Csa3G055940 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G055940
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionNuclear transcription factor Y subunit B3; contains IPR003957 (Transcription factor, CBFA/NFYB, DNA topoisomerase), IPR009072 (Histone-fold)
LocationChr3 : 3469618 .. 3470370 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGAACAATCAGAAATTTTTGTATGTAGACATCAAGGAAGGAAATGAATATGGATATTTTTATGTATATGTTCTCTTGATGAATCTGAATTTGCAGTATTTGTGTCGTTATTCAGAACTGAACATGATGCTGACCCCAAACAACCCAAACTCCATCAACAACAATCCAAACACCAATCACCATCTCTCGGACGGAGGAACCTCCATTGGCAACTCCTCAGCTACCAGCCCCCTCTCGGTCGCCGCCACTGCCAACAATAATGAGCAAAACCAACAATGCTTGGTGCGAGAACAAGACCAATACATGCCGATGGCTAATGTGATACGAATCATGAAGCGGATTTTACCCTCCCATGCAAAAATATCTGACGACACCAAAGAGACCATCTAAGAATGTGTGTCGGAGTACATTAGCTTCATCACTAGCGAGGCGAACGAACGATGCCAACGGGAGCAACGCAAGACGGTGACTGCAGAGGATGTCCTTTGGGCTATGGGGAAGTTAGGTTTTGACAACTACATAGAACCGCTCACTGTTTTCCTTAACCGGTATCGTGAGTCAGAGAGTATTCGTACTGAACCAATGTTGAGGCGCAATGTGGATTATGGGCCACAAGTGGGGATGATATCACCGTACGGGCAGGCGTTTCAGATAGGACACGTTCCTGCAGGGATGTTCGATGCAATGGGTGGATACTATGGTGGAGGAGGGAGCTGTGGGCCGAGCACAGGGAACAACAGCCAGCTTTGA

mRNA sequence

ATGTTGAACAATCAGAAATTTTTGTATGTAGACATCAAGGAAGGAAATGAATATGGATATTTTTATGTATATGTTCTCTTGATGAATCTGAATTTGCAGTATTTGTGTCGTTATTCAGAACTGAACATGATGCTGACCCCAAACAACCCAAACTCCATCAACAACAATCCAAACACCAATCACCATCTCTCGGACGGAGGAACCTCCATTGGCAACTCCTCAGCTACCAGCCCCCTCTCGGTCGCCGCCACTGCCAACAATAATGAGCAAAACCAACAATGCTTGGTGCGAGAACAAGACCAATACATGCCGATGGCTAATTACATTAGCTTCATCACTAGCGAGGCGAACGAACGATGCCAACGGGAGCAACGCAAGACGGTGACTGCAGAGGATGTCCTTTGGGCTATGGGGAAGTTAGGTTTTGACAACTACATAGAACCGCTCACTGTTTTCCTTAACCGGTATCGTGAGTCAGAGAGTATTCGTACTGAACCAATGTTGAGGCGCAATGTGGATTATGGGCCACAAGTGGGGATGATATCACCGTACGGGCAGGCGTTTCAGATAGGACACGTTCCTGCAGGGATGTTCGATGCAATGGGTGGATACTATGGTGGAGGAGGGAGCTGTGGGCCGAGCACAGGGAACAACAGCCAGCTTTGA

Coding sequence (CDS)

ATGTTGAACAATCAGAAATTTTTGTATGTAGACATCAAGGAAGGAAATGAATATGGATATTTTTATGTATATGTTCTCTTGATGAATCTGAATTTGCAGTATTTGTGTCGTTATTCAGAACTGAACATGATGCTGACCCCAAACAACCCAAACTCCATCAACAACAATCCAAACACCAATCACCATCTCTCGGACGGAGGAACCTCCATTGGCAACTCCTCAGCTACCAGCCCCCTCTCGGTCGCCGCCACTGCCAACAATAATGAGCAAAACCAACAATGCTTGGTGCGAGAACAAGACCAATACATGCCGATGGCTAATTACATTAGCTTCATCACTAGCGAGGCGAACGAACGATGCCAACGGGAGCAACGCAAGACGGTGACTGCAGAGGATGTCCTTTGGGCTATGGGGAAGTTAGGTTTTGACAACTACATAGAACCGCTCACTGTTTTCCTTAACCGGTATCGTGAGTCAGAGAGTATTCGTACTGAACCAATGTTGAGGCGCAATGTGGATTATGGGCCACAAGTGGGGATGATATCACCGTACGGGCAGGCGTTTCAGATAGGACACGTTCCTGCAGGGATGTTCGATGCAATGGGTGGATACTATGGTGGAGGAGGGAGCTGTGGGCCGAGCACAGGGAACAACAGCCAGCTTTGA

