Cp4.1LG08g08440 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG08g08440
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionTranscription factor
LocationCp4.1LG08 : 6637103 .. 6637294 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAAGGAAACCATCCAAGAATGCGTCTGAGTATATCAGCTTCATTACTGGCGAGGTCAACGAGCGATGCCAAAGGGAGCAGCGTAAGACAGTGATAGCAGAGGATGTCCTTTGGGTCATGGGGAAGCTAGGGTTTGACGATTACATTGAGCCATTAATTATCTTTGATGGATCATCTCTACTCGAGTGA

mRNA sequence

ATGCAAAGGAAACCATCCAAGAATGCGTCTGAGTATATCAGCTTCATTACTGGCGAGGTCAACGAGCGATGCCAAAGGGAGCAGCGTAAGACAGTGATAGCAGAGGATGTCCTTTGGGTCATGGGGAAGCTAGGGTTTGACGATTACATTGAGCCATTAATTATCTTTGATGGATCATCTCTACTCGAGTGA

Coding sequence (CDS)

ATGCAAAGGAAACCATCCAAGAATGCGTCTGAGTATATCAGCTTCATTACTGGCGAGGTCAACGAGCGATGCCAAAGGGAGCAGCGTAAGACAGTGATAGCAGAGGATGTCCTTTGGGTCATGGGGAAGCTAGGGTTTGACGATTACATTGAGCCATTAATTATCTTTGATGGATCATCTCTACTCGAGTGA

Protein sequence

MQRKPSKNASEYISFITGEVNERCQREQRKTVIAEDVLWVMGKLGFDDYIEPLIIFDGSSLLE
BLAST of Cp4.1LG08g08440 vs. Swiss-Prot
Match: NFYB6_ARATH (Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana GN=NFYB6 PE=1 SV=2)

HSP 1 Score: 88.2 bits (217), Expect = 3.5e-17
Identity = 39/47 (82.98%), Postives = 42/47 (89.36%), Query Frame = 1

Query: 10  SEYISFITGEVNERCQREQRKTVIAEDVLWVMGKLGFDDYIEPLIIF 57
           SEYISFITGE NERCQREQRKT+ AEDVLW M KLGFDDYIEPL ++
Sbjct: 95  SEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLY 141

BLAST of Cp4.1LG08g08440 vs. Swiss-Prot
Match: NFYB9_ARATH (Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana GN=NFYB9 PE=1 SV=2)

HSP 1 Score: 85.5 bits (210), Expect = 2.3e-16
Identity = 35/47 (74.47%), Postives = 42/47 (89.36%), Query Frame = 1

Query: 10  SEYISFITGEVNERCQREQRKTVIAEDVLWVMGKLGFDDYIEPLIIF 57
           SEYISF+TGE NERCQREQRKT+ AED+LW M KLGFD+Y++PL +F
Sbjct: 96  SEYISFVTGEANERCQREQRKTITAEDILWAMSKLGFDNYVDPLTVF 142

BLAST of Cp4.1LG08g08440 vs. Swiss-Prot
Match: NFYB3_ARATH (Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana GN=NFYB3 PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 5.8e-12
Identity = 28/47 (59.57%), Postives = 40/47 (85.11%), Query Frame = 1

Query: 10  SEYISFITGEVNERCQREQRKTVIAEDVLWVMGKLGFDDYIEPLIIF 57
           SE+ISFITGE +++CQRE+RKT+  +D+LW M  LGF+DY+EPL ++
Sbjct: 58  SEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVY 104

BLAST of Cp4.1LG08g08440 vs. Swiss-Prot
Match: NFYB3_ORYSJ (Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica GN=NFYB3 PE=1 SV=2)

HSP 1 Score: 69.7 bits (169), Expect = 1.3e-11
Identity = 28/47 (59.57%), Postives = 39/47 (82.98%), Query Frame = 1

Query: 10  SEYISFITGEVNERCQREQRKTVIAEDVLWVMGKLGFDDYIEPLIIF 57
           SE+ISFIT E +++CQRE+RKT+  +D+LW M  LGF+DYIEPL ++
Sbjct: 75  SEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVY 121

BLAST of Cp4.1LG08g08440 vs. Swiss-Prot
Match: NFYB_MAIZE (Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.3e-11
Identity = 28/47 (59.57%), Postives = 39/47 (82.98%), Query Frame = 1

Query: 10  SEYISFITGEVNERCQREQRKTVIAEDVLWVMGKLGFDDYIEPLIIF 57
           SE+ISFIT E +++CQRE+RKT+  +D+LW M  LGF+DYIEPL ++
Sbjct: 68  SEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVY 114

