Csa3G253530 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G253530
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr3 : 15815184 .. 15815627 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCAGATTCCGGCAATCAATAGAAACCCTTTCGAAGGAAAAAAAAGAAAAGAAAAGAATGACTGGTGCTGTACTTTTCGACTGGCCGGCGTACTCCTCGCCGGAGAAAAAAGAGCAAACAAGCTCCAAAATTCAAATTCTGTAGGAGAAGAGCAACAGCCGCGCATGGGGAAAGACGCAAAAGATTTATGGAGGAAAAAGAAAAACAGTGGCAATAAAGAATTTGAAGTTAATGCTGTTTGTTCTCCCAAAATTCCATCTGTCAACAGCTCCCTAAATGAATTAACTGCCGCCAAATCTGTAGGAGAAGAACAACAGCCGCGCGTGGGGAAAGAGGCAAAGGATTTATGGAGGAAAGAGAAAAACGGTGGCAATAAAGAATCTGATGTTAATGCTGTTTTTTTTTTCCAAAATTCCATTTGCCAACAGCTCCCTAAATGA

mRNA sequence

ATGGAGCAGATTCCGGCAATCAATAGAAACCCTTTCGAAGGAAAAAAAAGAAAAGAAAAGAATGACTGGTGCTGTACTTTTCGACTGGCCGGCGTACTCCTCGCCGGAGAAAAAAGAGCAAACAAGCTCCAAAATTCAAATTCTGTAGGAGAAGAGCAACAGCCGCGCATGGGGAAAGACGCAAAAGATTTATGGAGGAAAAAGAAAAACAGTGGCAATAAAGAATTTGAAGTTAATGCTGTTTGTTCTCCCAAAATTCCATCTGTCAACAGCTCCCTAAATGAATTAACTGCCGCCAAATCTGTAGGAGAAGAACAACAGCCGCGCGTGGGGAAAGAGGCAAAGGATTTATGGAGGAAAGAGAAAAACGGTGGCAATAAAGAATCTGATGTTAATGCTGTTTTTTTTTTCCAAAATTCCATTTGCCAACAGCTCCCTAAATGA

Coding sequence (CDS)

ATGGAGCAGATTCCGGCAATCAATAGAAACCCTTTCGAAGGAAAAAAAAGAAAAGAAAAGAATGACTGGTGCTGTACTTTTCGACTGGCCGGCGTACTCCTCGCCGGAGAAAAAAGAGCAAACAAGCTCCAAAATTCAAATTCTGTAGGAGAAGAGCAACAGCCGCGCATGGGGAAAGACGCAAAAGATTTATGGAGGAAAAAGAAAAACAGTGGCAATAAAGAATTTGAAGTTAATGCTGTTTGTTCTCCCAAAATTCCATCTGTCAACAGCTCCCTAAATGAATTAACTGCCGCCAAATCTGTAGGAGAAGAACAACAGCCGCGCGTGGGGAAAGAGGCAAAGGATTTATGGAGGAAAGAGAAAAACGGTGGCAATAAAGAATCTGATGTTAATGCTGTTTTTTTTTTCCAAAATTCCATTTGCCAACAGCTCCCTAAATGA

Protein sequence

MEQIPAINRNPFEGKKRKEKNDWCCTFRLAGVLLAGEKRANKLQNSNSVGEEQQPRMGKDAKDLWRKKKNSGNKEFEVNAVCSPKIPSVNSSLNELTAAKSVGEEQQPRVGKEAKDLWRKEKNGGNKESDVNAVFFFQNSICQQLPK*

Homology

[Close]

BLAST of Csa3G253530 vs. TrEMBL
Match: A0A0A0LCB6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G253530 PE=4 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 1.1e-79
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 1


Query: 1   MEQIPAINRNPFEGKKRKEKNDWCCTFRLAGVLLAGEKRANKLQNSNSVGEEQQPRMGKD 60
           MEQIPAINRNPFEGKKRKEKNDWCCTFRLAGVLLAGEKRANKLQNSNSVGEEQQPRMGKD
Sbjct: 1   MEQIPAINRNPFEGKKRKEKNDWCCTFRLAGVLLAGEKRANKLQNSNSVGEEQQPRMGKD 60