Protein sequence

MLNNQKFLYVDIKEGNEYGYFYVYVLLMNLNLQYLCRYSELNMMLTPNNPNSINNNPNTNHHLSDGGTSIGNSSATSPLSVAATANNNEQNQQCLVREQDQYMPMANYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESIRTEPMLRRNVDYGPQVGMISPYGQAFQIGHVPAGMFDAMGGYYGGGGSCGPSTGNNSQL*
Homology
[Close]
BLAST of Csa3G055940 vs. Swiss-Prot
Match: NFYB9_ARATH (Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana GN=NFYB9 PE=1 SV=2)

HSP 1 Score: 124.8 bits (312), Expect = 1.2e-27
Identity = 79/179 (44.13%), Postives = 91/179 (50.84%), Query Frame = 1 

Query: 76  TSPLSVAATANNN-----EQNQQCLVREQDQYMPMAN----------------------- 135
           TS + VA   + N     +Q   C+ REQDQYMP+AN                       
Sbjct: 32  TSSVVVAGAGDKNNGIVVQQQPPCVAREQDQYMPIANVIRIMRKTLPSHAKISDDAKETI 91

Query: 136 ------YISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESE- 195
                 YISF+T EANERCQREQRKT+TAED+LWAM KLGFDNY++PLTVF+NRYRE E 
Sbjct: 92  QECVSEYISFVTGEANERCQREQRKTITAEDILWAMSKLGFDNYVDPLTVFINRYREIET 151

Query: 196 ----SIRTEPMLRRNVDYGPQVGMISPYGQAFQIGHVPAGMFD---AMGG--YYGGGGS 211
               ++R EP   R    G  +G   P       G    GM D    MGG  YY  G S
Sbjct: 152 DRGSALRGEPPSLRQTYGGNGIGFHGPSHGLPPPGPYGYGMLDQSMVMGGGRYYQNGSS 210

[Close]
BLAST of Csa3G055940 vs. Swiss-Prot
Match: NFYB6_ARATH (Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana GN=NFYB6 PE=1 SV=2)

HSP 1 Score: 109.8 bits (273), Expect = 4.0e-23
Identity = 57/106 (53.77%), Postives = 67/106 (63.21%), Query Frame = 1 

Query: 87  NNEQNQQCLVREQDQYMPMAN-----------------------------YISFITSEAN 146
           +N   ++C VREQD++MP+AN                             YISFIT EAN
Sbjct: 47  SNGGEEECTVREQDRFMPIANVIRIMRRILPAHAKISDDSKETIQECVSEYISFITGEAN 106

Query: 147 ERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESIR 164
           ERCQREQRKT+TAEDVLWAM KLGFD+YIEPLT++L+RYRE E  R
Sbjct: 107 ERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYLHRYRELEGER 152

[Close]
BLAST of Csa3G055940 vs. Swiss-Prot
Match: NFYB2_ARATH (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana GN=NFYB2 PE=2 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.1e-16
Identity = 60/168 (35.71%), Postives = 84/168 (50.00%), Query Frame = 1 

Query: 49  NPNSINNNPNTNHHLSDGGTSIGNSSATSPLSVAATA----NNNEQNQQCLVREQDQYMP 108
           N N+ N   + +    D    I N S     ++ A A    +  E  Q+C+         
Sbjct: 13  NGNNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQECV--------- 72

Query: 109 MANYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESIRT 168
            + +ISF+T EA+++CQ+E+RKT+  +D+LWAM  LGF++Y+EPL V+L R+RE E  RT
Sbjct: 73  -SEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGERT 132

Query: 169 EPMLRRNVDYGPQVGMISPYGQAFQIGHVPAGMFDAM---GGYYGGGG 210
              L R     PQ G           G V     DA+   GG+YGGGG
Sbjct: 133 G--LGR-----PQTG-----------GEVGEHQRDAVGDGGGFYGGGG 152