BLAST of Cp4.1LG08g08440 vs. TrEMBL
Match: A0A061FC04_THECC (Ccaat-binding transcription factor subunit A, putative OS=Theobroma cacao GN=TCM_030636 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.6e-16
Identity = 41/49 (83.67%), Postives = 44/49 (89.80%), Query Frame = 1

Query: 10  SEYISFITGEVNERCQREQRKTVIAEDVLWVMGKLGFDDYIEPLIIFDG 59
           SEYISFITGE NERCQREQRKT+ AEDVLW MGKLGFDDY+EPL +F G
Sbjct: 88  SEYISFITGEANERCQREQRKTITAEDVLWAMGKLGFDDYVEPLTVFLG 136

BLAST of Cp4.1LG08g08440 vs. TrEMBL
Match: A0A0E3N6S2_GOSBA (Leafy cotyledon 1A OS=Gossypium barbadense GN=LEC1A PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.5e-16
Identity = 40/47 (85.11%), Postives = 43/47 (91.49%), Query Frame = 1

Query: 10  SEYISFITGEVNERCQREQRKTVIAEDVLWVMGKLGFDDYIEPLIIF 57
           SEYISFITGE NERCQREQRKT+ AEDVLW MGKLGFDDY+EPL +F
Sbjct: 76  SEYISFITGEANERCQREQRKTITAEDVLWAMGKLGFDDYVEPLTVF 122

BLAST of Cp4.1LG08g08440 vs. TrEMBL
Match: A0A0D2SEP9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G152500 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.5e-16
Identity = 40/47 (85.11%), Postives = 43/47 (91.49%), Query Frame = 1

Query: 10  SEYISFITGEVNERCQREQRKTVIAEDVLWVMGKLGFDDYIEPLIIF 57
           SEYISFITGE NERCQREQRKT+ AEDVLW MGKLGFDDY+EPL +F
Sbjct: 91  SEYISFITGEANERCQREQRKTITAEDVLWAMGKLGFDDYVEPLTVF 137

BLAST of Cp4.1LG08g08440 vs. TrEMBL
Match: A0A0B0PGM2_GOSAR (Nuclear transcription factor Y subunit B-9-like protein OS=Gossypium arboreum GN=F383_03265 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.5e-16
Identity = 40/47 (85.11%), Postives = 43/47 (91.49%), Query Frame = 1

Query: 10  SEYISFITGEVNERCQREQRKTVIAEDVLWVMGKLGFDDYIEPLIIF 57
           SEYISFITGE NERCQREQRKT+ AEDVLW MGKLGFDDY+EPL +F
Sbjct: 99  SEYISFITGEANERCQREQRKTITAEDVLWAMGKLGFDDYVEPLTVF 145

BLAST of Cp4.1LG08g08440 vs. TrEMBL
Match: B9S9S1_RICCO (Ccaat-binding transcription factor subunit A, putative OS=Ricinus communis GN=RCOM_0521850 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.0e-15
Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 1

Query: 10  SEYISFITGEVNERCQREQRKTVIAEDVLWVMGKLGFDDYIEPLIIF 57
           SEYISFITGE N+RCQREQRKT+ AEDVLW MGKLGFDDY+EPL +F
Sbjct: 111 SEYISFITGEANDRCQREQRKTITAEDVLWAMGKLGFDDYVEPLTLF 157

BLAST of Cp4.1LG08g08440 vs. TAIR10
Match: AT5G47670.1 (AT5G47670.1 nuclear factor Y, subunit B6)

HSP 1 Score: 88.2 bits (217), Expect = 2.0e-18
Identity = 39/47 (82.98%), Postives = 42/47 (89.36%), Query Frame = 1

Query: 10  SEYISFITGEVNERCQREQRKTVIAEDVLWVMGKLGFDDYIEPLIIF 57
           SEYISFITGE NERCQREQRKT+ AEDVLW M KLGFDDYIEPL ++
Sbjct: 95  SEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLY 141

BLAST of Cp4.1LG08g08440 vs. TAIR10
Match: AT1G21970.1 (AT1G21970.1 Histone superfamily protein)

HSP 1 Score: 85.5 bits (210), Expect = 1.3e-17
Identity = 35/47 (74.47%), Postives = 42/47 (89.36%), Query Frame = 1

Query: 10  SEYISFITGEVNERCQREQRKTVIAEDVLWVMGKLGFDDYIEPLIIF 57
           SEYISF+TGE NERCQREQRKT+ AED+LW M KLGFD+Y++PL +F
Sbjct: 96  SEYISFVTGEANERCQREQRKTITAEDILWAMSKLGFDNYVDPLTVF 142

BLAST of Cp4.1LG08g08440 vs. TAIR10
Match: AT4G14540.1 (AT4G14540.1 nuclear factor Y, subunit B3)

