CSPI03G20260 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G20260
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr3 : 16084781 .. 16084963 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTCTTCAAGTTCATGTCTTCAAAAGAACAACAAAGATAATGCCAAAGCTCCTCGCCTACGACGACTGACTGTGAATGCCCTTCGTCGTTCACGACCACCTCGAAGAACCCGCAACAGTAAAATCAACCCTGCTCCTCCGCCTAAGAAGAGCACCGGCGGCGGTGGTCAGACAAACTAA

mRNA sequence

ATGGAGTCTTCAAGTTCATGTCTTCAAAAGAACAACAAAGATAATGCCAAAGCTCCTCGCCTACGACGACTGACTGTGAATGCCCTTCGTCGTTCACGACCACCTCGAAGAACCCGCAACAGTAAAATCAACCCTGCTCCTCCGCCTAAGAAGAGCACCGGCGGCGGTGGTCAGACAAACTAA

Coding sequence (CDS)

ATGGAGTCTTCAAGTTCATGTCTTCAAAAGAACAACAAAGATAATGCCAAAGCTCCTCGCCTACGACGACTGACTGTGAATGCCCTTCGTCGTTCACGACCACCTCGAAGAACCCGCAACAGTAAAATCAACCCTGCTCCTCCGCCTAAGAAGAGCACCGGCGGCGGTGGTCAGACAAACTAA
Homology
[Close]
BLAST of CSPI03G20260 vs. TrEMBL
Match: A0A0A0L7D2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G258100 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 2.1e-21
Identity = 57/60 (95.00%), Postives = 57/60 (95.00%), Query Frame = 1 

Query: 1  MESSSSCLQKNNKDNAKAPRLRRLTVNALRRSRPPRRTRNSKINPAPPPKKSTGGGGQTN 60
          MESSSSCLQKNNKDNAKAPRLRRLTVNA R SRPPRR RNSKINPAPPPKKSTGGGGQTN
Sbjct: 1  MESSSSCLQKNNKDNAKAPRLRRLTVNARRHSRPPRRARNSKINPAPPPKKSTGGGGQTN 60

[Close]
BLAST of CSPI03G20260 vs. TrEMBL
Match: A0A0A0KAN3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G020130 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.5e-11
Identity = 47/67 (70.15%), Postives = 51/67 (76.12%), Query Frame = 1 

Query: 1  MESSSSCLQKNNKDNAKAPRLRRLTVNA-------LRRSRPPRRTRNSKINPAPPPKKST 60
          MESSSS L+KNN DNAKAPRLR L++NA        R SRP +R RNSK N APPPKKST
Sbjct: 1  MESSSSSLRKNNNDNAKAPRLR-LSMNAGDGTQINRRHSRPLQRNRNSKTNRAPPPKKST 60

[Close]
BLAST of CSPI03G20260 vs. NCBI nr
Match: gi|700202575|gb|KGN57708.1| (hypothetical protein Csa_3G258100 [Cucumis sativus])

HSP 1 Score: 109.0 bits (271), Expect = 3.0e-21
Identity = 57/60 (95.00%), Postives = 57/60 (95.00%), Query Frame = 1 

Query: 1  MESSSSCLQKNNKDNAKAPRLRRLTVNALRRSRPPRRTRNSKINPAPPPKKSTGGGGQTN 60
          MESSSSCLQKNNKDNAKAPRLRRLTVNA R SRPPRR RNSKINPAPPPKKSTGGGGQTN
Sbjct: 1  MESSSSCLQKNNKDNAKAPRLRRLTVNARRHSRPPRRARNSKINPAPPPKKSTGGGGQTN 60

[Close]
BLAST of CSPI03G20260 vs. NCBI nr
Match: gi|700190695|gb|KGN45899.1| (hypothetical protein Csa_6G020130 [Cucumis sativus])

HSP 1 Score: 75.5 bits (184), Expect = 3.6e-11
Identity = 47/67 (70.15%), Postives = 51/67 (76.12%), Query Frame = 1 

Query: 1  MESSSSCLQKNNKDNAKAPRLRRLTVNA-------LRRSRPPRRTRNSKINPAPPPKKST 60
          MESSSS L+KNN DNAKAPRLR L++NA        R SRP +R RNSK N APPPKKST
Sbjct: 1  MESSSSSLRKNNNDNAKAPRLR-LSMNAGDGTQINRRHSRPLQRNRNSKTNRAPPPKKST 60

The following BLAST results are available for this feature:
BLAST of CSPI03G20260 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI03G20260 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L7D2_CUCSA2.1e-2195.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G258100 PE=4 SV=1[more]
A0A0A0KAN3_CUCSA2.5e-1170.15Uncharacterized protein OS=Cucumis sativus GN=Csa_6G020130 PE=4 SV=1[more]
BLAST of CSPI03G20260 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI03G20260 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202575|gb|KGN57708.1|3.0e-2195.00hypothetical protein Csa_3G258100 [Cucumis sativus][more]
gi|700190695|gb|KGN45899.1|3.6e-1170.15hypothetical protein Csa_6G020130 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G20260.1CSPI03G20260.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI03G20260Csa3G258100Cucumber (Chinese Long) v2cpicuB120
CSPI03G20260CsaV3_3G020230Cucumber (Chinese Long) v3cpicucB144
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI03G20260Watermelon (97103) v2cpiwmbB212
CSPI03G20260Watermelon (97103) v2cpiwmbB224
CSPI03G20260Wax gourdcpiwgoB271
CSPI03G20260Cucumber (Gy14) v1cgycpiB003
CSPI03G20260Cucurbita maxima (Rimu)cmacpiB244
CSPI03G20260Cucurbita moschata (Rifu)cmocpiB232
CSPI03G20260Melon (DHL92) v3.5.1cpimeB243
CSPI03G20260Watermelon (Charleston Gray)cpiwcgB229
CSPI03G20260Watermelon (Charleston Gray)cpiwcgB241
CSPI03G20260Watermelon (97103) v1cpiwmB234
CSPI03G20260Watermelon (97103) v1cpiwmB246
CSPI03G20260Cucurbita pepo (Zucchini)cpecpiB602
CSPI03G20260Bottle gourd (USVL1VR-Ls)cpilsiB210
CSPI03G20260Melon (DHL92) v3.6.1cpimedB229
CSPI03G20260Cucumber (Gy14) v2cgybcpiB110
CSPI03G20260Silver-seed gourdcarcpiB0520