[Close]
BLAST of Csa3G055940 vs. Swiss-Prot
Match: NFYB_DICDI (Nuclear transcription factor Y subunit beta OS=Dictyostelium discoideum GN=nfyB PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.3e-15
Identity = 54/142 (38.03%), Postives = 76/142 (53.52%), Query Frame = 1 

Query: 48  NNPNSINNNPNTNHHLSDGGTSIGNSSATSPLSVAATANNNEQNQQCLVREQDQYMPMAN 107
           N+ +SI+N        +DGG   G+S+  S       ANN   N     REQD+Y+P+AN
Sbjct: 12  NSSSSISNQ-------TDGGGGGGSSNNNS----GGNANN---NNNEGDREQDRYLPIAN 71

Query: 108 -----------------------------YISFITSEANERCQREQRKTVTAEDVLWAMG 161
                                        +ISFITSEA+++CQ+E+RKT+  ED++ AM 
Sbjct: 72  IIRIMKKALPNNAKVAKDAKETVQDCVSEFISFITSEASDKCQQEKRKTINGEDIIAAMV 131

[Close]
BLAST of Csa3G055940 vs. Swiss-Prot
Match: NFYB8_ARATH (Nuclear transcription factor Y subunit B-8 OS=Arabidopsis thaliana GN=NFYB8 PE=2 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 5.2e-15
Identity = 40/88 (45.45%), Postives = 57/88 (64.77%), Query Frame = 1 

Query: 105 MANYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESIRT 164
           ++ +ISF+TSEA+++CQRE+RKT+  +D+LWAM  LGF++Y+EPL V+L RYRE E   T
Sbjct: 66  VSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYREMEG-DT 125

Query: 165 EPMLRRNVDYGPQVGMISPYGQAFQIGH 193
           +   +       + G  S  GQ  Q+ H
Sbjct: 126 KGSAKGGDPNAKKDGQSSQNGQFSQLAH 152

[Close]
BLAST of Csa3G055940 vs. TrEMBL
Match: A0A0A0L4W1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G055940 PE=4 SV=1)

HSP 1 Score: 460.3 bits (1183), Expect = 1.3e-126
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 1 

Query: 1   MLNNQKFLYVDIKEGNEYGYFYVYVLLMNLNLQYLCRYSELNMMLTPNNPNSINNNPNTN 60
           MLNNQKFLYVDIKEGNEYGYFYVYVLLMNLNLQYLCRYSELNMMLTPNNPNSINNNPNTN
Sbjct: 1   MLNNQKFLYVDIKEGNEYGYFYVYVLLMNLNLQYLCRYSELNMMLTPNNPNSINNNPNTN 60

Query: 61  HHLSDGGTSIGNSSATSPLSVAATANNNEQNQQCLVREQDQYMPMANYISFITSEANERC 120
           HHLSDGGTSIGNSSATSPLSVAATANNNEQNQQCLVREQDQYMPMANYISFITSEANERC
Sbjct: 61  HHLSDGGTSIGNSSATSPLSVAATANNNEQNQQCLVREQDQYMPMANYISFITSEANERC 120

Query: 121 QREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESIRTEPMLRRNVDYGPQVGM 180
           QREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESIRTEPMLRRNVDYGPQVGM
Sbjct: 121 QREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESIRTEPMLRRNVDYGPQVGM 180

Query: 181 ISPYGQAFQIGHVPAGMFDAMGGYYGGGGSCGPSTGNNSQL 222
           ISPYGQAFQIGHVPAGMFDAMGGYYGGGGSCGPSTGNNSQL
Sbjct: 181 ISPYGQAFQIGHVPAGMFDAMGGYYGGGGSCGPSTGNNSQL 221

[Close]
BLAST of Csa3G055940 vs. TrEMBL
Match: A0A0A0L2U1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G049440 PE=4 SV=1)

HSP 1 Score: 390.2 bits (1001), Expect = 1.7e-105
Identity = 196/239 (82.01%), Postives = 202/239 (84.52%), Query Frame = 1 

Query: 12  IKEGNEYGYFYVYVLLMNLNLQYLCRYSELNMMLTPNNPNSINNNPNTNHHLSDGGTSIG 71
           +KEGNEYGYFYVYV+LMNLNL+YLCRYS LN MLTPNNP SIN+NPNTN HLS+GGTSIG
Sbjct: 1   MKEGNEYGYFYVYVILMNLNLKYLCRYSGLNTMLTPNNPTSINSNPNTNQHLSNGGTSIG 60