HSP 1 Score: 70.9 bits (172), Expect = 3.3e-13
Identity = 28/47 (59.57%), Postives = 40/47 (85.11%), Query Frame = 1

Query: 10  SEYISFITGEVNERCQREQRKTVIAEDVLWVMGKLGFDDYIEPLIIF 57
           SE+ISFITGE +++CQRE+RKT+  +D+LW M  LGF+DY+EPL ++
Sbjct: 58  SEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVY 104

BLAST of Cp4.1LG08g08440 vs. TAIR10
Match: AT5G47640.1 (AT5G47640.1 nuclear factor Y, subunit B2)

HSP 1 Score: 69.3 bits (168), Expect = 9.5e-13
Identity = 26/47 (55.32%), Postives = 40/47 (85.11%), Query Frame = 1

Query: 10  SEYISFITGEVNERCQREQRKTVIAEDVLWVMGKLGFDDYIEPLIIF 57
           SE+ISF+TGE +++CQ+E+RKT+  +D+LW M  LGF+DY+EPL ++
Sbjct: 64  SEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVY 110

BLAST of Cp4.1LG08g08440 vs. TAIR10
Match: AT2G38880.8 (AT2G38880.8 nuclear factor Y, subunit B1)

HSP 1 Score: 68.6 bits (166), Expect = 1.6e-12
Identity = 28/47 (59.57%), Postives = 39/47 (82.98%), Query Frame = 1

Query: 10  SEYISFITGEVNERCQREQRKTVIAEDVLWVMGKLGFDDYIEPLIIF 57
           SE+ISFIT E +++CQ+E+RKTV  +D+LW M  LGF+DY+EPL I+
Sbjct: 58  SEFISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIY 104

BLAST of Cp4.1LG08g08440 vs. NCBI nr
Match: gi|590605470|ref|XP_007020494.1| (Ccaat-binding transcription factor subunit A, putative [Theobroma cacao])

HSP 1 Score: 92.8 bits (229), Expect = 2.3e-16
Identity = 41/49 (83.67%), Postives = 44/49 (89.80%), Query Frame = 1

Query: 10  SEYISFITGEVNERCQREQRKTVIAEDVLWVMGKLGFDDYIEPLIIFDG 59
           SEYISFITGE NERCQREQRKT+ AEDVLW MGKLGFDDY+EPL +F G
Sbjct: 88  SEYISFITGEANERCQREQRKTITAEDVLWAMGKLGFDDYVEPLTVFLG 136

BLAST of Cp4.1LG08g08440 vs. NCBI nr
Match: gi|659096616|ref|XP_008449191.1| (PREDICTED: nuclear transcription factor Y subunit B-9 [Cucumis melo])

HSP 1 Score: 92.4 bits (228), Expect = 3.0e-16
Identity = 42/47 (89.36%), Postives = 43/47 (91.49%), Query Frame = 1

Query: 10  SEYISFITGEVNERCQREQRKTVIAEDVLWVMGKLGFDDYIEPLIIF 57
           SEYISFITGE NERCQREQRKTV AEDVLW MGKLGFDDYIEPL +F
Sbjct: 93  SEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVF 139

BLAST of Cp4.1LG08g08440 vs. NCBI nr
Match: gi|805305825|gb|AKB11452.1| (leafy cotyledon 1A [Gossypium barbadense])

HSP 1 Score: 91.7 bits (226), Expect = 5.1e-16
Identity = 40/47 (85.11%), Postives = 43/47 (91.49%), Query Frame = 1

Query: 10  SEYISFITGEVNERCQREQRKTVIAEDVLWVMGKLGFDDYIEPLIIF 57
           SEYISFITGE NERCQREQRKT+ AEDVLW MGKLGFDDY+EPL +F
Sbjct: 76  SEYISFITGEANERCQREQRKTITAEDVLWAMGKLGFDDYVEPLTVF 122

BLAST of Cp4.1LG08g08440 vs. NCBI nr
Match: gi|823266462|ref|XP_012465928.1| (PREDICTED: nuclear transcription factor Y subunit B-9 [Gossypium raimondii])

HSP 1 Score: 91.7 bits (226), Expect = 5.1e-16
Identity = 40/47 (85.11%), Postives = 43/47 (91.49%), Query Frame = 1

Query: 10  SEYISFITGEVNERCQREQRKTVIAEDVLWVMGKLGFDDYIEPLIIF 57
           SEYISFITGE NERCQREQRKT+ AEDVLW MGKLGFDDY+EPL +F
Sbjct: 91  SEYISFITGEANERCQREQRKTITAEDVLWAMGKLGFDDYVEPLTVF 137

