Csa3G044550 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G044550
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 3114185 .. 3115648 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAATTATATTATTGAAAGGAGGTGAAAACGAGGTCGTTTAGTGTGCGCCTTATCATCGGAAGAGCAAGAATATGGGCTTAGCCTTTCATGATTCCATCTCATCGCAACGCTACAAAACATCAATTTTTTTGTCTTCCATTAATATATATTTTTTTATATATCATTTGATTTATTAAACCCAAAAGAAAAAAAAAAAAAAAACCAAATAATTGTTTTTGGTTTGGTTTTCCGTTCGTAGCTTTTGGCTATAAGAACGCTTCGCAATCTCTCTCTCTCTCTCTCTTTCTCTTTCTCTTCCCCCGGAATCGCATTTTTTCTTCCACCACCGCCGGAACGTCTCCTCATTTCCACCCTCTGCACCTCTCTTCATACGGTAAACCATTTTATTTTCCCTTTTCTTGCTTTTCTACAGAAATTTCTCCCCCAATAAACAGAATATGATTGCTGGGTTTTGTTGTTGTTGTTGTTGCTGCTGCTGCTGCTGGTGGTGGTGGAAGGTTCTTGAACTTCAATTGTATTACGTTTTTTCTTCAGCAGATCGTTTTTTGGAATTTGAAATCTGTTTTTTGGTGGGGCCTAGAGTGAGGAATTGCGCGATCGGATCTGTTTTGGATTTAGAGATCCATTGTTGGGACGGACTTTGTGGTGTGTTTTCATTTTGTGATGCCTATTGTTGCTTTTTTTTTTTTCATTTGGTAGTTGTTTGAGTGTAATCCTTTTTGTGGGTGGAAATTACGGCGGCCATTTTCCTTTTGCTTTATTCAAATTCTGCTCTCTTGTTGCTCGTGGCAATGCTTGTGGAAGGTTTTTTTTTTGCATTTTCATATACTTGGAAGAGATTTTTCTGATCTGGGATCACTATTTTCTTTTATATGATTATGTGGTGGAAGGACTATCAACTATGCAAGAACTAGATCACCATAATTCTATAAATACAATAGGAGCAGGGGACTCGAACCTCATACTTTATGGTTATTAACACATACAATGCCAGATGCGTCATTCTCATTGTTCTAGATGCCACAAATGGTTCTTTGGCTTATTGGATTCGTTCAAGAGATTAGAGGCAGTTTAACACTTTAACTGCGGTACACCATAATTTTCACATTTCATTGACGACTATAAATTAGTTCTTTTATCCTATGGGAAAACCCATATGATAATCAAATTATTGTGATTCATTAATGAAAGGGAGAGGAGAAAAAGAAAAAGAGAAGGCGTTGATGCACGGATAGTCAACTTCCCCTGAGGAAGTTTGAGTTGGGAAGTCGTTGATGCTAGTTTTTGTTTTGTTAATTATTGATTTATTAATTATTATTATTTGTTCTTGAAGTTATGTAATATCGAAAAGCTACTTGAGCTATTAATTTTTTTTCCCAGAAAATATTTTTTTACTAACGCACTATCTTTTGTTCTATTAAATTCCTAATGCACTCAAAATATTGTCTCGGCCAGAATAG

mRNA sequence

ATGGAAATTATATTATTGAAAGGAGGTGAAAACGAGCTTTTGGCTATAAGAACGCTTCGCAATCTCTCTCTCTCTCTCTCTTTCTCTTTCTCTTCCCCCGGAATCGCATTTTTTCTTCCACCACCGCCGGAACGTCTCCTCATTTCCACCCTCTGCACCTCTCTTCATACGGTTCTTGAACTTCAATTGTATTACGTTTTTTCTTCAGCAGATCGTTTTTTGGAATTTGAAATCTGTTTTTTGGTGGGGCCTAGAGTGAGGAATTGCGCGATCGGATCTGTTTTGGATTTAGAGATCCATTGTTGGGACGGACTTTGTGAATAG

Coding sequence (CDS)

ATGGAAATTATATTATTGAAAGGAGGTGAAAACGAGCTTTTGGCTATAAGAACGCTTCGCAATCTCTCTCTCTCTCTCTCTTTCTCTTTCTCTTCCCCCGGAATCGCATTTTTTCTTCCACCACCGCCGGAACGTCTCCTCATTTCCACCCTCTGCACCTCTCTTCATACGGTTCTTGAACTTCAATTGTATTACGTTTTTTCTTCAGCAGATCGTTTTTTGGAATTTGAAATCTGTTTTTTGGTGGGGCCTAGAGTGAGGAATTGCGCGATCGGATCTGTTTTGGATTTAGAGATCCATTGTTGGGACGGACTTTGTGAATAG