Query: 72  NSSATSPLSVAATANNNEQNQQCLVREQDQYMPMAN------------------------ 131
           NSSATSPLSVAATANNNEQNQQCLVREQDQYMPMAN                        
Sbjct: 61  NSSATSPLSVAATANNNEQNQQCLVREQDQYMPMANVIRIMKRILPSHAKISDDTKETIQ 120

Query: 132 -----YISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESI 191
                YISFITSEANERCQREQRKTVTAEDVLWAMGKLGFD+YIEPLTVFLNRYRESESI
Sbjct: 121 ECVSEYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESI 180

Query: 192 RTEPMLRRNVDYGPQVGMISPYGQAFQIGHVPAGMFDAMGGYYGGGGSCGPSTGNNSQL 222
           RTEPMLRRNVDYG QVGMISPYGQAFQIG VPAGMFDAMGGYYGGGGS GPS GNNSQL
Sbjct: 181 RTEPMLRRNVDYGAQVGMISPYGQAFQIGQVPAGMFDAMGGYYGGGGSGGPSAGNNSQL 239

[Close]
BLAST of Csa3G055940 vs. TrEMBL
Match: A0A0A0L645_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G048940 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 9.4e-40
Identity = 89/127 (70.08%), Postives = 93/127 (73.23%), Query Frame = 1 

Query: 43  MMLTPNNPNSINNNPNTNHHLSDGGTSIGNSSATSPLSVAATANNNEQNQQCLVREQDQY 102
           MMLTPN P SINN PNTNHHLS+GGT+ GNSSATSPLSVAATANNNEQNQQC+VREQDQY
Sbjct: 1   MMLTPNKPTSINNTPNTNHHLSNGGTATGNSSATSPLSVAATANNNEQNQQCVVREQDQY 60

Query: 103 MPMAN-----------------------------YISFITSEANERCQREQRKTVTAEDV 141
           MP+AN                             YISFIT EANERCQREQRKTVTAEDV
Sbjct: 61  MPIANVIRSMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV 120

[Close]
BLAST of Csa3G055940 vs. TrEMBL
Match: A0A0B0PGM2_GOSAR (Nuclear transcription factor Y subunit B-9-like protein OS=Gossypium arboreum GN=F383_03265 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 3.7e-36
Identity = 90/193 (46.63%), Postives = 122/193 (63.21%), Query Frame = 1 

Query: 51  NSINNNPNTNHHLSDGGTSIGNSSATSPLSVAATANNNEQNQQC--LVREQDQYMP---- 110
           +S N+N NTN  +++   + GN++ ++ +         +Q      ++R   + +P    
Sbjct: 26  DSSNSNTNTNTIINNNAANNGNAANSNTMPPPCMVREQDQYMPIANVIRIMRRILPTHAK 85

Query: 111 ------------MANYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVF 170
                       ++ YISFIT EANERCQREQRKT+TAEDVLWAMGKLGFD+Y+EPLTVF
Sbjct: 86  ISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMGKLGFDDYVEPLTVF 145

Query: 171 LNRYRESE----SIRTEPMLRRNVDYGPQVGMISPYGQAFQIGHVPAGMFD---AMGGYY 216
           LNRYRE+E    S+R+EPML+R +DYGP + M++PYG  F +GH   G+FD   AMGGY 
Sbjct: 146 LNRYRENENERTSLRSEPMLKRGIDYGPSM-MMAPYGAGFHVGH-QQGIFDGATAMGGYM 205

[Close]
BLAST of Csa3G055940 vs. TrEMBL
Match: A0A0D2SEP9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G152500 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 2.0e-34
Identity = 79/121 (65.29%), Postives = 95/121 (78.51%), Query Frame = 1 

Query: 105 MANYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESE---- 164
           ++ YISFIT EANERCQREQRKT+TAEDVLWAMGKLGFD+Y+EPLTVFLNRYRE+E    
Sbjct: 90  VSEYISFITGEANERCQREQRKTITAEDVLWAMGKLGFDDYVEPLTVFLNRYRENENERT 149

