Csa3G199650 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G199650
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 13772402 .. 13772778 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGAAATTTCGATCAAATCGCCGACAAATTTCAGTAGAGCTGATGTGGGAAATGGGATTGCAAAAAATGGCTTAATCTCGAATTTCACAGTAAGATTGGGGTGTGAAATCAGCTTGAATCTATGTCGCTTCGCCAGCTTCTATCAGGCTATGGACCAAGTATTATCTCCTGAAACAAAAAGGATTTATTGGGTTTGTTTCTCGAAATTTTCTATGCACATAAAAGGGATTTTTCCAATGGTGGTTCACAATTTCAGGACAGTGAGAAGAGAACCGGCAAAAACACGAACCCTTCAATCAGAAAGAGGTTGGGAACTGGGAATTTTTTGAGGAAGCGGCCATTTGCAGCAGAAGGTGAAGCTTTCAGGTTTTGA

mRNA sequence

ATGAAAGAAATTTCGATCAAATCGCCGACAAATTTCAGTAGAGCTGATGTGGGAAATGGGATTGCAAAAAATGGCTTAATCTCGAATTTCACAGTAAGATTGGGGTGTGAAATCAGCTTGAATCTATGTCGCTTCGCCAGCTTCTATCAGGCTATGGACCAAGACAGTGAGAAGAGAACCGGCAAAAACACGAACCCTTCAATCAGAAAGAGGTTGGGAACTGGGAATTTTTTGAGGAAGCGGCCATTTGCAGCAGAAGGTGAAGCTTTCAGGTTTTGA

Coding sequence (CDS)

ATGAAAGAAATTTCGATCAAATCGCCGACAAATTTCAGTAGAGCTGATGTGGGAAATGGGATTGCAAAAAATGGCTTAATCTCGAATTTCACAGTAAGATTGGGGTGTGAAATCAGCTTGAATCTATGTCGCTTCGCCAGCTTCTATCAGGCTATGGACCAAGACAGTGAGAAGAGAACCGGCAAAAACACGAACCCTTCAATCAGAAAGAGGTTGGGAACTGGGAATTTTTTGAGGAAGCGGCCATTTGCAGCAGAAGGTGAAGCTTTCAGGTTTTGA

Protein sequence

MKEISIKSPTNFSRADVGNGIAKNGLISNFTVRLGCEISLNLCRFASFYQAMDQDSEKRTGKNTNPSIRKRLGTGNFLRKRPFAAEGEAFRF*
Homology
[Close]
BLAST of Csa3G199650 vs. TrEMBL
Match: A0A0A0L710_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G199650 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 9.1e-45
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1 

Query: 1  MKEISIKSPTNFSRADVGNGIAKNGLISNFTVRLGCEISLNLCRFASFYQAMDQDSEKRT 60
          MKEISIKSPTNFSRADVGNGIAKNGLISNFTVRLGCEISLNLCRFASFYQAMDQDSEKRT
Sbjct: 1  MKEISIKSPTNFSRADVGNGIAKNGLISNFTVRLGCEISLNLCRFASFYQAMDQDSEKRT 60

Query: 61 GKNTNPSIRKRLGTGNFLRKRPFAAEGEAFRF 93
          GKNTNPSIRKRLGTGNFLRKRPFAAEGEAFRF
Sbjct: 61 GKNTNPSIRKRLGTGNFLRKRPFAAEGEAFRF 92

[Close]
BLAST of Csa3G199650 vs. NCBI nr
Match: gi|700202370|gb|KGN57503.1| (hypothetical protein Csa_3G199650 [Cucumis sativus])

HSP 1 Score: 187.2 bits (474), Expect = 1.3e-44
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1 

Query: 1  MKEISIKSPTNFSRADVGNGIAKNGLISNFTVRLGCEISLNLCRFASFYQAMDQDSEKRT 60
          MKEISIKSPTNFSRADVGNGIAKNGLISNFTVRLGCEISLNLCRFASFYQAMDQDSEKRT
Sbjct: 1  MKEISIKSPTNFSRADVGNGIAKNGLISNFTVRLGCEISLNLCRFASFYQAMDQDSEKRT 60

Query: 61 GKNTNPSIRKRLGTGNFLRKRPFAAEGEAFRF 93
          GKNTNPSIRKRLGTGNFLRKRPFAAEGEAFRF
Sbjct: 61 GKNTNPSIRKRLGTGNFLRKRPFAAEGEAFRF 92

The following BLAST results are available for this feature:
BLAST of Csa3G199650 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L710_CUCSA9.1e-45100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G199650 PE=4 SV=1[more]
BLAST of Csa3G199650 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202370|gb|KGN57503.1|1.3e-44100.00hypothetical protein Csa_3G199650 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU123993cucumber EST collection version 3.0transcribed_cluster
CU160490cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G199650.1Csa3G199650.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU160490CU160490transcribed_cluster
CU123993CU123993transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa3G199650CSPI03G18200Wild cucumber (PI 183967)cpicuB120
Csa3G199650CsGy3G018090Cucumber (Gy14) v2cgybcuB109
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G199650Watermelon (97103) v2cuwmbB198
Csa3G199650Watermelon (97103) v2cuwmbB215
Csa3G199650Wax gourdcuwgoB283
Csa3G199650Wax gourdcuwgoB308
Csa3G199650Cucumber (Chinese Long) v2cucuB129
Csa3G199650Cucumber (Gy14) v1cgycuB320
Csa3G199650Cucumber (Gy14) v1cgycuB350
Csa3G199650Cucurbita maxima (Rimu)cmacuB128
Csa3G199650Cucurbita maxima (Rimu)cmacuB320
Csa3G199650Cucurbita maxima (Rimu)cmacuB513
Csa3G199650Cucurbita maxima (Rimu)cmacuB697
Csa3G199650Cucurbita moschata (Rifu)cmocuB117
Csa3G199650Cucurbita moschata (Rifu)cmocuB307
Csa3G199650Cucurbita moschata (Rifu)cmocuB504
Csa3G199650Cucurbita moschata (Rifu)cmocuB687
Csa3G199650Melon (DHL92) v3.5.1cumeB166
Csa3G199650Melon (DHL92) v3.5.1cumeB195
Csa3G199650Melon (DHL92) v3.5.1cumeB265
Csa3G199650Watermelon (Charleston Gray)cuwcgB211
Csa3G199650Watermelon (Charleston Gray)cuwcgB215
Csa3G199650Watermelon (Charleston Gray)cuwcgB230
Csa3G199650Watermelon (97103) v1cuwmB243
Csa3G199650Watermelon (97103) v1cuwmB270
Csa3G199650Cucurbita pepo (Zucchini)cpecuB205
Csa3G199650Cucurbita pepo (Zucchini)cpecuB389
Csa3G199650Cucurbita pepo (Zucchini)cpecuB677
Csa3G199650Bottle gourd (USVL1VR-Ls)culsiB189
Csa3G199650Bottle gourd (USVL1VR-Ls)culsiB211
Csa3G199650Cucumber (Gy14) v2cgybcuB307
Csa3G199650Melon (DHL92) v3.6.1cumedB181
Csa3G199650Melon (DHL92) v3.6.1cumedB238
Csa3G199650Melon (DHL92) v3.6.1cumedB255
Csa3G199650Silver-seed gourdcarcuB0320
Csa3G199650Silver-seed gourdcarcuB0400