Csa3G259710 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G259710
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 16148935 .. 16152956 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGCTTAAGGTTCAAGGGGACTCAGCTCTGAATCGGTATGTTGTTTTTTACTTTTATCCTTTTTTTCTTATTATTGAAACATTGAATTTACAGGTTTGAAATACAAAAACCTCCTCACACATCCTTTTTTACTAGTTGGCTACAAAAAAGAATGAGAACTCTGTCTAATAAAAACACCAAGATGACCTATGTTTGCCACGAACTATCAGAATTCCTCTTTTTTTTGGTAGAGCTTAAAGCGGCGGGGCTACTTTTACTGATTCGTTAGAAGTATTGTACAATCTGAAACTCAAAATTTTGAAGCTTTTGAATGCATAGGTTTTAGTTTTGGCTTTTGGGGACTGGGAATAGTTTCCGTTATCCATCTTATTAAATTTTACTTCAACTAACTCTTACAAAACTTACTTTTATATCACGGAAGGATGAGTCTACCAATCACTTCATCAAAGTGGAATTTATGTCTTTTAGGATTTCTTTTGATGATTTATTAAGGGGAAGTGTGAAAATTAAGGAAAGAGGGAGAATTGTGGTTCTATTTCGTTTCAACTGGTTTCGGCTATCTAGAATGAGGACTGTCTATAGTGTATGCTAGATAACTCCAAACATAACTTATTTTCAAAACGAACAAGGTATAACAATTATATATTTTGATCAGGTCACATATTATTGTTGGAGAAATCCTTTTCAGAGTTGTTGAAATTTTCTTTCACGATTTTAACTGGAGTGAAAATTAGTATTTTCTAAGGTGGGCAAATGAAGATTTTATGATCCTTCTTAAAAAAATTTCCCACGAAATGGACACTGCTTTCCTTTAACAAGAAGCAATAAATAAAAAAAGTCAGTTTCAAAATGTTGAGAGAATAAAAGAGACTAATGCTCAAAGATACAAATTTCAGGAGAGAATGAGAAAAGAACTGAACAAAATACAAAAAGAACCATTACAAACCCATCAAAGCACAAATTACAGAGTTGAGTTGAGACACTTTAATCAAGCAAGAAGTTGCTAGGAAGGAAGGATCAAAATTTAGCTGTGATTTATCCTTGTGGACACCATAGAAATTAAGAAAATGTTGTTCCTTTTTTTTTTTTTTTGTGTCAGTATGTGTGTTGGGAGGGGGGNNNNGGGGGGGAGGATAATGTACCAGACACTGAGGATTGAGAAGAGGTTAATAAAGTTATTGGCGATAGGAGGAAGGCTTGGAAAGACAACTAGAGAAGAAAAATTGGAGACGGGGTGATCAGTAAAATTATGAAGAAATTTGTGAGATGCGGAGAATAGAAAAACAATGGAGCAGAAAAATTGGAAAACTGATTAAAGGAAACATTGCAAGTCTTTCCATTAATGATTTCAAGTGGGAAATGGCTAATATTCTTACTAACACTCTGTTTTATAGTGGTTGGTACAACATTTGGTAACCTTTGAAGAACATGATTGATGAGGACAACATGCTGAATCTAGTTCGTCTTGGTATGGTATTTCATAAATTTGTGAGCAAAGCCTGCCCCACACGACCCTCTCTCCCCATAGTTGCCTCATTTCCGAGTTTGGATTTGACTAATCTAGTCACCTCTTCATTCACTGTCACTTTGCAAAGAGGTTTTAGAAGGAGATCTTCCTTTCTTTTGGTTGGTTCACTGCCCAACTGCCCAACCAAAAGACACTTATCACGCTCTCACTTATACTCACCGGTTATCCCTTTACAAAGCAAAAGAAAATCATGTGGATGCATAGATTCGTGCTTTCTTATGGATCACATGGAAGGGGAGAAACAAGTGCCTCTTCAAAGATAAGGGAAGCTCTTTTGATTGATATTTTGGAGTCTGATTCTATGTTCTCAATATCTTTCATGCTATGAGTTGGTGTAAATGCACATCTTTCTTTAATACATACACCCTTTTTTCCCTTTTTGACCAATTGGAGAAATCTTTCACAACTCCTCTAGCTGTCTTCAGCCCTTTTTTGTTCAAGGCAGACTATGAAATATTTGGGAAGAAAATTTCTATTAAGCTCTCTTTTTTTTCTTATTTAAATAAGTAGATTCTCACCTTTTTCACTTTTTTCTTTATATCAGTGAGTATCGATGTGAACCTATGCACACCTTGACTGATCTCACAGTATGACCTGTCTGATTCTATAATATTTGGGTGTTAAAACAAACTCATAGGATATTAATTACTAAGTAAATGACCACCATGGACTCAACGACCTCTAAGCTCTTTATTGAAACAATGTCTCTTTTTTACCACTAGGTTAACCATGATTGTTTATCCCGTTTCTTTTATGAAAGACCGTCAAGTTGCTGATATTCTTATGCATTCAGGGAGCTCTCTATCTCGTTCATTTGGGTTCATCTAGTACGACAGAGAAACAAAGGTTTTGACACTTTGTTCTTTACTAGAAGAGGTTTTTCTTGTAGATCATTGTTCCATTTTTTTTACTGGATTCCTCTCCTAAGGATTTGATTTTCTTGCTCATTTGGAAAGTGGATCCTAAAATAAGGTGAAGTTCTTGTTTCGGGATAAAAGGGAGAGTTTTGTGATGATTTTTCCCCTTCAATTTGTTGATAATGTGGTGAGAAGGGGCTGAGATACTTCAGAAGGTTATGTGGTTGGTTATATACTCATGTGGTCACTATACCCTTACATGTACCATTTATTCTTGTTCAAGAACCATTGATCAATACGGAACAGAATACAATGCTGAATGTCTTAGCTGTTTTATCATTGCTCTCCCATTTTCACCTTAGGCTCGAGATGGGGATGTCCACCTTCGGACTTGTTCGTCCATAATTTTTCTGTTTATCTTTTTTTCTAGACAACCCACCCTTCTCGGGAGTCTGATTCTATGTTCTCAATATGGAATGTAAAAATTCTGAATAACGTAGAGTTCTTTGGGTGACAAATTTTACATGGATTAGTTGGATCGGATCTTGACCAGAGAACCATAGGGAACCTAGATCCGATCATGTGAATTTGTGAGTATACTCTGCAGTCTGGCATGAGTTCTTTGAGGTGTTCAATTTTGAGCTTTGTTTGCTCTTAAAGTTGCAGGAAGTCAGGCGAGTAGCTTATCGTCCATATGCCATTTTGTGAAAAGATATGGCTGTTTTTGTGGCAGGCTTGGATGTTTGCTATTTTATGGGGGTTGAGGGGTGAAGAAATAAAAGAATTTTCATTGGATGTGAGGATTCTTATAGTGCGAATTTTGTTCTCTTGCTAGATTCTCTAGGCTTTGATTTTCAAGTTTCTTTTTTTTTTTTTTTCCCTCCGTCGTTATGTCATATTTCTCTTATTGGAACCCTTTTTTGTAGTTTGACTCCCTTTCCTGAGTTTTAAATTTTGCAAGTCTTTCTGTTCTTTTTTTTTTTTTTTTTTTTTTTTCTCTTCTTAATGAAAGTTAAGTTGATTATTTTGAGAGATGCAAATTCGTATCCAAATTAACTAACTTTTGCTCCAATATAAGTTTCCAAGCTCCCTGACTTCATCGCAAAAGGATTATGTAATATTGTTGTTTGTGCATTGAGATTTGTGGTATATGCCATAGGACCACACTCTTGGGAATTTGCTTTAATGGAGTTCTGAAGATTGAAGTCTTTCAACAGTATGAAGCTACCGCCTTGTTGTGTTGCCTTGACCTCGCATCCATGAGCTGCAAGACAAGTTTGGGGTCAAGGAGCGAGCATGCTAGCTGTTGGTTCATCTGTTTAGTTGCATCGTTGGTTCATCTTGCATAAAGAATATCGTATATTTCCGACCTGCTATCATGAAAGATACAACTTAACAGAGGCCTTCACTGTTGCAAGATGAATGCCATATTTGCATGAACCTTCATAGACATTCTAGTAGTGAAACTGACTTAATTATTCAGGAATGTAGCTTCCTTTCACTTGAACTTAATCCTTATTCAGGAGTGTAGCTTGCTTTCCCTTTGATTGTAATTGCAACTTTGGCCTAATATTGGTCTTTTTTTATTTTTTTATTATTATTATCTATTTATTTATTTTTCTAAATACAGTTGC

