Csa3G258100 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G258100
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 15978157 .. 15978339 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTCTTCAAGTTCATGTCTTCAAAAGAACAACAAAGATAATGCCAAAGCTCCTCGCCTACGACGACTGACTGTGAATGCCCGTCGTCATTCACGACCACCTCGAAGAGCCCGCAACAGTAAAATCAACCCTGCTCCTCCGCCTAAGAAGAGCACCGGCGGCGGTGGTCAGACAAACTAA

mRNA sequence

ATGGAGTCTTCAAGTTCATGTCTTCAAAAGAACAACAAAGATAATGCCAAAGCTCCTCGCCTACGACGACTGACTGTGAATGCCCGTCGTCATTCACGACCACCTCGAAGAGCCCGCAACAGTAAAATCAACCCTGCTCCTCCGCCTAAGAAGAGCACCGGCGGCGGTGGTCAGACAAACTAA

Coding sequence (CDS)

ATGGAGTCTTCAAGTTCATGTCTTCAAAAGAACAACAAAGATAATGCCAAAGCTCCTCGCCTACGACGACTGACTGTGAATGCCCGTCGTCATTCACGACCACCTCGAAGAGCCCGCAACAGTAAAATCAACCCTGCTCCTCCGCCTAAGAAGAGCACCGGCGGCGGTGGTCAGACAAACTAA

Protein sequence

MESSSSCLQKNNKDNAKAPRLRRLTVNARRHSRPPRRARNSKINPAPPPKKSTGGGGQTN*
Homology
[Close]
BLAST of Csa3G258100 vs. TrEMBL
Match: A0A0A0L7D2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G258100 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.3e-26
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 

Query: 1  MESSSSCLQKNNKDNAKAPRLRRLTVNARRHSRPPRRARNSKINPAPPPKKSTGGGGQTN 60
          MESSSSCLQKNNKDNAKAPRLRRLTVNARRHSRPPRRARNSKINPAPPPKKSTGGGGQTN
Sbjct: 1  MESSSSCLQKNNKDNAKAPRLRRLTVNARRHSRPPRRARNSKINPAPPPKKSTGGGGQTN 60

[Close]
BLAST of Csa3G258100 vs. TrEMBL
Match: A0A0A0KAN3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G020130 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.3e-15
Identity = 49/67 (73.13%), Postives = 53/67 (79.10%), Query Frame = 1 

Query: 1  MESSSSCLQKNNKDNAKAPRLRRLTVNA-------RRHSRPPRRARNSKINPAPPPKKST 60
          MESSSS L+KNN DNAKAPRLR L++NA       RRHSRP +R RNSK N APPPKKST
Sbjct: 1  MESSSSSLRKNNNDNAKAPRLR-LSMNAGDGTQINRRHSRPLQRNRNSKTNRAPPPKKST 60

[Close]
BLAST of Csa3G258100 vs. NCBI nr
Match: gi|700202575|gb|KGN57708.1| (hypothetical protein Csa_3G258100 [Cucumis sativus])

HSP 1 Score: 126.3 bits (316), Expect = 1.8e-26
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 

Query: 1  MESSSSCLQKNNKDNAKAPRLRRLTVNARRHSRPPRRARNSKINPAPPPKKSTGGGGQTN 60
          MESSSSCLQKNNKDNAKAPRLRRLTVNARRHSRPPRRARNSKINPAPPPKKSTGGGGQTN
Sbjct: 1  MESSSSCLQKNNKDNAKAPRLRRLTVNARRHSRPPRRARNSKINPAPPPKKSTGGGGQTN 60

[Close]
BLAST of Csa3G258100 vs. NCBI nr
Match: gi|700190695|gb|KGN45899.1| (hypothetical protein Csa_6G020130 [Cucumis sativus])

HSP 1 Score: 89.7 bits (221), Expect = 1.9e-15
Identity = 49/67 (73.13%), Postives = 53/67 (79.10%), Query Frame = 1 

Query: 1  MESSSSCLQKNNKDNAKAPRLRRLTVNA-------RRHSRPPRRARNSKINPAPPPKKST 60
          MESSSS L+KNN DNAKAPRLR L++NA       RRHSRP +R RNSK N APPPKKST
Sbjct: 1  MESSSSSLRKNNNDNAKAPRLR-LSMNAGDGTQINRRHSRPLQRNRNSKTNRAPPPKKST 60

The following BLAST results are available for this feature:
BLAST of Csa3G258100 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L7D2_CUCSA1.3e-26100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G258100 PE=4 SV=1[more]
A0A0A0KAN3_CUCSA1.3e-1573.13Uncharacterized protein OS=Cucumis sativus GN=Csa_6G020130 PE=4 SV=1[more]
BLAST of Csa3G258100 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202575|gb|KGN57708.1|1.8e-26100.00hypothetical protein Csa_3G258100 [Cucumis sativus][more]
gi|700190695|gb|KGN45899.1|1.9e-1573.13hypothetical protein Csa_6G020130 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G258100.1Csa3G258100.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa3G258100CSPI03G20260Wild cucumber (PI 183967)cpicuB120
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G258100Wax gourdcuwgoB271
Csa3G258100Cucumber (Gy14) v1cgycuB003
Csa3G258100Watermelon (Charleston Gray)cuwcgB225
Csa3G258100Cucurbita maxima (Rimu)cmacuB242
Csa3G258100Cucurbita moschata (Rifu)cmocuB229
Csa3G258100Melon (DHL92) v3.5.1cumeB161
Csa3G258100Watermelon (Charleston Gray)cuwcgB233
Csa3G258100Watermelon (97103) v1cuwmB236
Csa3G258100Watermelon (97103) v1cuwmB247
Csa3G258100Cucurbita pepo (Zucchini)cpecuB600
Csa3G258100Bottle gourd (USVL1VR-Ls)culsiB212
Csa3G258100Cucumber (Gy14) v2cgybcuB109
Csa3G258100Melon (DHL92) v3.6.1cumedB228
Csa3G258100Silver-seed gourdcarcuB0513
Csa3G258100Watermelon (97103) v2cuwmbB207
Csa3G258100Watermelon (97103) v2cuwmbB218