Query: 61  AKDLWRKKKNSGNKEFEVNAVCSPKIPSVNSSLNELTAAKSVGEEQQPRVGKEAKDLWRK 120
           AKDLWRKKKNSGNKEFEVNAVCSPKIPSVNSSLNELTAAKSVGEEQQPRVGKEAKDLWRK
Sbjct: 61  AKDLWRKKKNSGNKEFEVNAVCSPKIPSVNSSLNELTAAKSVGEEQQPRVGKEAKDLWRK 120

Query: 121 EKNGGNKESDVNAVFFFQNSICQQLPK 148
           EKNGGNKESDVNAVFFFQNSICQQLPK
Sbjct: 121 EKNGGNKESDVNAVFFFQNSICQQLPK 147

[Close]

BLAST of Csa3G253530 vs. TrEMBL
Match: A0A0A0L3L4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G437510 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 6.5e-45
Identity = 100/134 (74.63%), Postives = 106/134 (79.10%), Query Frame = 1


Query: 1   MEQIPAINRNPFEGKKRKEKNDWCCTFRLAGVLLAGEKRANKLQNSNSVGEEQQPRMGKD 60
           MEQIPAINRNPFEGKK          F  +   L  +K  NK QNSNSVG+ QQPRMGK+
Sbjct: 1   MEQIPAINRNPFEGKKSMAG---AVFFDRSAYSLPEKKEHNKRQNSNSVGD-QQPRMGKE 60

Query: 61  AKDLWRKKKNSGNKEFEVNAVCSPKIPSVNSSLNELTAAKSVGEEQQPRVGKEAKDLWRK 120
           AKDLWRK+KNSGNKE EVNA CSPKIPSVNSSLNEL A  SVGEEQQPRVGKEAKDLWRK
Sbjct: 61  AKDLWRKEKNSGNKESEVNAFCSPKIPSVNSSLNELIATNSVGEEQQPRVGKEAKDLWRK 120

Query: 121 EKNGGNKESDVNAV 135
           EKN GNK+S VNAV
Sbjct: 121 EKNSGNKKSKVNAV 130

[Close]

BLAST of Csa3G253530 vs. TrEMBL
Match: A0A0A0L3L4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G437510 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.2e-16
Identity = 50/83 (60.24%), Postives = 60/83 (72.29%), Query Frame = 1


Query: 14  GKKRKEKNDWCCTFRLAGVLLAGEKRANKLQNSNSVGEEQQPRMGKDAKDLWRKKKNSGN 73
           G K  E N +C   ++  V        N+L  +NSVGEEQQPR+GK+AKDLWRK+KNSGN
Sbjct: 68  GNKESEVNAFCSP-KIPSV----NSSLNELIATNSVGEEQQPRVGKEAKDLWRKEKNSGN 127

Query: 74  KEFEVNAVCSPKIPSVNSSLNEL 97
           K+ +VNAVCS KIP VNSSLNEL
Sbjct: 128 KKSKVNAVCSSKIPFVNSSLNEL 145

[Close]

BLAST of Csa3G253530 vs. NCBI nr
Match: gi|700202563|gb|KGN57696.1| (hypothetical protein Csa_3G253530 [Cucumis sativus])

HSP 1 Score: 303.9 bits (777), Expect = 1.5e-79
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 1


Query: 1   MEQIPAINRNPFEGKKRKEKNDWCCTFRLAGVLLAGEKRANKLQNSNSVGEEQQPRMGKD 60
           MEQIPAINRNPFEGKKRKEKNDWCCTFRLAGVLLAGEKRANKLQNSNSVGEEQQPRMGKD
Sbjct: 1   MEQIPAINRNPFEGKKRKEKNDWCCTFRLAGVLLAGEKRANKLQNSNSVGEEQQPRMGKD 60

Query: 61  AKDLWRKKKNSGNKEFEVNAVCSPKIPSVNSSLNELTAAKSVGEEQQPRVGKEAKDLWRK 120
           AKDLWRKKKNSGNKEFEVNAVCSPKIPSVNSSLNELTAAKSVGEEQQPRVGKEAKDLWRK
Sbjct: 61  AKDLWRKKKNSGNKEFEVNAVCSPKIPSVNSSLNELTAAKSVGEEQQPRVGKEAKDLWRK 120

Query: 121 EKNGGNKESDVNAVFFFQNSICQQLPK 148
           EKNGGNKESDVNAVFFFQNSICQQLPK
Sbjct: 121 EKNGGNKESDVNAVFFFQNSICQQLPK 147

[Close]

