Csa3G200190 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G200190
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 13815215 .. 13816230 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTCTCAACAATCCGACCTTAGCTCAGTTGGTAGAGCGGAGGACTGTAGTCGTAAGCACAGATAAATCCTTAGGTCGCTGGTTCGAATCCGGCAGGTCGGATTTTTTTAGCTTTTTTGATCCGTTCTATTAACCTACAATCTCATAATTAATTTAGACTTTTAATTAAATTCTTCAAGTCTTTCTTTCCTTTGCTTTCTCCGGCGTCGGAGTTTTGGAGTTTCGGCGGCATTGTACCAACAATTTCCTACTCTCACCAGTTCACTGCACCATCCAGCCAGTTTTCTTTATCCAAGTTCTCACTTCAGGGCGCTAATCTGATCTCCGAAAACTACTTTCTCTAATTCAGAAATGGTCGGTAGCGAACAATTCTTATTATCCTTGATCTTCGATTCGTTTGAAGTTGTCTATTTGGGTTGTGGTAATCTACCGCTTGAATAATAACGAGATCGTTGCGAATGAAGTTTATTCGTTTTACTTAGCAATGTCCGATATAGCTTACTTTCTTAGTGAAATTGTTGATGCTGATGTAATCGGACGCTTTGAATTCGATTTTCTTTTTCTTTTGCCGATTTTCTTCTTCATTTTGAGATGGTTTGTGGGGGAAGCAAGCTTCACCTTGATGAACTCCTGATTTTGAGATGTGATTTGTTTAGATACTTAATTTTGGAATGAGATTGATCTTTTGTTTTTATTTTGTTTCTTTCTTCTTTTTCTACCTAATTTTCTTTCTGTATGTGTAAACTCAGGCAACTACTTTACGCCTGTATTTGACGTGCATACGAAACACTCTTGAGGCCGCCATGTGCCTTCAGGTATTTGTATCGTTGTCTTGTTGCTGTTTTTTCATTTCATTTTCGTTTGAGTGGTGATTTTTTGCAGTTTGATTTATTATTTCTGTAACCCTCTATTAGGTTCGGGTAAACTTTTCATCCTACGAATTATTTGCCTAACGAACTTCAGGAATGCGATGTTACTGAACGCATTGCTTGTAATTGTTTCTTGAAGACTTAA

mRNA sequence

ATGATTCTCAACAATCCGACCTTAGCTCAGTTGGTAGAGCGGAGGACTGTAGTCGTAAGCACAGATAAATCCTTAGTCTTTCTTTCCTTTGCTTTCTCCGGCGTCGGAGTTTTGGAGTTTCGGCGGCATTGTACCAACAATTTCCTACTCTCACCAGTTCACTGCACCATCCAGCCAGTTTTCTTTATCCAATTGTCTATTTGGGTTGTGGTAATCTACCGCTTGAATAATAACGAGATCGTTGCGAATGAAGTTTATTCGTTTTACTTAGCAATGTCCGATATAGCTTACTTTCTTAGTGAAATTGTTGATGCTGATGCAACTACTTTACGCCTGTATTTGACGTGCATACGAAACACTCTTGAGGCCGCCATGTGCCTTCAGGAATGCGATGTTACTGAACGCATTGCTTGTAATTGTTTCTTGAAGACTTAA

Coding sequence (CDS)

ATGATTCTCAACAATCCGACCTTAGCTCAGTTGGTAGAGCGGAGGACTGTAGTCGTAAGCACAGATAAATCCTTAGTCTTTCTTTCCTTTGCTTTCTCCGGCGTCGGAGTTTTGGAGTTTCGGCGGCATTGTACCAACAATTTCCTACTCTCACCAGTTCACTGCACCATCCAGCCAGTTTTCTTTATCCAATTGTCTATTTGGGTTGTGGTAATCTACCGCTTGAATAATAACGAGATCGTTGCGAATGAAGTTTATTCGTTTTACTTAGCAATGTCCGATATAGCTTACTTTCTTAGTGAAATTGTTGATGCTGATGCAACTACTTTACGCCTGTATTTGACGTGCATACGAAACACTCTTGAGGCCGCCATGTGCCTTCAGGAATGCGATGTTACTGAACGCATTGCTTGTAATTGTTTCTTGAAGACTTAA

Protein sequence

MILNNPTLAQLVERRTVVVSTDKSLVFLSFAFSGVGVLEFRRHCTNNFLLSPVHCTIQPVFFIQLSIWVVVIYRLNNNEIVANEVYSFYLAMSDIAYFLSEIVDADATTLRLYLTCIRNTLEAAMCLQECDVTERIACNCFLKT*
Homology
[Close]
BLAST of Csa3G200190 vs. TrEMBL
Match: A0A0A0L713_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G200190 PE=4 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 2.0e-75
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 1 

Query: 1   MILNNPTLAQLVERRTVVVSTDKSLVFLSFAFSGVGVLEFRRHCTNNFLLSPVHCTIQPV 60
           MILNNPTLAQLVERRTVVVSTDKSLVFLSFAFSGVGVLEFRRHCTNNFLLSPVHCTIQPV
Sbjct: 1   MILNNPTLAQLVERRTVVVSTDKSLVFLSFAFSGVGVLEFRRHCTNNFLLSPVHCTIQPV 60