Query: 165 SIRTEPMLRRNVDYGPQVGMISPYGQAFQIGHVPAGMFD---AMGGYY---GGGGSCGPS 216
           S+R+EPML+R +DYGP + M++PYG  F +GH   G+FD   AMGGY      GG  GPS
Sbjct: 150 SLRSEPMLKRGIDYGPSM-MMAPYGAGFHVGH-QQGIFDGATAMGGYMRDGSSGGGGGPS 208

[Close]
BLAST of Csa3G055940 vs. TAIR10
Match: AT1G21970.1 (AT1G21970.1 Histone superfamily protein)

HSP 1 Score: 124.8 bits (312), Expect = 6.7e-29
Identity = 79/179 (44.13%), Postives = 91/179 (50.84%), Query Frame = 1 

Query: 76  TSPLSVAATANNN-----EQNQQCLVREQDQYMPMAN----------------------- 135
           TS + VA   + N     +Q   C+ REQDQYMP+AN                       
Sbjct: 32  TSSVVVAGAGDKNNGIVVQQQPPCVAREQDQYMPIANVIRIMRKTLPSHAKISDDAKETI 91

Query: 136 ------YISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESE- 195
                 YISF+T EANERCQREQRKT+TAED+LWAM KLGFDNY++PLTVF+NRYRE E 
Sbjct: 92  QECVSEYISFVTGEANERCQREQRKTITAEDILWAMSKLGFDNYVDPLTVFINRYREIET 151

Query: 196 ----SIRTEPMLRRNVDYGPQVGMISPYGQAFQIGHVPAGMFD---AMGG--YYGGGGS 211
               ++R EP   R    G  +G   P       G    GM D    MGG  YY  G S
Sbjct: 152 DRGSALRGEPPSLRQTYGGNGIGFHGPSHGLPPPGPYGYGMLDQSMVMGGGRYYQNGSS 210

[Close]
BLAST of Csa3G055940 vs. TAIR10
Match: AT5G47670.1 (AT5G47670.1 nuclear factor Y, subunit B6)

HSP 1 Score: 109.8 bits (273), Expect = 2.2e-24
Identity = 57/106 (53.77%), Postives = 67/106 (63.21%), Query Frame = 1 

Query: 87  NNEQNQQCLVREQDQYMPMAN-----------------------------YISFITSEAN 146
           +N   ++C VREQD++MP+AN                             YISFIT EAN
Sbjct: 47  SNGGEEECTVREQDRFMPIANVIRIMRRILPAHAKISDDSKETIQECVSEYISFITGEAN 106

Query: 147 ERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESIR 164
           ERCQREQRKT+TAEDVLWAM KLGFD+YIEPLT++L+RYRE E  R
Sbjct: 107 ERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYLHRYRELEGER 152

[Close]
BLAST of Csa3G055940 vs. TAIR10
Match: AT5G47640.1 (AT5G47640.1 nuclear factor Y, subunit B2)

HSP 1 Score: 87.4 bits (215), Expect = 1.2e-17
Identity = 60/168 (35.71%), Postives = 84/168 (50.00%), Query Frame = 1 

Query: 49  NPNSINNNPNTNHHLSDGGTSIGNSSATSPLSVAATA----NNNEQNQQCLVREQDQYMP 108
           N N+ N   + +    D    I N S     ++ A A    +  E  Q+C+         
Sbjct: 13  NGNNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQECV--------- 72

Query: 109 MANYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESIRT 168
            + +ISF+T EA+++CQ+E+RKT+  +D+LWAM  LGF++Y+EPL V+L R+RE E  RT
Sbjct: 73  -SEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGERT 132

Query: 169 EPMLRRNVDYGPQVGMISPYGQAFQIGHVPAGMFDAM---GGYYGGGG 210
              L R     PQ G           G V     DA+   GG+YGGGG
Sbjct: 133 G--LGR-----PQTG-----------GEVGEHQRDAVGDGGGFYGGGG 152

[Close]
BLAST of Csa3G055940 vs. TAIR10
Match: AT2G37060.1 (AT2G37060.1 nuclear factor Y, subunit B8)

HSP 1 Score: 82.8 bits (203), Expect = 2.9e-16
Identity = 40/88 (45.45%), Postives = 57/88 (64.77%), Query Frame = 1 

Query: 105 MANYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESIRT 164
           ++ +ISF+TSEA+++CQRE+RKT+  +D+LWAM  LGF++Y+EPL V+L RYRE E   T
Sbjct: 66  VSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYREMEG-DT 125

