Csa3G207910 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G207910
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 14123254 .. 14124091 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGTCAAGAGTTCCCCAAACAACTCCCGACGTCGCTCAATGTGTGTCGGGAGTTTCCAAATAATCATGACGTCGTTCAATATGCGTCGAGAGTTCCCAAACATCTCCTAACACTTACTAGTATTGTTGGGAATTGGCCTCCATGTCACAACGTCTCCCAACACTGCGTCGAAAGTTTTCAAACAAATCTCAACGCTTTAGTTGTGCGTTGTGCGTCGAAAGATACTATATCTCCTACCACTCCAATTGGAATGTCGGGAGATGTCCTATCTCTCAATGACCTTTCTTCCAACTAGAGGGGTAAGAATATGGGTTGAACCCGAATAACTTGGACTACTCAACCCATATTATAAGGGCTGGATTGGGTTGGATTGAAAATTTTGGTTATTTTCGGATTGGGTTGGGTCTCAGATTGGAGGGTTGAAAATTTTAGTTCAACCCAACCCAACCCGAATTAATATAATATAATATAATATATATTATATTTTTTATTTTATTTTATTTAATATTTAAAAACAATTAGGTAGAAAAAGAAATCCAACGCACATTCCTACTTCCTTTCCACTTTCTCTTTCCTGATTCCTCTTTCTCCATTTCACGATTTCTTCTCCTCTCCGCCATTTCTCATCTGAAATTTCACTATCTCAGTTCGTCTTCTTCCTTTCCTCTCCATCGTATCTTAGTTCATCTTCTTCCTCTCCCCTCCTCCGTATCTCACCAGTCGTCTTCGTCTCTGACTTTGCTCATTCGCCTTCGCTTCTGACTTTGGCCATTCGTCTTCACCGTCAGCGTCCTCCCTCTCCTTGTCGTTTGTTTCCTCGTTGTCCGTCTCCTTAG

mRNA sequence

ATGCGTCAAGAGTTCCCCAAACAACTCCCGACGTCGCTCAATGTGTGTCGGGAGTTTCCAAATAATCATGACGTCGTTCAATATGCGTCGAGAGTTCCCAAACATCTCCTAACACTTACTAGTATTGTTGGGAATTGGCCTCCATGTCACAACGTCTCCCAACACTGCGTCGAAAGTTTTCAAACAAATCTCAACGCTTTAGTTGTGCGTTGTGCGTCGAAAGATACTATATCTCCTACCACTCCAATTGGAATGTCGGGAGATTTCGTCTTCTTCCTTTCCTCTCCATCGTATCTTAGTTCATCTTCTTCCTCTCCCCTCCTCCGTATCTCACCAGTCGTCTTCGTCTCTGACTTTGCTCATTCGCCTTCGCTTCTGACTTTGGCCATTCGTCTTCACCGTCAGCGTCCTCCCTCTCCTTGTCGTTTGTTTCCTCGTTGTCCGTCTCCTTAG

Coding sequence (CDS)

ATGCGTCAAGAGTTCCCCAAACAACTCCCGACGTCGCTCAATGTGTGTCGGGAGTTTCCAAATAATCATGACGTCGTTCAATATGCGTCGAGAGTTCCCAAACATCTCCTAACACTTACTAGTATTGTTGGGAATTGGCCTCCATGTCACAACGTCTCCCAACACTGCGTCGAAAGTTTTCAAACAAATCTCAACGCTTTAGTTGTGCGTTGTGCGTCGAAAGATACTATATCTCCTACCACTCCAATTGGAATGTCGGGAGATTTCGTCTTCTTCCTTTCCTCTCCATCGTATCTTAGTTCATCTTCTTCCTCTCCCCTCCTCCGTATCTCACCAGTCGTCTTCGTCTCTGACTTTGCTCATTCGCCTTCGCTTCTGACTTTGGCCATTCGTCTTCACCGTCAGCGTCCTCCCTCTCCTTGTCGTTTGTTTCCTCGTTGTCCGTCTCCTTAG

Protein sequence

MRQEFPKQLPTSLNVCREFPNNHDVVQYASRVPKHLLTLTSIVGNWPPCHNVSQHCVESFQTNLNALVVRCASKDTISPTTPIGMSGDFVFFLSSPSYLSSSSSSPLLRISPVVFVSDFAHSPSLLTLAIRLHRQRPPSPCRLFPRCPSP*
Homology
[Close]
BLAST of Csa3G207910 vs. TrEMBL
Match: A0A0A0LAA6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G207910 PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 3.0e-82
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 1 

Query: 1   MRQEFPKQLPTSLNVCREFPNNHDVVQYASRVPKHLLTLTSIVGNWPPCHNVSQHCVESF 60
           MRQEFPKQLPTSLNVCREFPNNHDVVQYASRVPKHLLTLTSIVGNWPPCHNVSQHCVESF
Sbjct: 1   MRQEFPKQLPTSLNVCREFPNNHDVVQYASRVPKHLLTLTSIVGNWPPCHNVSQHCVESF 60