BLAST of Csa3G253530 vs. NCBI nr
Match: gi|700199573|gb|KGN54731.1| (hypothetical protein Csa_4G437510 [Cucumis sativus])

HSP 1 Score: 188.3 bits (477), Expect = 9.3e-45
Identity = 100/134 (74.63%), Postives = 106/134 (79.10%), Query Frame = 1


Query: 1   MEQIPAINRNPFEGKKRKEKNDWCCTFRLAGVLLAGEKRANKLQNSNSVGEEQQPRMGKD 60
           MEQIPAINRNPFEGKK          F  +   L  +K  NK QNSNSVG+ QQPRMGK+
Sbjct: 1   MEQIPAINRNPFEGKKSMAG---AVFFDRSAYSLPEKKEHNKRQNSNSVGD-QQPRMGKE 60

Query: 61  AKDLWRKKKNSGNKEFEVNAVCSPKIPSVNSSLNELTAAKSVGEEQQPRVGKEAKDLWRK 120
           AKDLWRK+KNSGNKE EVNA CSPKIPSVNSSLNEL A  SVGEEQQPRVGKEAKDLWRK
Sbjct: 61  AKDLWRKEKNSGNKESEVNAFCSPKIPSVNSSLNELIATNSVGEEQQPRVGKEAKDLWRK 120

Query: 121 EKNGGNKESDVNAV 135
           EKN GNK+S VNAV
Sbjct: 121 EKNSGNKKSKVNAV 130

[Close]

BLAST of Csa3G253530 vs. NCBI nr
Match: gi|700199573|gb|KGN54731.1| (hypothetical protein Csa_4G437510 [Cucumis sativus])

HSP 1 Score: 93.6 bits (231), Expect = 3.1e-16
Identity = 50/83 (60.24%), Postives = 60/83 (72.29%), Query Frame = 1


Query: 14  GKKRKEKNDWCCTFRLAGVLLAGEKRANKLQNSNSVGEEQQPRMGKDAKDLWRKKKNSGN 73
           G K  E N +C   ++  V        N+L  +NSVGEEQQPR+GK+AKDLWRK+KNSGN
Sbjct: 68  GNKESEVNAFCSP-KIPSV----NSSLNELIATNSVGEEQQPRVGKEAKDLWRKEKNSGN 127

Query: 74  KEFEVNAVCSPKIPSVNSSLNEL 97
           K+ +VNAVCS KIP VNSSLNEL
Sbjct: 128 KKSKVNAVCSSKIPFVNSSLNEL 145

The following BLAST results are available for this feature:

BLAST of Csa3G253530 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCB6_CUCSA	1.1e-79	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G253530 PE=4 SV=1	[more]
A0A0A0L3L4_CUCSA	6.5e-45	74.63	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G437510 PE=4 SV=1	[more]
A0A0A0L3L4_CUCSA	2.2e-16	60.24	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G437510 PE=4 SV=1	[more]

BLAST of Csa3G253530 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202563\|gb\|KGN57696.1\|	1.5e-79	100.00	hypothetical protein Csa_3G253530 [Cucumis sativus]	[more]
gi\|700199573\|gb\|KGN54731.1\|	9.3e-45	74.63	hypothetical protein Csa_4G437510 [Cucumis sativus]	[more]
gi\|700199573\|gb\|KGN54731.1\|	3.1e-16	60.24	hypothetical protein Csa_4G437510 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G253530.1	Csa3G253530.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa3G253530	CSPI03G20120	Wild cucumber (PI 183967)	cpicuB120

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G253530	Melon (DHL92) v3.5.1	cumeB249
Csa3G253530	Watermelon (Charleston Gray)	cuwcgB233
Csa3G253530	Watermelon (97103) v1	cuwmB247
Csa3G253530	Cucurbita pepo (Zucchini)	cpecuB600
Csa3G253530	Bottle gourd (USVL1VR-Ls)	culsiB212
Csa3G253530	Cucumber (Gy14) v2	cgybcuB109
Csa3G253530	Melon (DHL92) v3.6.1	cumedB230
Csa3G253530	Silver-seed gourd	carcuB0513
Csa3G253530	Watermelon (97103) v2	cuwmbB218
Csa3G253530	Wax gourd	cuwgoB291
Csa3G253530	Cucumber (Gy14) v1	cgycuB003
Csa3G253530	Cucurbita maxima (Rimu)	cmacuB242
Csa3G253530	Cucurbita moschata (Rifu)	cmocuB229