Csa3G146570 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G146570
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionPentatricopeptide repeat-containing protein
LocationChr3 : 9857806 .. 9858188 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGCTCTCTCTTGTCGTCTTATCAAACTTATATGCTAAAGAAAGAAGATGGGAAGGCGTAGGGGAAGTTAGAAAAGTAATGAACAAGATGGGCGTTTCAAAAGAGGGAGGAGGACGCAGTAGAATTGAATTGATCAACGAGGTCCATGAATTTCAAATGGCAGATAGAAGCAAGCAGATCAAATATATCACAATTTAGATGAGGTAGTTCAAAAGCTGAATCTGGTTGGTTATACGCCACAGACAAATTGTGTGCTTATCGACTTAGAGGAGAGAAAAGAAGAAATCAACCCTTCAGCACAGCGAAAAGTTGGCACTTCGCGATGCCCTCATGAATGGAGGGCGACACATTTACATTACAAAGAACCCTCGGATTTGTGA

mRNA sequence

ATGGGGCTCTCTCTTGTCGTCTTATCAAACTTATATGCTAAAGAAAGAAGATGGGAAGGCGTAGGGGAAGTTAGAAAAGTAATGAACAAGATGGGCGTTTCAAAAGAGGGAGGAGGACGCAGTAGAATTGAATTGATCAACGAGACAAATTGTGTGCTTATCGACTTAGAGGAGAGAAAAGAAGAAATCAACCCTTCAGCACAGCGAAAAGTTGGCACTTCGCGATGCCCTCATGAATGGAGGGCGACACATTTACATTACAAAGAACCCTCGGATTTGTGA

Coding sequence (CDS)

ATGGGGCTCTCTCTTGTCGTCTTATCAAACTTATATGCTAAAGAAAGAAGATGGGAAGGCGTAGGGGAAGTTAGAAAAGTAATGAACAAGATGGGCGTTTCAAAAGAGGGAGGAGGACGCAGTAGAATTGAATTGATCAACGAGACAAATTGTGTGCTTATCGACTTAGAGGAGAGAAAAGAAGAAATCAACCCTTCAGCACAGCGAAAAGTTGGCACTTCGCGATGCCCTCATGAATGGAGGGCGACACATTTACATTACAAAGAACCCTCGGATTTGTGA

Protein sequence

MGLSLVVLSNLYAKERRWEGVGEVRKVMNKMGVSKEGGGRSRIELINETNCVLIDLEERKEEINPSAQRKVGTSRCPHEWRATHLHYKEPSDL*
Homology
[Close]
BLAST of Csa3G146570 vs. TrEMBL
Match: A0A0A0L8N8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G146570 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 2.2e-46
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1 

Query: 1  MGLSLVVLSNLYAKERRWEGVGEVRKVMNKMGVSKEGGGRSRIELINETNCVLIDLEERK 60
          MGLSLVVLSNLYAKERRWEGVGEVRKVMNKMGVSKEGGGRSRIELINETNCVLIDLEERK
Sbjct: 1  MGLSLVVLSNLYAKERRWEGVGEVRKVMNKMGVSKEGGGRSRIELINETNCVLIDLEERK 60

Query: 61 EEINPSAQRKVGTSRCPHEWRATHLHYKEPSDL 94
          EEINPSAQRKVGTSRCPHEWRATHLHYKEPSDL
Sbjct: 61 EEINPSAQRKVGTSRCPHEWRATHLHYKEPSDL 93

[Close]
BLAST of Csa3G146570 vs. TrEMBL
Match: A0A0B0NLW2_GOSAR (Pentatricopeptide repeat-containing-like protein OS=Gossypium arboreum GN=F383_05089 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 6.4e-06
Identity = 29/58 (50.00%), Postives = 43/58 (74.14%), Query Frame = 1 