Query: 61  QTNLNALVVRCASKDTISPTTPIGMSGDFVFFLSSPSYLSSSSSSPLLRISPVVFVSDFA 120
           QTNLNALVVRCASKDTISPTTPIGMSGDFVFFLSSPSYLSSSSSSPLLRISPVVFVSDFA
Sbjct: 61  QTNLNALVVRCASKDTISPTTPIGMSGDFVFFLSSPSYLSSSSSSPLLRISPVVFVSDFA 120

Query: 121 HSPSLLTLAIRLHRQRPPSPCRLFPRCPSP 151
           HSPSLLTLAIRLHRQRPPSPCRLFPRCPSP
Sbjct: 121 HSPSLLTLAIRLHRQRPPSPCRLFPRCPSP 150

[Close]
BLAST of Csa3G207910 vs. NCBI nr
Match: gi|700202409|gb|KGN57542.1| (hypothetical protein Csa_3G207910 [Cucumis sativus])

HSP 1 Score: 312.4 bits (799), Expect = 4.4e-82
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 1 

Query: 1   MRQEFPKQLPTSLNVCREFPNNHDVVQYASRVPKHLLTLTSIVGNWPPCHNVSQHCVESF 60
           MRQEFPKQLPTSLNVCREFPNNHDVVQYASRVPKHLLTLTSIVGNWPPCHNVSQHCVESF
Sbjct: 1   MRQEFPKQLPTSLNVCREFPNNHDVVQYASRVPKHLLTLTSIVGNWPPCHNVSQHCVESF 60

Query: 61  QTNLNALVVRCASKDTISPTTPIGMSGDFVFFLSSPSYLSSSSSSPLLRISPVVFVSDFA 120
           QTNLNALVVRCASKDTISPTTPIGMSGDFVFFLSSPSYLSSSSSSPLLRISPVVFVSDFA
Sbjct: 61  QTNLNALVVRCASKDTISPTTPIGMSGDFVFFLSSPSYLSSSSSSPLLRISPVVFVSDFA 120

Query: 121 HSPSLLTLAIRLHRQRPPSPCRLFPRCPSP 151
           HSPSLLTLAIRLHRQRPPSPCRLFPRCPSP
Sbjct: 121 HSPSLLTLAIRLHRQRPPSPCRLFPRCPSP 150

The following BLAST results are available for this feature:
BLAST of Csa3G207910 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LAA6_CUCSA3.0e-82100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G207910 PE=4 SV=1[more]
BLAST of Csa3G207910 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202409|gb|KGN57542.1|4.4e-82100.00hypothetical protein Csa_3G207910 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G207910.1Csa3G207910.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa3G207910CSPI03G18580Wild cucumber (PI 183967)cpicuB120
Csa3G207910CsGy3G018440Cucumber (Gy14) v2cgybcuB109
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G207910Bottle gourd (USVL1VR-Ls)culsiB189
Csa3G207910Bottle gourd (USVL1VR-Ls)culsiB211
Csa3G207910Cucumber (Gy14) v2cgybcuB307
Csa3G207910Melon (DHL92) v3.6.1cumedB181
Csa3G207910Melon (DHL92) v3.6.1cumedB238
Csa3G207910Silver-seed gourdcarcuB0232
Csa3G207910Silver-seed gourdcarcuB0400
Csa3G207910Silver-seed gourdcarcuB0675
Csa3G207910Watermelon (97103) v2cuwmbB198
Csa3G207910Watermelon (97103) v2cuwmbB215
Csa3G207910Wax gourdcuwgoB283
Csa3G207910Cucumber (Chinese Long) v2cucuB129
Csa3G207910Cucumber (Gy14) v1cgycuB320
Csa3G207910Cucumber (Gy14) v1cgycuB350
Csa3G207910Cucurbita maxima (Rimu)cmacuB128
Csa3G207910Cucurbita maxima (Rimu)cmacuB320
Csa3G207910Cucurbita maxima (Rimu)cmacuB513
Csa3G207910Cucurbita maxima (Rimu)cmacuB697
Csa3G207910Cucurbita moschata (Rifu)cmocuB117
Csa3G207910Cucurbita moschata (Rifu)cmocuB307
Csa3G207910Cucurbita moschata (Rifu)cmocuB504
Csa3G207910Cucurbita moschata (Rifu)cmocuB687
Csa3G207910Melon (DHL92) v3.5.1cumeB166
Csa3G207910Melon (DHL92) v3.5.1cumeB195
Csa3G207910Watermelon (Charleston Gray)cuwcgB215
Csa3G207910Watermelon (Charleston Gray)cuwcgB230
Csa3G207910Watermelon (97103) v1cuwmB243
Csa3G207910Watermelon (97103) v1cuwmB270
Csa3G207910Cucurbita pepo (Zucchini)cpecuB205
Csa3G207910Cucurbita pepo (Zucchini)cpecuB242
Csa3G207910Cucurbita pepo (Zucchini)cpecuB389