mRNA sequence

ATGGCGCTTAAGGTTCAAGGGGACTCAGCTCTGAATCGGACCACACTCTTGGGAATTTGCTTTAATGGAGTTCTGAAGATTGAAGTCTTTCAACAGTATGAAGCTACCGCCTTGTTGTGTTGCCTTGACCTCGCATCCATGAGCTGCAAGACAAGTTTGGGGTCAAGGAGCGAGCATGCTAGCTGTTGGTTCATCTGTTTAGTTGCATCGTTGGTTCATCTTGCATAA

Coding sequence (CDS)

ATGGCGCTTAAGGTTCAAGGGGACTCAGCTCTGAATCGGACCACACTCTTGGGAATTTGCTTTAATGGAGTTCTGAAGATTGAAGTCTTTCAACAGTATGAAGCTACCGCCTTGTTGTGTTGCCTTGACCTCGCATCCATGAGCTGCAAGACAAGTTTGGGGTCAAGGAGCGAGCATGCTAGCTGTTGGTTCATCTGTTTAGTTGCATCGTTGGTTCATCTTGCATAA

Protein sequence

MALKVQGDSALNRTTLLGICFNGVLKIEVFQQYEATALLCCLDLASMSCKTSLGSRSEHASCWFICLVASLVHLA*
Homology
[Close]
BLAST of Csa3G259710 vs. TrEMBL
Match: A0A0A0LCD7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G259710 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 9.1e-35
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1 

Query: 1  MALKVQGDSALNRTTLLGICFNGVLKIEVFQQYEATALLCCLDLASMSCKTSLGSRSEHA 60
          MALKVQGDSALNRTTLLGICFNGVLKIEVFQQYEATALLCCLDLASMSCKTSLGSRSEHA
Sbjct: 1  MALKVQGDSALNRTTLLGICFNGVLKIEVFQQYEATALLCCLDLASMSCKTSLGSRSEHA 60

Query: 61 SCWFICLVASLVHLA 76
          SCWFICLVASLVHLA
Sbjct: 61 SCWFICLVASLVHLA 75

[Close]
BLAST of Csa3G259710 vs. NCBI nr
Match: gi|700202588|gb|KGN57721.1| (hypothetical protein Csa_3G259710 [Cucumis sativus])

HSP 1 Score: 153.7 bits (387), Expect = 1.3e-34
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1 

Query: 1  MALKVQGDSALNRTTLLGICFNGVLKIEVFQQYEATALLCCLDLASMSCKTSLGSRSEHA 60
          MALKVQGDSALNRTTLLGICFNGVLKIEVFQQYEATALLCCLDLASMSCKTSLGSRSEHA
Sbjct: 1  MALKVQGDSALNRTTLLGICFNGVLKIEVFQQYEATALLCCLDLASMSCKTSLGSRSEHA 60

Query: 61 SCWFICLVASLVHLA 76
          SCWFICLVASLVHLA
Sbjct: 61 SCWFICLVASLVHLA 75

The following BLAST results are available for this feature:
BLAST of Csa3G259710 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LCD7_CUCSA9.1e-35100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G259710 PE=4 SV=1[more]
BLAST of Csa3G259710 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202588|gb|KGN57721.1|1.3e-34100.00hypothetical protein Csa_3G259710 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU142230cucumber EST collection version 3.0transcribed_cluster
CU152736cucumber EST collection version 3.0transcribed_cluster
CU158167cucumber EST collection version 3.0transcribed_cluster
CU176187cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G259710.1Csa3G259710.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU142230CU142230transcribed_cluster
CU158167CU158167transcribed_cluster
CU152736CU152736transcribed_cluster
CU176187CU176187transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa3G259710ClCG05G012060Watermelon (Charleston Gray)cuwcgB233
Csa3G259710Cla97C05G093970Watermelon (97103) v2cuwmbB218
Csa3G259710CSPI03G20400Wild cucumber (PI 183967)cpicuB120
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G259710Silver-seed gourdcarcuB0513
Csa3G259710Silver-seed gourdcarcuB0780
Csa3G259710Wax gourdcuwgoB271
Csa3G259710Cucumber (Gy14) v1cgycuB003
Csa3G259710Cucurbita maxima (Rimu)cmacuB242
Csa3G259710Cucurbita maxima (Rimu)cmacuB455
Csa3G259710Cucurbita moschata (Rifu)cmocuB229
Csa3G259710Cucurbita moschata (Rifu)cmocuB442
Csa3G259710Melon (DHL92) v3.5.1cumeB161
Csa3G259710Watermelon (97103) v1cuwmB247
Csa3G259710Cucurbita pepo (Zucchini)cpecuB547
Csa3G259710Cucurbita pepo (Zucchini)cpecuB600
Csa3G259710Bottle gourd (USVL1VR-Ls)culsiB212
Csa3G259710Cucumber (Gy14) v2cgybcuB109
Csa3G259710Melon (DHL92) v3.6.1cumedB228