita pepo (Zucchini)	cgybcpeB397