Csa3G116830 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G116830
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 6323954 .. 6324193 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCTGTACAAAAACGCAAAATTCAGATAAATTTCTTACACAAAAGAAGGTTGTAGTTGTAACTAACACATTTCTATTGGAAAACAATGGAGATCTGTATTTCCACTGGGAGTGGCTTCAGACCGAAACTCCATTGCCATTGGAATCAGAACTGGCGACGATTGGATTGAAATCGCGAAAGGATGCTCCTCAAGTCCCCAAGGCAGCTGAGCATCCGCCACGAGTTCAGCTGACATGA

mRNA sequence

ATGGTCTGTACAAAAACGCAAAATTCAGATAAATTTCTTACACAAAAGAAGGTTGTAGTTGTAACTAACACATTTCTATTGGAAAACAATGGAGATCTGTATTTCCACTGGGAGTGGCTTCAGACCGAAACTCCATTGCCATTGGAATCAGAACTGGCGACGATTGGATTGAAATCGCGAAAGGATGCTCCTCAAGTCCCCAAGGCAGCTGAGCATCCGCCACGAGTTCAGCTGACATGA

Coding sequence (CDS)

ATGGTCTGTACAAAAACGCAAAATTCAGATAAATTTCTTACACAAAAGAAGGTTGTAGTTGTAACTAACACATTTCTATTGGAAAACAATGGAGATCTGTATTTCCACTGGGAGTGGCTTCAGACCGAAACTCCATTGCCATTGGAATCAGAACTGGCGACGATTGGATTGAAATCGCGAAAGGATGCTCCTCAAGTCCCCAAGGCAGCTGAGCATCCGCCACGAGTTCAGCTGACATGA

Protein sequence

MVCTKTQNSDKFLTQKKVVVVTNTFLLENNGDLYFHWEWLQTETPLPLESELATIGLKSRKDAPQVPKAAEHPPRVQLT*
Homology
[Close]
BLAST of Csa3G116830 vs. TrEMBL
Match: A0A0A0L8A3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G116830 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 2.4e-38
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1 

Query: 1  MVCTKTQNSDKFLTQKKVVVVTNTFLLENNGDLYFHWEWLQTETPLPLESELATIGLKSR 60
          MVCTKTQNSDKFLTQKKVVVVTNTFLLENNGDLYFHWEWLQTETPLPLESELATIGLKSR
Sbjct: 1  MVCTKTQNSDKFLTQKKVVVVTNTFLLENNGDLYFHWEWLQTETPLPLESELATIGLKSR 60

Query: 61 KDAPQVPKAAEHPPRVQLT 80
          KDAPQVPKAAEHPPRVQLT
Sbjct: 61 KDAPQVPKAAEHPPRVQLT 79

[Close]
BLAST of Csa3G116830 vs. NCBI nr
Match: gi|700201213|gb|KGN56346.1| (hypothetical protein Csa_3G116830 [Cucumis sativus])

HSP 1 Score: 165.6 bits (418), Expect = 3.5e-38
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1 

Query: 1  MVCTKTQNSDKFLTQKKVVVVTNTFLLENNGDLYFHWEWLQTETPLPLESELATIGLKSR 60
          MVCTKTQNSDKFLTQKKVVVVTNTFLLENNGDLYFHWEWLQTETPLPLESELATIGLKSR
Sbjct: 1  MVCTKTQNSDKFLTQKKVVVVTNTFLLENNGDLYFHWEWLQTETPLPLESELATIGLKSR 60

Query: 61 KDAPQVPKAAEHPPRVQLT 80
          KDAPQVPKAAEHPPRVQLT
Sbjct: 61 KDAPQVPKAAEHPPRVQLT 79

The following BLAST results are available for this feature:
BLAST of Csa3G116830 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L8A3_CUCSA2.4e-38100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G116830 PE=4 SV=1[more]
BLAST of Csa3G116830 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700201213|gb|KGN56346.1|3.5e-38100.00hypothetical protein Csa_3G116830 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G116830.1Csa3G116830.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa3G116830CsGy3G007310Cucumber (Gy14) v2cgybcuB109
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G116830Wax gourdcuwgoB284
Csa3G116830Cucumber (Gy14) v1cgycuB366
Csa3G116830Cucurbita maxima (Rimu)cmacuB004
Csa3G116830Cucurbita maxima (Rimu)cmacuB009
Csa3G116830Cucurbita maxima (Rimu)cmacuB253
Csa3G116830Cucurbita maxima (Rimu)cmacuB818
Csa3G116830Cucurbita moschata (Rifu)cmocuB239
Csa3G116830Cucurbita moschata (Rifu)cmocuB806
Csa3G116830Melon (DHL92) v3.5.1cumeB236
Csa3G116830Watermelon (Charleston Gray)cuwcgB222
Csa3G116830Watermelon (97103) v1cuwmB233
Csa3G116830Cucurbita pepo (Zucchini)cpecuB609
Csa3G116830Cucurbita pepo (Zucchini)cpecuB862
Csa3G116830Bottle gourd (USVL1VR-Ls)culsiB198
Csa3G116830Bottle gourd (USVL1VR-Ls)culsiB209
Csa3G116830Melon (DHL92) v3.6.1cumedB223
Csa3G116830Silver-seed gourdcarcuB0105
Csa3G116830Silver-seed gourdcarcuB0145
Csa3G116830Watermelon (97103) v2cuwmbB204