Csa2G418900 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa2G418900
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr2 : 21746858 .. 21747121 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACAAGAAAATTTACTCGGAGAGGATTTTAAGCCAAAACAGGACGCTGTTCCCAATTAATGCATGCATCCGATTTGACGCCCTAAAGCTGTTTAACAACGTGGTGATGGTTGCGCCGATGATCCCATCAATCATTGTTGATCGATGCTTACAACTCCGAGCAGTTCTCCGACAATGTCCACCAAACCACTACTGTTACAGAACAGACTTAACAGCTGAAAGTTCACAGCAAACCAACACAAAAGTTATCTCCCCTTACTAA

mRNA sequence

ATGAACAAGAAAATTTACTCGGAGAGGATTTTAAGCCAAAACAGGACGCTGTTCCCAATTAATGCATGCATCCGATTTGACGCCCTAAAGCTGTTTAACAACGTGGTGATGGTTGCGCCGATGATCCCATCAATCATTGTTGATCGATGCTTACAACTCCGAGCAGTTCTCCGACAATGTCCACCAAACCACTACTGTTACAGAACAGACTTAACAGCTGAAAGTTCACAGCAAACCAACACAAAAGTTATCTCCCCTTACTAA

Coding sequence (CDS)

ATGAACAAGAAAATTTACTCGGAGAGGATTTTAAGCCAAAACAGGACGCTGTTCCCAATTAATGCATGCATCCGATTTGACGCCCTAAAGCTGTTTAACAACGTGGTGATGGTTGCGCCGATGATCCCATCAATCATTGTTGATCGATGCTTACAACTCCGAGCAGTTCTCCGACAATGTCCACCAAACCACTACTGTTACAGAACAGACTTAACAGCTGAAAGTTCACAGCAAACCAACACAAAAGTTATCTCCCCTTACTAA

Protein sequence

MNKKIYSERILSQNRTLFPINACIRFDALKLFNNVVMVAPMIPSIIVDRCLQLRAVLRQCPPNHYCYRTDLTAESSQQTNTKVISPY*
Homology
[Close]
BLAST of Csa2G418900 vs. TrEMBL
Match: A0A0A0LMW2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G418900 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 1.8e-42
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 1 

Query: 1  MNKKIYSERILSQNRTLFPINACIRFDALKLFNNVVMVAPMIPSIIVDRCLQLRAVLRQC 60
          MNKKIYSERILSQNRTLFPINACIRFDALKLFNNVVMVAPMIPSIIVDRCLQLRAVLRQC
Sbjct: 1  MNKKIYSERILSQNRTLFPINACIRFDALKLFNNVVMVAPMIPSIIVDRCLQLRAVLRQC 60

Query: 61 PPNHYCYRTDLTAESSQQTNTKVISPY 88
          PPNHYCYRTDLTAESSQQTNTKVISPY
Sbjct: 61 PPNHYCYRTDLTAESSQQTNTKVISPY 87

[Close]
BLAST of Csa2G418900 vs. NCBI nr
Match: gi|700208136|gb|KGN63255.1| (hypothetical protein Csa_2G418900 [Cucumis sativus])

HSP 1 Score: 179.5 bits (454), Expect = 2.6e-42
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 1 

Query: 1  MNKKIYSERILSQNRTLFPINACIRFDALKLFNNVVMVAPMIPSIIVDRCLQLRAVLRQC 60
          MNKKIYSERILSQNRTLFPINACIRFDALKLFNNVVMVAPMIPSIIVDRCLQLRAVLRQC
Sbjct: 1  MNKKIYSERILSQNRTLFPINACIRFDALKLFNNVVMVAPMIPSIIVDRCLQLRAVLRQC 60

Query: 61 PPNHYCYRTDLTAESSQQTNTKVISPY 88
          PPNHYCYRTDLTAESSQQTNTKVISPY
Sbjct: 61 PPNHYCYRTDLTAESSQQTNTKVISPY 87

The following BLAST results are available for this feature:
BLAST of Csa2G418900 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LMW2_CUCSA1.8e-42100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G418900 PE=4 SV=1[more]
BLAST of Csa2G418900 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208136|gb|KGN63255.1|2.6e-42100.00hypothetical protein Csa_2G418900 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa2G418900.1Csa2G418900.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa2G418900ClCG02G008660Watermelon (Charleston Gray)cuwcgB123
Csa2G418900CSPI02G26530Wild cucumber (PI 183967)cpicuB065
Csa2G418900Cp4.1LG16g04570Cucurbita pepo (Zucchini)cpecuB269
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa2G418900Cucumber (Gy14) v2cgybcuB057
Csa2G418900Cucumber (Gy14) v2cgybcuB248
Csa2G418900Cucumber (Gy14) v2cgybcuB296
Csa2G418900Melon (DHL92) v3.6.1cumedB088
Csa2G418900Melon (DHL92) v3.6.1cumedB097
Csa2G418900Melon (DHL92) v3.6.1cumedB148
Csa2G418900Silver-seed gourdcarcuB0025
Csa2G418900Silver-seed gourdcarcuB0361
Csa2G418900Silver-seed gourdcarcuB0889
Csa2G418900Watermelon (97103) v2cuwmbB097
Csa2G418900Watermelon (97103) v2cuwmbB119
Csa2G418900Watermelon (97103) v2cuwmbB124
Csa2G418900Wax gourdcuwgoB174
Csa2G418900Wax gourdcuwgoB151
Csa2G418900Wax gourdcuwgoB193
Csa2G418900Cucumber (Chinese Long) v2cucuB066
Csa2G418900Cucumber (Chinese Long) v2cucuB078
Csa2G418900Cucumber (Gy14) v1cgycuB020
Csa2G418900Cucumber (Gy14) v1cgycuB066
Csa2G418900Cucumber (Gy14) v1cgycuB213
Csa2G418900Cucurbita maxima (Rimu)cmacuB114
Csa2G418900Cucurbita maxima (Rimu)cmacuB505
Csa2G418900Cucurbita maxima (Rimu)cmacuB539
Csa2G418900Cucurbita maxima (Rimu)cmacuB589
Csa2G418900Cucurbita moschata (Rifu)cmocuB101
Csa2G418900Cucurbita moschata (Rifu)cmocuB493
Csa2G418900Cucurbita moschata (Rifu)cmocuB534
Csa2G418900Cucurbita moschata (Rifu)cmocuB578
Csa2G418900Cucurbita moschata (Rifu)cmocuB841
Csa2G418900Melon (DHL92) v3.5.1cumeB097
Csa2G418900Melon (DHL92) v3.5.1cumeB103
Csa2G418900Melon (DHL92) v3.5.1cumeB158
Csa2G418900Watermelon (Charleston Gray)cuwcgB110
Csa2G418900Watermelon (Charleston Gray)cuwcgB128
Csa2G418900Watermelon (97103) v1cuwmB134
Csa2G418900Watermelon (97103) v1cuwmB142
Csa2G418900Watermelon (97103) v1cuwmB145
Csa2G418900Cucurbita pepo (Zucchini)cpecuB233
Csa2G418900Cucurbita pepo (Zucchini)cpecuB663
Csa2G418900Cucurbita pepo (Zucchini)cpecuB705
Csa2G418900Bottle gourd (USVL1VR-Ls)culsiB094
Csa2G418900Bottle gourd (USVL1VR-Ls)culsiB099
Csa2G418900Bottle gourd (USVL1VR-Ls)culsiB112