Query: 165 EPMLRRNVDYGPQVGMISPYGQAFQIGH 193
           +   +       + G  S  GQ  Q+ H
Sbjct: 126 KGSAKGGDPNAKKDGQSSQNGQFSQLAH 152

[Close]
BLAST of Csa3G055940 vs. TAIR10
Match: AT3G53340.1 (AT3G53340.1 nuclear factor Y, subunit B10)

HSP 1 Score: 81.3 bits (199), Expect = 8.5e-16
Identity = 38/83 (45.78%), Postives = 54/83 (65.06%), Query Frame = 1 

Query: 78  PLSVAATANNNEQNQQCLVREQDQYMPMANYISFITSEANERCQREQRKTVTAEDVLWAM 137
           PL+     +  E  Q+C+          + +ISF+TSEA+++CQRE+RKT+  +D+LWAM
Sbjct: 48  PLNGKIAKDAKETMQECV----------SEFISFVTSEASDKCQREKRKTINGDDLLWAM 107

Query: 138 GKLGFDNYIEPLTVFLNRYRESE 161
             LGF++YI+PL V+L RYRE E
Sbjct: 108 ATLGFEDYIDPLKVYLMRYREME 120

[Close]
BLAST of Csa3G055940 vs. NCBI nr
Match: gi|700200906|gb|KGN56039.1| (hypothetical protein Csa_3G055940 [Cucumis sativus])

HSP 1 Score: 460.3 bits (1183), Expect = 1.9e-126
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 1 

Query: 1   MLNNQKFLYVDIKEGNEYGYFYVYVLLMNLNLQYLCRYSELNMMLTPNNPNSINNNPNTN 60
           MLNNQKFLYVDIKEGNEYGYFYVYVLLMNLNLQYLCRYSELNMMLTPNNPNSINNNPNTN
Sbjct: 1   MLNNQKFLYVDIKEGNEYGYFYVYVLLMNLNLQYLCRYSELNMMLTPNNPNSINNNPNTN 60

Query: 61  HHLSDGGTSIGNSSATSPLSVAATANNNEQNQQCLVREQDQYMPMANYISFITSEANERC 120
           HHLSDGGTSIGNSSATSPLSVAATANNNEQNQQCLVREQDQYMPMANYISFITSEANERC
Sbjct: 61  HHLSDGGTSIGNSSATSPLSVAATANNNEQNQQCLVREQDQYMPMANYISFITSEANERC 120

Query: 121 QREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESIRTEPMLRRNVDYGPQVGM 180
           QREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESIRTEPMLRRNVDYGPQVGM
Sbjct: 121 QREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESIRTEPMLRRNVDYGPQVGM 180

Query: 181 ISPYGQAFQIGHVPAGMFDAMGGYYGGGGSCGPSTGNNSQL 222
           ISPYGQAFQIGHVPAGMFDAMGGYYGGGGSCGPSTGNNSQL
Sbjct: 181 ISPYGQAFQIGHVPAGMFDAMGGYYGGGGSCGPSTGNNSQL 221

[Close]
BLAST of Csa3G055940 vs. NCBI nr
Match: gi|700200905|gb|KGN56038.1| (hypothetical protein Csa_3G049440 [Cucumis sativus])

HSP 1 Score: 390.2 bits (1001), Expect = 2.4e-105
Identity = 196/239 (82.01%), Postives = 202/239 (84.52%), Query Frame = 1 

Query: 12  IKEGNEYGYFYVYVLLMNLNLQYLCRYSELNMMLTPNNPNSINNNPNTNHHLSDGGTSIG 71
           +KEGNEYGYFYVYV+LMNLNL+YLCRYS LN MLTPNNP SIN+NPNTN HLS+GGTSIG
Sbjct: 1   MKEGNEYGYFYVYVILMNLNLKYLCRYSGLNTMLTPNNPTSINSNPNTNQHLSNGGTSIG 60

Query: 72  NSSATSPLSVAATANNNEQNQQCLVREQDQYMPMAN------------------------ 131
           NSSATSPLSVAATANNNEQNQQCLVREQDQYMPMAN                        
Sbjct: 61  NSSATSPLSVAATANNNEQNQQCLVREQDQYMPMANVIRIMKRILPSHAKISDDTKETIQ 120

