Cla97C10G188450 (gene) Watermelon (97103) v2

Overview
NameCla97C10G188450
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionUnknown protein
LocationCla97Chr10 : 4504942 .. 4505172 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTCTTCAACTTCAATTGAATTGTGTTTTATCTTCAGTAGATCGTTTCCGAATTACTGTTTGTTTAATCGGAGTTTTGGAATTTGAAATCTGTTGTTTGGTGGGGCCTAGAATGAAGAATTGCGCGATCGGATCTGTTTTGGATTCAGAGATCCATGGTTGGGAGGGATTTTGTTGTGTGTTTTCACTTTGTGAGGGCTATTATAACGCTTTTTCTTTAGGTAGTTGGTGA

mRNA sequence

GTTCTTCAACTTCAATTGAATTGTGTTTTATCTTCAGTAGATCGTTTCCGAATTACTGTTTGTTTAATCGGAGTTTTGGAATTTGAAATCTGTTGTTTGGTGGGGCCTAGAATGAAGAATTGCGCGATCGGATCTGTTTTGGATTCAGAGATCCATGGTTGGGAGGGATTTTGTTGTGTGTTTTCACTTTGTGAGGGCTATTATAACGCTTTTTCTTTAGGTAGTTGGTGA

Coding sequence (CDS)

GTTCTTCAACTTCAATTGAATTGTGTTTTATCTTCAGTAGATCGTTTCCGAATTACTGTTTGTTTAATCGGAGTTTTGGAATTTGAAATCTGTTGTTTGGTGGGGCCTAGAATGAAGAATTGCGCGATCGGATCTGTTTTGGATTCAGAGATCCATGGTTGGGAGGGATTTTGTTGTGTGTTTTCACTTTGTGAGGGCTATTATAACGCTTTTTCTTTAGGTAGTTGGTGA

Protein sequence

VLQLQLNCVLSSVDRFRITVCLIGVLEFEICCLVGPRMKNCAIGSVLDSEIHGWEGFCCVFSLCEGYYNAFSLGSW
Homology
[Close]
BLAST of Cla97C10G188450 vs. NCBI nr
Match: KGN55990.1 (hypothetical protein Csa_3G044550 [Cucumis sativus])

HSP 1 Score: 72.4 bits (176), Expect = 7.5e-10
Identity = 37/58 (63.79%), Postives = 41/58 (70.69%), Query Frame = 0 

Query: 1   VLQLQLNCVLSSVDRFRITVCLIGVLEFEICCLVGPRMKNCAIGSVLDSEIHGWEGFC 59
           VL+LQL  V SS DRF         LEFEIC LVGPR++NCAIGSVLD EIH W+G C
Sbjct: 58  VLELQLYYVFSSADRF---------LEFEICFLVGPRVRNCAIGSVLDLEIHCWDGLC 106

[Close]
BLAST of Cla97C10G188450 vs. TrEMBL
Match: tr|A0A0A0L213|A0A0A0L213_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G044550 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.9e-10
Identity = 37/58 (63.79%), Postives = 41/58 (70.69%), Query Frame = 0 

Query: 1   VLQLQLNCVLSSVDRFRITVCLIGVLEFEICCLVGPRMKNCAIGSVLDSEIHGWEGFC 59
           VL+LQL  V SS DRF         LEFEIC LVGPR++NCAIGSVLD EIH W+G C
Sbjct: 58  VLELQLYYVFSSADRF---------LEFEICFLVGPRVRNCAIGSVLDLEIHCWDGLC 106

The following BLAST results are available for this feature:
BLAST of Cla97C10G188450 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN55990.17.5e-1063.79hypothetical protein Csa_3G044550 [Cucumis sativus][more]
BLAST of Cla97C10G188450 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L213|A0A0A0L213_CUCSA4.9e-1063.79Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G044550 PE=4 SV=1[more]
BLAST of Cla97C10G188450 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C10G188450 vs. TAIR10
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C10G188450.1Cla97C10G188450.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C10G188450Csa3G044550Cucumber (Chinese Long) v2cuwmbB181
Cla97C10G188450CsaV3_3G003880Cucumber (Chinese Long) v3cucwmbB182
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C10G188450Bottle gourd (USVL1VR-Ls)lsiwmbB395
Cla97C10G188450Melon (DHL92) v3.6.1medwmbB415
Cla97C10G188450Watermelon (Charleston Gray)wcgwmbB038
Cla97C10G188450Watermelon (Charleston Gray)wcgwmbB039
Cla97C10G188450Watermelon (97103) v1wmwmbB052
Cla97C10G188450Watermelon (97103) v1wmwmbB057
Cla97C10G188450Wax gourdwgowmbB003
Cla97C10G188450Melon (DHL92) v3.5.1mewmbB430
Cla97C10G188450Silver-seed gourdcarwmbB0013
Cla97C10G188450Cucumber (Gy14) v2cgybwmbB174
Cla97C10G188450Cucumber (Gy14) v1cgywmbB016
Cla97C10G188450Cucurbita maxima (Rimu)cmawmbB338
Cla97C10G188450Cucurbita maxima (Rimu)cmawmbB845
Cla97C10G188450Cucurbita moschata (Rifu)cmowmbB321
Cla97C10G188450Cucurbita moschata (Rifu)cmowmbB819
Cla97C10G188450Cucurbita moschata (Rifu)cmowmbB824
Cla97C10G188450Wild cucumber (PI 183967)cpiwmbB184
Cla97C10G188450Bottle gourd (USVL1VR-Ls)lsiwmbB042