Protein sequence

MEIILLKGGENELLAIRTLRNLSLSLSFSFSSPGIAFFLPPPPERLLISTLCTSLHTVLELQLYYVFSSADRFLEFEICFLVGPRVRNCAIGSVLDLEIHCWDGLCE*
Homology
[Close]
BLAST of Csa3G044550 vs. TrEMBL
Match: A0A0A0L213_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G044550 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 5.6e-54
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1 

Query: 1   MEIILLKGGENELLAIRTLRNLSLSLSFSFSSPGIAFFLPPPPERLLISTLCTSLHTVLE 60
           MEIILLKGGENELLAIRTLRNLSLSLSFSFSSPGIAFFLPPPPERLLISTLCTSLHTVLE
Sbjct: 1   MEIILLKGGENELLAIRTLRNLSLSLSFSFSSPGIAFFLPPPPERLLISTLCTSLHTVLE 60

Query: 61  LQLYYVFSSADRFLEFEICFLVGPRVRNCAIGSVLDLEIHCWDGLCE 108
           LQLYYVFSSADRFLEFEICFLVGPRVRNCAIGSVLDLEIHCWDGLCE
Sbjct: 61  LQLYYVFSSADRFLEFEICFLVGPRVRNCAIGSVLDLEIHCWDGLCE 107

[Close]
BLAST of Csa3G044550 vs. NCBI nr
Match: gi|700200857|gb|KGN55990.1| (hypothetical protein Csa_3G044550 [Cucumis sativus])

HSP 1 Score: 218.0 bits (554), Expect = 8.0e-54
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1 

Query: 1   MEIILLKGGENELLAIRTLRNLSLSLSFSFSSPGIAFFLPPPPERLLISTLCTSLHTVLE 60
           MEIILLKGGENELLAIRTLRNLSLSLSFSFSSPGIAFFLPPPPERLLISTLCTSLHTVLE
Sbjct: 1   MEIILLKGGENELLAIRTLRNLSLSLSFSFSSPGIAFFLPPPPERLLISTLCTSLHTVLE 60

Query: 61  LQLYYVFSSADRFLEFEICFLVGPRVRNCAIGSVLDLEIHCWDGLCE 108
           LQLYYVFSSADRFLEFEICFLVGPRVRNCAIGSVLDLEIHCWDGLCE
Sbjct: 61  LQLYYVFSSADRFLEFEICFLVGPRVRNCAIGSVLDLEIHCWDGLCE 107

The following BLAST results are available for this feature:
BLAST of Csa3G044550 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L213_CUCSA5.6e-54100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G044550 PE=4 SV=1[more]
BLAST of Csa3G044550 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700200857|gb|KGN55990.1|8.0e-54100.00hypothetical protein Csa_3G044550 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G044550.1Csa3G044550.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa3G044550Cla97C10G188450Watermelon (97103) v2cuwmbB181
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G044550Cucurbita moschata (Rifu)cmocuB315
Csa3G044550Cucurbita moschata (Rifu)cmocuB815
Csa3G044550Melon (DHL92) v3.5.1cumeB243
Csa3G044550Watermelon (Charleston Gray)cuwcgB189
Csa3G044550Watermelon (Charleston Gray)cuwcgB192
Csa3G044550Watermelon (97103) v1cuwmB201
Csa3G044550Cucurbita pepo (Zucchini)cpecuB213
Csa3G044550Cucurbita pepo (Zucchini)cpecuB850
Csa3G044550Bottle gourd (USVL1VR-Ls)culsiB160
Csa3G044550Bottle gourd (USVL1VR-Ls)culsiB228
Csa3G044550Cucumber (Gy14) v2cgybcuB109
Csa3G044550Melon (DHL92) v3.6.1cumedB224
Csa3G044550Silver-seed gourdcarcuB0014
Csa3G044550Wax gourdcuwgoB218
Csa3G044550Cucumber (Chinese Long) v2cucuB126
Csa3G044550Cucumber (Gy14) v1cgycuB014
Csa3G044550Cucumber (Gy14) v1cgycuB154
Csa3G044550Cucurbita maxima (Rimu)cmacuB327
Csa3G044550Cucurbita maxima (Rimu)cmacuB825