Query: 132 -----YISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESI 191
                YISFITSEANERCQREQRKTVTAEDVLWAMGKLGFD+YIEPLTVFLNRYRESESI
Sbjct: 121 ECVSEYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESI 180

Query: 192 RTEPMLRRNVDYGPQVGMISPYGQAFQIGHVPAGMFDAMGGYYGGGGSCGPSTGNNSQL 222
           RTEPMLRRNVDYG QVGMISPYGQAFQIG VPAGMFDAMGGYYGGGGS GPS GNNSQL
Sbjct: 181 RTEPMLRRNVDYGAQVGMISPYGQAFQIGQVPAGMFDAMGGYYGGGGSGGPSAGNNSQL 239

[Close]
BLAST of Csa3G055940 vs. NCBI nr
Match: gi|659096616|ref|XP_008449191.1| (PREDICTED: nuclear transcription factor Y subunit B-9 [Cucumis melo])

HSP 1 Score: 317.0 bits (811), Expect = 2.6e-83
Identity = 161/210 (76.67%), Postives = 169/210 (80.48%), Query Frame = 1 

Query: 43  MMLTPNNPNSINNNPNTNHHLSDGGTSIGNSSATSPLSVAATANNNEQNQQCLVREQDQY 102
           MM+TPN   SINN PN+NHHLS+GGT+ GNSSATSPLSVAATANNNEQNQQC+VREQDQY
Sbjct: 1   MMVTPNKATSINNTPNSNHHLSNGGTATGNSSATSPLSVAATANNNEQNQQCVVREQDQY 60

Query: 103 MPMAN-----------------------------YISFITSEANERCQREQRKTVTAEDV 162
           MP+AN                             YISFIT EANERCQREQRKTVTAEDV
Sbjct: 61  MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV 120

Query: 163 LWAMGKLGFDNYIEPLTVFLNRYRESES--IRTEPMLRRNVDYGPQVGMISPYGQAFQIG 222
           LWAMGKLGFD+YIEPLTVFLNRYRESES  IRTEP+LRRNVDYGPQVGMISPYGQAFQIG
Sbjct: 121 LWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMISPYGQAFQIG 180

[Close]
BLAST of Csa3G055940 vs. NCBI nr
Match: gi|700200904|gb|KGN56037.1| (hypothetical protein Csa_3G048940 [Cucumis sativus])

HSP 1 Score: 171.8 bits (434), Expect = 1.4e-39
Identity = 89/127 (70.08%), Postives = 93/127 (73.23%), Query Frame = 1 

Query: 43  MMLTPNNPNSINNNPNTNHHLSDGGTSIGNSSATSPLSVAATANNNEQNQQCLVREQDQY 102
           MMLTPN P SINN PNTNHHLS+GGT+ GNSSATSPLSVAATANNNEQNQQC+VREQDQY
Sbjct: 1   MMLTPNKPTSINNTPNTNHHLSNGGTATGNSSATSPLSVAATANNNEQNQQCVVREQDQY 60

Query: 103 MPMAN-----------------------------YISFITSEANERCQREQRKTVTAEDV 141
           MP+AN                             YISFIT EANERCQREQRKTVTAEDV
Sbjct: 61  MPIANVIRSMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV 120

[Close]
BLAST of Csa3G055940 vs. NCBI nr
Match: gi|728844156|gb|KHG23599.1| (Nuclear transcription factor Y subunit B-9 -like protein [Gossypium arboreum])

HSP 1 Score: 159.8 bits (403), Expect = 5.3e-36
Identity = 90/193 (46.63%), Postives = 122/193 (63.21%), Query Frame = 1 

Query: 51  NSINNNPNTNHHLSDGGTSIGNSSATSPLSVAATANNNEQNQQC--LVREQDQYMP---- 110
           +S N+N NTN  +++   + GN++ ++ +         +Q      ++R   + +P    
Sbjct: 26  DSSNSNTNTNTIINNNAANNGNAANSNTMPPPCMVREQDQYMPIANVIRIMRRILPTHAK 85

Query: 111 ------------MANYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVF 170
                       ++ YISFIT EANERCQREQRKT+TAEDVLWAMGKLGFD+Y+EPLTVF
Sbjct: 86  ISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMGKLGFDDYVEPLTVF 145

Query: 171 LNRYRESE----SIRTEPMLRRNVDYGPQVGMISPYGQAFQIGHVPAGMFD---AMGGYY 216
           LNRYRE+E    S+R+EPML+R +DYGP + M++PYG  F +GH   G+FD   AMGGY 
Sbjct: 146 LNRYRENENERTSLRSEPMLKRGIDYGPSM-MMAPYGAGFHVGH-QQGIFDGATAMGGYM 205

The following BLAST results are available for this feature:
BLAST of Csa3G055940 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NFYB9_ARATH1.2e-2744.13Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana GN=NFYB9 PE=1... [more]
NFYB6_ARATH4.0e-2353.77Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana GN=NFYB6 PE=1... [more]
NFYB2_ARATH2.1e-1635.71Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana GN=NFYB2 PE=2... [more]
NFYB_DICDI2.3e-1538.03Nuclear transcription factor Y subunit beta OS=Dictyostelium discoideum GN=nfyB ... [more]
NFYB8_ARATH5.2e-1545.45Nuclear transcription factor Y subunit B-8 OS=Arabidopsis thaliana GN=NFYB8 PE=2... [more]
BLAST of Csa3G055940 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L4W1_CUCSA1.3e-126100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G055940 PE=4 SV=1[more]
A0A0A0L2U1_CUCSA1.7e-10582.01Uncharacterized protein OS=Cucumis sativus GN=Csa_3G049440 PE=4 SV=1[more]
A0A0A0L645_CUCSA9.4e-4070.08Uncharacterized protein OS=Cucumis sativus GN=Csa_3G048940 PE=4 SV=1[more]
A0A0B0PGM2_GOSAR3.7e-3646.63Nuclear transcription factor Y subunit B-9-like protein OS=Gossypium arboreum GN... [more]
A0A0D2SEP9_GOSRA2.0e-3465.29Uncharacterized protein OS=Gossypium raimondii GN=B456_013G152500 PE=4 SV=1[more]
BLAST of Csa3G055940 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G21970.16.7e-2944.13 Histone superfamily protein[more]
AT5G47670.12.2e-2453.77 nuclear factor Y, subunit B6[more]
AT5G47640.11.2e-1735.71 nuclear factor Y, subunit B2[more]
AT2G37060.12.9e-1645.45 nuclear factor Y, subunit B8[more]
AT3G53340.18.5e-1645.78 nuclear factor Y, subunit B10[more]
BLAST of Csa3G055940 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700200906|gb|KGN56039.1|1.9e-126100.00hypothetical protein Csa_3G055940 [Cucumis sativus][more]
gi|700200905|gb|KGN56038.1|2.4e-10582.01hypothetical protein Csa_3G049440 [Cucumis sativus][more]
gi|659096616|ref|XP_008449191.1|2.6e-8376.67PREDICTED: nuclear transcription factor Y subunit B-9 [Cucumis melo][more]
gi|700200904|gb|KGN56037.1|1.4e-3970.08hypothetical protein Csa_3G048940 [Cucumis sativus][more]
gi|728844156|gb|KHG23599.1|5.3e-3646.63Nuclear transcription factor Y subunit B-9 -like protein [Gossypium arboreum][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003958CBFA_NFYB_domain
IPR009072Histone-fold
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0009738 abscisic acid-activated signaling pathway
biological_process GO:0045893 positive regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0046982 protein heterodimerization activity
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0033613 activating transcription factor binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU156763cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G055940.1Csa3G055940.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU156763CU156763transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003958Transcription factor CBF/NF-Y/archaeal histone domainPFAMPF00808CBFD_NFYB_HMFcoord: 107..137
score: 8.
IPR009072Histone-foldGENE3DG3DSA:1.10.20.10coord: 107..164
score: 1.2
IPR009072Histone-foldunknownSSF47113Histone-foldcoord: 107..165
score: 1.76
NoneNo IPR availablePRINTSPR00615CCAATSUBUNTAcoord: 101..119
score: 7.6E-11coord: 120..138
score: 7.6E-11coord: 139..157
score: 7.6
NoneNo IPR availablePANTHERPTHR11064CCAAT-BINDING TRANSCRIPTION FACTOR-RELATEDcoord: 73..204
score: 7.0
NoneNo IPR availablePANTHERPTHR11064:SF20NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6-RELATEDcoord: 73..204
score: 7.0