Query: 4   SLVVLSNLYAKERRWEGVGEVRKVMNKMGVSKEGGGRSRIELINETNCVLIDLEERKE 62
           +LV+LSN+YAKER+W+ VG++R++M + G+SKE  G SRIEL NE +  L+     K+
Sbjct: 554 ALVLLSNIYAKERKWQNVGDLRQLMKERGISKE-RGYSRIELNNEVHEFLVADRNHKQ 610

[Close]
BLAST of Csa3G146570 vs. TAIR10
Match: AT5G39680.1 (AT5G39680.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 48.5 bits (114), Expect = 2.6e-06
Identity = 26/56 (46.43%), Postives = 34/56 (60.71%), Query Frame = 1 

Query: 6   VVLSNLYAKERRWEGVGEVRKVMNKMGVSKEGGGRSRIELINETNCVLIDLEERKE 62
           V+LSN++AK R WEGV +VR +MN  GV KE  G S I + N+T+  L +  +  E
Sbjct: 545 VLLSNIHAKSREWEGVAKVRSLMNNRGVKKE-PGVSWIGIRNQTHVFLAEDNQHPE 599

[Close]
BLAST of Csa3G146570 vs. NCBI nr
Match: gi|700201839|gb|KGN56972.1| (hypothetical protein Csa_3G146570 [Cucumis sativus])

HSP 1 Score: 192.6 bits (488), Expect = 3.1e-46
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1 

Query: 1  MGLSLVVLSNLYAKERRWEGVGEVRKVMNKMGVSKEGGGRSRIELINETNCVLIDLEERK 60
          MGLSLVVLSNLYAKERRWEGVGEVRKVMNKMGVSKEGGGRSRIELINETNCVLIDLEERK
Sbjct: 1  MGLSLVVLSNLYAKERRWEGVGEVRKVMNKMGVSKEGGGRSRIELINETNCVLIDLEERK 60

Query: 61 EEINPSAQRKVGTSRCPHEWRATHLHYKEPSDL 94
          EEINPSAQRKVGTSRCPHEWRATHLHYKEPSDL
Sbjct: 61 EEINPSAQRKVGTSRCPHEWRATHLHYKEPSDL 93

[Close]
BLAST of Csa3G146570 vs. NCBI nr
Match: gi|778688466|ref|XP_011652755.1| (PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At4g14820 [Cucumis sativus])

HSP 1 Score: 91.3 bits (225), Expect = 9.9e-16
Identity = 45/49 (91.84%), Postives = 46/49 (93.88%), Query Frame = 1 

Query: 2   GLSLVVLSNLYAKERRWEGVGEVRKVMNKMGVSKEGGGRSRIELINETN 51
           G  LVVLSNLYAKERRWEGVGEVRKVMNKMGVSKEGGGRSRIELINE +
Sbjct: 432 GALLVVLSNLYAKERRWEGVGEVRKVMNKMGVSKEGGGRSRIELINEVH 480

[Close]
BLAST of Csa3G146570 vs. NCBI nr
Match: gi|728834209|gb|KHG13652.1| (Pentatricopeptide repeat-containing -like protein [Gossypium arboreum])

HSP 1 Score: 58.2 bits (139), Expect = 9.2e-06
Identity = 29/58 (50.00%), Postives = 43/58 (74.14%), Query Frame = 1 

Query: 4   SLVVLSNLYAKERRWEGVGEVRKVMNKMGVSKEGGGRSRIELINETNCVLIDLEERKE 62
           +LV+LSN+YAKER+W+ VG++R++M + G+SKE  G SRIEL NE +  L+     K+
Sbjct: 554 ALVLLSNIYAKERKWQNVGDLRQLMKERGISKE-RGYSRIELNNEVHEFLVADRNHKQ 610