Query: 61  FFIQLSIWVVVIYRLNNNEIVANEVYSFYLAMSDIAYFLSEIVDADATTLRLYLTCIRNT 120
           FFIQLSIWVVVIYRLNNNEIVANEVYSFYLAMSDIAYFLSEIVDADATTLRLYLTCIRNT
Sbjct: 61  FFIQLSIWVVVIYRLNNNEIVANEVYSFYLAMSDIAYFLSEIVDADATTLRLYLTCIRNT 120

Query: 121 LEAAMCLQECDVTERIACNCFLKT 145
           LEAAMCLQECDVTERIACNCFLKT
Sbjct: 121 LEAAMCLQECDVTERIACNCFLKT 144

[Close]
BLAST of Csa3G200190 vs. NCBI nr
Match: gi|700202375|gb|KGN57508.1| (hypothetical protein Csa_3G200190 [Cucumis sativus])

HSP 1 Score: 289.7 bits (740), Expect = 2.9e-75
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 1 

Query: 1   MILNNPTLAQLVERRTVVVSTDKSLVFLSFAFSGVGVLEFRRHCTNNFLLSPVHCTIQPV 60
           MILNNPTLAQLVERRTVVVSTDKSLVFLSFAFSGVGVLEFRRHCTNNFLLSPVHCTIQPV
Sbjct: 1   MILNNPTLAQLVERRTVVVSTDKSLVFLSFAFSGVGVLEFRRHCTNNFLLSPVHCTIQPV 60

Query: 61  FFIQLSIWVVVIYRLNNNEIVANEVYSFYLAMSDIAYFLSEIVDADATTLRLYLTCIRNT 120
           FFIQLSIWVVVIYRLNNNEIVANEVYSFYLAMSDIAYFLSEIVDADATTLRLYLTCIRNT
Sbjct: 61  FFIQLSIWVVVIYRLNNNEIVANEVYSFYLAMSDIAYFLSEIVDADATTLRLYLTCIRNT 120

Query: 121 LEAAMCLQECDVTERIACNCFLKT 145
           LEAAMCLQECDVTERIACNCFLKT
Sbjct: 121 LEAAMCLQECDVTERIACNCFLKT 144

The following BLAST results are available for this feature:
BLAST of Csa3G200190 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L713_CUCSA2.0e-75100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G200190 PE=4 SV=1[more]
BLAST of Csa3G200190 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202375|gb|KGN57508.1|2.9e-75100.00hypothetical protein Csa_3G200190 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU087007cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G200190.1Csa3G200190.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU087007CU087007transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G200190Cucurbita moschata (Rifu)cmocuB117
Csa3G200190Cucurbita moschata (Rifu)cmocuB307
Csa3G200190Cucurbita moschata (Rifu)cmocuB504
Csa3G200190Cucurbita moschata (Rifu)cmocuB687
Csa3G200190Melon (DHL92) v3.5.1cumeB166
Csa3G200190Melon (DHL92) v3.5.1cumeB195
Csa3G200190Melon (DHL92) v3.5.1cumeB265
Csa3G200190Watermelon (Charleston Gray)cuwcgB211
Csa3G200190Watermelon (Charleston Gray)cuwcgB215
Csa3G200190Watermelon (Charleston Gray)cuwcgB230
Csa3G200190Watermelon (97103) v1cuwmB243
Csa3G200190Watermelon (97103) v1cuwmB270
Csa3G200190Cucurbita pepo (Zucchini)cpecuB205
Csa3G200190Cucurbita pepo (Zucchini)cpecuB242
Csa3G200190Cucurbita pepo (Zucchini)cpecuB389
Csa3G200190Cucurbita pepo (Zucchini)cpecuB677
Csa3G200190Bottle gourd (USVL1VR-Ls)culsiB189
Csa3G200190Bottle gourd (USVL1VR-Ls)culsiB211
Csa3G200190Cucumber (Gy14) v2cgybcuB109
Csa3G200190Cucumber (Gy14) v2cgybcuB307
Csa3G200190Melon (DHL92) v3.6.1cumedB181
Csa3G200190Melon (DHL92) v3.6.1cumedB238
Csa3G200190Melon (DHL92) v3.6.1cumedB255
Csa3G200190Silver-seed gourdcarcuB0232
Csa3G200190Silver-seed gourdcarcuB0320
Csa3G200190Silver-seed gourdcarcuB0400
Csa3G200190Watermelon (97103) v2cuwmbB198
Csa3G200190Watermelon (97103) v2cuwmbB215
Csa3G200190Wax gourdcuwgoB283
Csa3G200190Wax gourdcuwgoB308
Csa3G200190Cucumber (Chinese Long) v2cucuB129
Csa3G200190Cucumber (Gy14) v1cgycuB320
Csa3G200190Cucumber (Gy14) v1cgycuB350
Csa3G200190Cucurbita maxima (Rimu)cmacuB128
Csa3G200190Cucurbita maxima (Rimu)cmacuB320
Csa3G200190Cucurbita maxima (Rimu)cmacuB513
Csa3G200190Cucurbita maxima (Rimu)cmacuB697