CSPI03G20120 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G20120
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr3 : 15917976 .. 15918416 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGCAGATTCCGTCAATCAATAGAAACCCTTTCGAAGGAAAAAAAAGAAAAGAAAAGAATGACTGGTGCTGTACTTTTCGACTGGCCGGCGTACTCCTCGCCGGAGAAAAAAGAGCAAACAAGCTCCAAAATTCAAATTCTGTAGGAGAAGAGCAACAGCCGCGCATGGGGAAAGACGCAAAAGATTTATGGAGGAAAAAGAAAAACAGTGGCAATAAAGAATTTGAAGTTAATGCTGTTTGTTCTCCCAAAATTCCATCTGTCAACAGCTCCCTAAATGAATTAACTGCCGCCAAATCTGTAGGAGAAGAACAACAGCCGCGCGTGGGGAAAGAGGCAAAGGATTTATGGAGGAAAGAGAAAAACGGTGGCAATAAAGAATCTGATGTTAATGCTGTTTTTTTTTTCCAAAATTCCATTTGCCAACAGCTCCCTAAA

mRNA sequence

ATGCAGCAGATTCCGTCAATCAATAGAAACCCTTTCGAAGGAAAAAAAAGAAAAGAAAAGAATGACTGGTGCTGTACTTTTCGACTGGCCGGCGTACTCCTCGCCGGAGAAAAAAGAGCAAACAAGCTCCAAAATTCAAATTCTGTAGGAGAAGAGCAACAGCCGCGCATGGGGAAAGACGCAAAAGATTTATGGAGGAAAAAGAAAAACAGTGGCAATAAAGAATTTGAAGTTAATGCTGTTTGTTCTCCCAAAATTCCATCTGTCAACAGCTCCCTAAATGAATTAACTGCCGCCAAATCTGTAGGAGAAGAACAACAGCCGCGCGTGGGGAAAGAGGCAAAGGATTTATGGAGGAAAGAGAAAAACGGTGGCAATAAAGAATCTGATGTTAATGCTGTTTTTTTTTTCCAAAATTCCATTTGCCAACAGCTCCCTAAA

Coding sequence (CDS)

ATGCAGCAGATTCCGTCAATCAATAGAAACCCTTTCGAAGGAAAAAAAAGAAAAGAAAAGAATGACTGGTGCTGTACTTTTCGACTGGCCGGCGTACTCCTCGCCGGAGAAAAAAGAGCAAACAAGCTCCAAAATTCAAATTCTGTAGGAGAAGAGCAACAGCCGCGCATGGGGAAAGACGCAAAAGATTTATGGAGGAAAAAGAAAAACAGTGGCAATAAAGAATTTGAAGTTAATGCTGTTTGTTCTCCCAAAATTCCATCTGTCAACAGCTCCCTAAATGAATTAACTGCCGCCAAATCTGTAGGAGAAGAACAACAGCCGCGCGTGGGGAAAGAGGCAAAGGATTTATGGAGGAAAGAGAAAAACGGTGGCAATAAAGAATCTGATGTTAATGCTGTTTTTTTTTTCCAAAATTCCATTTGCCAACAGCTCCCTAAA

Homology

[Close]

BLAST of CSPI03G20120 vs. TrEMBL
Match: A0A0A0LCB6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G253530 PE=4 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 7.6e-78
Identity = 145/147 (98.64%), Postives = 147/147 (100.00%), Query Frame = 1


Query: 1   MQQIPSINRNPFEGKKRKEKNDWCCTFRLAGVLLAGEKRANKLQNSNSVGEEQQPRMGKD 60
           M+QIP+INRNPFEGKKRKEKNDWCCTFRLAGVLLAGEKRANKLQNSNSVGEEQQPRMGKD
Sbjct: 1   MEQIPAINRNPFEGKKRKEKNDWCCTFRLAGVLLAGEKRANKLQNSNSVGEEQQPRMGKD 60

Query: 61  AKDLWRKKKNSGNKEFEVNAVCSPKIPSVNSSLNELTAAKSVGEEQQPRVGKEAKDLWRK 120
           AKDLWRKKKNSGNKEFEVNAVCSPKIPSVNSSLNELTAAKSVGEEQQPRVGKEAKDLWRK
Sbjct: 61  AKDLWRKKKNSGNKEFEVNAVCSPKIPSVNSSLNELTAAKSVGEEQQPRVGKEAKDLWRK 120

Query: 121 EKNGGNKESDVNAVFFFQNSICQQLPK 148
           EKNGGNKESDVNAVFFFQNSICQQLPK
Sbjct: 121 EKNGGNKESDVNAVFFFQNSICQQLPK 147

[Close]

BLAST of CSPI03G20120 vs. TrEMBL
Match: A0A0A0L3L4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G437510 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 7.9e-43
Identity = 98/134 (73.13%), Postives = 106/134 (79.10%), Query Frame = 1


Query: 1   MQQIPSINRNPFEGKKRKEKNDWCCTFRLAGVLLAGEKRANKLQNSNSVGEEQQPRMGKD 60
           M+QIP+INRNPFEGKK          F  +   L  +K  NK QNSNSVG+ QQPRMGK+
Sbjct: 1   MEQIPAINRNPFEGKKSMAG---AVFFDRSAYSLPEKKEHNKRQNSNSVGD-QQPRMGKE 60