The following BLAST results are available for this feature:
BLAST of Csa3G146570 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L8N8_CUCSA2.2e-46100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G146570 PE=4 SV=1[more]
A0A0B0NLW2_GOSAR6.4e-0650.00Pentatricopeptide repeat-containing-like protein OS=Gossypium arboreum GN=F383_0... [more]
BLAST of Csa3G146570 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G39680.12.6e-0646.43 Pentatricopeptide repeat (PPR) superfamily protein[more]
BLAST of Csa3G146570 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700201839|gb|KGN56972.1|3.1e-46100.00hypothetical protein Csa_3G146570 [Cucumis sativus][more]
gi|778688466|ref|XP_011652755.1|9.9e-1691.84PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At4g... [more]
gi|728834209|gb|KHG13652.1|9.2e-0650.00Pentatricopeptide repeat-containing -like protein [Gossypium arboreum][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G146570.1Csa3G146570.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 6..43
score: 3.4
NoneNo IPR availablePANTHERPTHR24015:SF574SUBFAMILY NOT NAMEDcoord: 6..43
score: 3.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa3G146570Cla021618Watermelon (97103) v1cuwmB233
Csa3G146570ClCG05G005100Watermelon (Charleston Gray)cuwcgB222
Csa3G146570Lsi05G016110Bottle gourd (USVL1VR-Ls)culsiB209
Csa3G146570Cla97C05G086260Watermelon (97103) v2cuwmbB204
Csa3G146570Bhi01G000577Wax gourdcuwgoB269
Csa3G146570CmaCh06G014020Cucurbita maxima (Rimu)cmacuB814
Csa3G146570CmoCh06G014060Cucurbita moschata (Rifu)cmocuB806
Csa3G146570Carg17425Silver-seed gourdcarcuB0633
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G146570Silver-seed gourdcarcuB0115
Csa3G146570Silver-seed gourdcarcuB0256
Csa3G146570Silver-seed gourdcarcuB0350
Csa3G146570Silver-seed gourdcarcuB0865
Csa3G146570Watermelon (97103) v2cuwmbB231
Csa3G146570Watermelon (97103) v2cuwmbB259
Csa3G146570Wax gourdcuwgoB252
Csa3G146570Wax gourdcuwgoB346
Csa3G146570Cucumber (Chinese Long) v2cucuB130
Csa3G146570Cucumber (Gy14) v1cgycuB339
Csa3G146570Cucumber (Gy14) v1cgycuB366
Csa3G146570Cucurbita maxima (Rimu)cmacuB253
Csa3G146570Cucurbita maxima (Rimu)cmacuB355
Csa3G146570Cucurbita maxima (Rimu)cmacuB364
Csa3G146570Cucurbita maxima (Rimu)cmacuB885
Csa3G146570Cucurbita moschata (Rifu)cmocuB239
Csa3G146570Cucurbita moschata (Rifu)cmocuB353
Csa3G146570Cucurbita moschata (Rifu)cmocuB872
Csa3G146570Melon (DHL92) v3.5.1cumeB192
Csa3G146570Melon (DHL92) v3.5.1cumeB196
Csa3G146570Melon (DHL92) v3.5.1cumeB236
Csa3G146570Watermelon (Charleston Gray)cuwcgB183
Csa3G146570Watermelon (Charleston Gray)cuwcgB246
Csa3G146570Watermelon (97103) v1cuwmB189
Csa3G146570Watermelon (97103) v1cuwmB279
Csa3G146570Cucurbita pepo (Zucchini)cpecuB310
Csa3G146570Cucurbita pepo (Zucchini)cpecuB609
Csa3G146570Cucurbita pepo (Zucchini)cpecuB859
Csa3G146570Bottle gourd (USVL1VR-Ls)culsiB150
Csa3G146570Bottle gourd (USVL1VR-Ls)culsiB177
Csa3G146570Cucumber (Gy14) v2cgybcuB109
Csa3G146570Cucumber (Gy14) v2cgybcuB308
Csa3G146570Melon (DHL92) v3.6.1cumedB177
Csa3G146570Melon (DHL92) v3.6.1cumedB223