BLAST of Cp4.1LG08g08440 vs. NCBI nr
Match: gi|729331191|ref|XP_010536738.1| (PREDICTED: nuclear transcription factor Y subunit B-9 [Tarenaya hassleriana])

HSP 1 Score: 91.7 bits (226), Expect = 5.1e-16
Identity = 40/47 (85.11%), Postives = 43/47 (91.49%), Query Frame = 1

Query: 10  SEYISFITGEVNERCQREQRKTVIAEDVLWVMGKLGFDDYIEPLIIF 57
           SEYISF+TGE NERCQREQRKT+ AEDVLW MGKLGFDDY+EPL IF
Sbjct: 99  SEYISFVTGEANERCQREQRKTITAEDVLWAMGKLGFDDYVEPLTIF 145

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
NFYB6_ARATH3.5e-1782.98Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana GN=NFYB6 PE=1... [more]
NFYB9_ARATH2.3e-1674.47Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana GN=NFYB9 PE=1... [more]
NFYB3_ARATH5.8e-1259.57Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana GN=NFYB3 PE=2... [more]
NFYB3_ORYSJ1.3e-1159.57Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica GN=NF... [more]
NFYB_MAIZE1.3e-1159.57Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A061FC04_THECC1.6e-1683.67Ccaat-binding transcription factor subunit A, putative OS=Theobroma cacao GN=TCM... [more]
A0A0E3N6S2_GOSBA3.5e-1685.11Leafy cotyledon 1A OS=Gossypium barbadense GN=LEC1A PE=2 SV=1[more]
A0A0D2SEP9_GOSRA3.5e-1685.11Uncharacterized protein OS=Gossypium raimondii GN=B456_013G152500 PE=4 SV=1[more]
A0A0B0PGM2_GOSAR3.5e-1685.11Nuclear transcription factor Y subunit B-9-like protein OS=Gossypium arboreum GN... [more]
B9S9S1_RICCO1.0e-1582.98Ccaat-binding transcription factor subunit A, putative OS=Ricinus communis GN=RC... [more]
Match NameE-valueIdentityDescription
AT5G47670.12.0e-1882.98 nuclear factor Y, subunit B6[more]
AT1G21970.11.3e-1774.47 Histone superfamily protein[more]
AT4G14540.13.3e-1359.57 nuclear factor Y, subunit B3[more]
AT5G47640.19.5e-1355.32 nuclear factor Y, subunit B2[more]
AT2G38880.81.6e-1259.57 nuclear factor Y, subunit B1[more]
Match NameE-valueIdentityDescription
gi|590605470|ref|XP_007020494.1|2.3e-1683.67Ccaat-binding transcription factor subunit A, putative [Theobroma cacao][more]
gi|659096616|ref|XP_008449191.1|3.0e-1689.36PREDICTED: nuclear transcription factor Y subunit B-9 [Cucumis melo][more]
gi|805305825|gb|AKB11452.1|5.1e-1685.11leafy cotyledon 1A [Gossypium barbadense][more]
gi|823266462|ref|XP_012465928.1|5.1e-1685.11PREDICTED: nuclear transcription factor Y subunit B-9 [Gossypium raimondii][more]
gi|729331191|ref|XP_010536738.1|5.1e-1685.11PREDICTED: nuclear transcription factor Y subunit B-9 [Tarenaya hassleriana][more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
Vocabulary: INTERPRO
TermDefinition
IPR009072Histone-fold
IPR003958CBFA_NFYB_domain
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009738 abscisic acid-activated signaling pathway
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0033613 activating transcription factor binding
molecular_function GO:0046982 protein heterodimerization activity
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG08g08440.1Cp4.1LG08g08440.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003958Transcription factor CBF/NF-Y/archaeal histone domainPFAMPF00808CBFD_NFYB_HMFcoord: 7..41
score: 1.
IPR009072Histone-foldGENE3DG3DSA:1.10.20.10coord: 7..53
score: 2.2
IPR009072Histone-foldunknownSSF47113Histone-foldcoord: 8..55
score: 1.02
NoneNo IPR availablePRINTSPR00615CCAATSUBUNTAcoord: 5..23
score: 1.2E-6coord: 24..42
score: 1.2E-6coord: 43..61
score: 1.
NoneNo IPR availablePANTHERPTHR11064CCAAT-BINDING TRANSCRIPTION FACTOR-RELATEDcoord: 10..56
score: 8.7
NoneNo IPR availablePANTHERPTHR11064:SF20NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6-RELATEDcoord: 10..56
score: 8.7

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG08g08440Csa3G055940Cucumber (Chinese Long) v2cpecuB850
The following gene(s) are paralogous to this gene:

None