Query: 61  AKDLWRKKKNSGNKEFEVNAVCSPKIPSVNSSLNELTAAKSVGEEQQPRVGKEAKDLWRK 120
           AKDLWRK+KNSGNKE EVNA CSPKIPSVNSSLNEL A  SVGEEQQPRVGKEAKDLWRK
Sbjct: 61  AKDLWRKEKNSGNKESEVNAFCSPKIPSVNSSLNELIATNSVGEEQQPRVGKEAKDLWRK 120

Query: 121 EKNGGNKESDVNAV 135
           EKN GNK+S VNAV
Sbjct: 121 EKNSGNKKSKVNAV 130

[Close]

BLAST of CSPI03G20120 vs. NCBI nr
Match: gi|700202563|gb|KGN57696.1| (hypothetical protein Csa_3G253530 [Cucumis sativus])

HSP 1 Score: 297.7 bits (761), Expect = 1.1e-77
Identity = 145/147 (98.64%), Postives = 147/147 (100.00%), Query Frame = 1


Query: 1   MQQIPSINRNPFEGKKRKEKNDWCCTFRLAGVLLAGEKRANKLQNSNSVGEEQQPRMGKD 60
           M+QIP+INRNPFEGKKRKEKNDWCCTFRLAGVLLAGEKRANKLQNSNSVGEEQQPRMGKD
Sbjct: 1   MEQIPAINRNPFEGKKRKEKNDWCCTFRLAGVLLAGEKRANKLQNSNSVGEEQQPRMGKD 60

Query: 61  AKDLWRKKKNSGNKEFEVNAVCSPKIPSVNSSLNELTAAKSVGEEQQPRVGKEAKDLWRK 120
           AKDLWRKKKNSGNKEFEVNAVCSPKIPSVNSSLNELTAAKSVGEEQQPRVGKEAKDLWRK
Sbjct: 61  AKDLWRKKKNSGNKEFEVNAVCSPKIPSVNSSLNELTAAKSVGEEQQPRVGKEAKDLWRK 120

Query: 121 EKNGGNKESDVNAVFFFQNSICQQLPK 148
           EKNGGNKESDVNAVFFFQNSICQQLPK
Sbjct: 121 EKNGGNKESDVNAVFFFQNSICQQLPK 147

[Close]

BLAST of CSPI03G20120 vs. NCBI nr
Match: gi|700199573|gb|KGN54731.1| (hypothetical protein Csa_4G437510 [Cucumis sativus])

HSP 1 Score: 181.4 bits (459), Expect = 1.1e-42
Identity = 98/134 (73.13%), Postives = 106/134 (79.10%), Query Frame = 1


Query: 1   MQQIPSINRNPFEGKKRKEKNDWCCTFRLAGVLLAGEKRANKLQNSNSVGEEQQPRMGKD 60
           M+QIP+INRNPFEGKK          F  +   L  +K  NK QNSNSVG+ QQPRMGK+
Sbjct: 1   MEQIPAINRNPFEGKKSMAG---AVFFDRSAYSLPEKKEHNKRQNSNSVGD-QQPRMGKE 60

Query: 61  AKDLWRKKKNSGNKEFEVNAVCSPKIPSVNSSLNELTAAKSVGEEQQPRVGKEAKDLWRK 120
           AKDLWRK+KNSGNKE EVNA CSPKIPSVNSSLNEL A  SVGEEQQPRVGKEAKDLWRK
Sbjct: 61  AKDLWRKEKNSGNKESEVNAFCSPKIPSVNSSLNELIATNSVGEEQQPRVGKEAKDLWRK 120

Query: 121 EKNGGNKESDVNAV 135
           EKN GNK+S VNAV
Sbjct: 121 EKNSGNKKSKVNAV 130

The following BLAST results are available for this feature:

BLAST of CSPI03G20120 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI03G20120 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCB6_CUCSA	7.6e-78	98.64	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G253530 PE=4 SV=1	[more]
A0A0A0L3L4_CUCSA	7.9e-43	73.13	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G437510 PE=4 SV=1	[more]

BLAST of CSPI03G20120 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI03G20120 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202563\|gb\|KGN57696.1\|	1.1e-77	98.64	hypothetical protein Csa_3G253530 [Cucumis sativus]	[more]
gi\|700199573\|gb\|KGN54731.1\|	1.1e-42	73.13	hypothetical protein Csa_4G437510 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G20120.1	CSPI03G20120.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI03G20120	Csa3G253530	Cucumber (Chinese Long) v2	cpicuB120

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G20120	Cucumber (Gy14) v1	cgycpiB003
CSPI03G20120	Cucurbita maxima (Rimu)	cmacpiB244
CSPI03G20120	Cucurbita moschata (Rifu)	cmocpiB232
CSPI03G20120	Melon (DHL92) v3.5.1	cpimeB243
CSPI03G20120	Watermelon (Charleston Gray)	cpiwcgB241
CSPI03G20120	Watermelon (97103) v1	cpiwmB246
CSPI03G20120	Cucurbita pepo (Zucchini)	cpecpiB602
CSPI03G20120	Bottle gourd (USVL1VR-Ls)	cpilsiB210
CSPI03G20120	Melon (DHL92) v3.6.1	cpimedB231
CSPI03G20120	Cucumber (Gy14) v2	cgybcpiB110
CSPI03G20120	Silver-seed gourd	carcpiB0520
CSPI03G20120	Cucumber (Chinese Long) v3	cpicucB144
CSPI03G20120	Watermelon (97103) v2	cpiwmbB224
CSPI03G20120	Wax gourd	cpiwgoB291