Csa2G401280 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa2G401280
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr2 : 20421742 .. 20422106 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCCGAATCCAAAACTCAGCTGGATCCTCCGATAACCCAGATACAGAACCACATAACGTAACAAATAAGAAAAGCAGACACAGAAGGCACCCAATTGAAGTACCACACACGCCTTCCTGCAGAGAAATTTGGAATTGCGAAACGGAGCTTGCCTGGTGCGTGTGGTTTAAGAACTTCGCTTCATCAAACAGAATGTAGAAAGGAGACGACGTCTAGTTCCAGATGGGTCCTGGCAAATACGTGAATCAATAGCCATTAAGAAGATCATTGCCCCTGCATGTTCAATCGATCCAGAAGAATCGTGGAAGAGCTTCGATGGGAAGAAGTGTGGCGGTGACTTCTGGTACGGTGACTGGCGGTGA

mRNA sequence

ATGACCCGAATCCAAAACTCAGCTGGATCCTCCGATAACCCAGATACAGAACCACATAACGTAACAAATAAGAAAAGCAGACACAGAAGGCACCCAATTGAAAATGTAGAAAGGAGACGACGTCTAGTTCCAGATGGGTCCTGGCAAATACGTGAATCAATAGCCATTAAGAAGATCATTGCCCCTGCATGTTCAATCGATCCAGAAGAATCGTGGAAGAGCTTCGATGGGAAGAAGTGTGGCGGTGACTTCTGGTACGGTGACTGGCGGTGA

Coding sequence (CDS)

ATGACCCGAATCCAAAACTCAGCTGGATCCTCCGATAACCCAGATACAGAACCACATAACGTAACAAATAAGAAAAGCAGACACAGAAGGCACCCAATTGAAAATGTAGAAAGGAGACGACGTCTAGTTCCAGATGGGTCCTGGCAAATACGTGAATCAATAGCCATTAAGAAGATCATTGCCCCTGCATGTTCAATCGATCCAGAAGAATCGTGGAAGAGCTTCGATGGGAAGAAGTGTGGCGGTGACTTCTGGTACGGTGACTGGCGGTGA

Protein sequence

MTRIQNSAGSSDNPDTEPHNVTNKKSRHRRHPIENVERRRRLVPDGSWQIRESIAIKKIIAPACSIDPEESWKSFDGKKCGGDFWYGDWR*
Homology
[Close]
BLAST of Csa2G401280 vs. TrEMBL
Match: A0A0A0LMP5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G401280 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 8.6e-48
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1 

Query: 1  MTRIQNSAGSSDNPDTEPHNVTNKKSRHRRHPIENVERRRRLVPDGSWQIRESIAIKKII 60
          MTRIQNSAGSSDNPDTEPHNVTNKKSRHRRHPIENVERRRRLVPDGSWQIRESIAIKKII
Sbjct: 1  MTRIQNSAGSSDNPDTEPHNVTNKKSRHRRHPIENVERRRRLVPDGSWQIRESIAIKKII 60

Query: 61 APACSIDPEESWKSFDGKKCGGDFWYGDWR 91
          APACSIDPEESWKSFDGKKCGGDFWYGDWR
Sbjct: 61 APACSIDPEESWKSFDGKKCGGDFWYGDWR 90

[Close]
BLAST of Csa2G401280 vs. NCBI nr
Match: gi|700207949|gb|KGN63068.1| (hypothetical protein Csa_2G401280 [Cucumis sativus])

HSP 1 Score: 197.2 bits (500), Expect = 1.2e-47
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1 

Query: 1  MTRIQNSAGSSDNPDTEPHNVTNKKSRHRRHPIENVERRRRLVPDGSWQIRESIAIKKII 60
          MTRIQNSAGSSDNPDTEPHNVTNKKSRHRRHPIENVERRRRLVPDGSWQIRESIAIKKII
Sbjct: 1  MTRIQNSAGSSDNPDTEPHNVTNKKSRHRRHPIENVERRRRLVPDGSWQIRESIAIKKII 60

Query: 61 APACSIDPEESWKSFDGKKCGGDFWYGDWR 91
          APACSIDPEESWKSFDGKKCGGDFWYGDWR
Sbjct: 61 APACSIDPEESWKSFDGKKCGGDFWYGDWR 90

The following BLAST results are available for this feature:
BLAST of Csa2G401280 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LMP5_CUCSA8.6e-48100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G401280 PE=4 SV=1[more]
BLAST of Csa2G401280 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700207949|gb|KGN63068.1|1.2e-47100.00hypothetical protein Csa_2G401280 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa2G401280.1Csa2G401280.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa2G401280CSPI02G24640Wild cucumber (PI 183967)cpicuB065
Csa2G401280CsGy2G024400Cucumber (Gy14) v2cgybcuB057
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa2G401280Watermelon (Charleston Gray)cuwcgB097
Csa2G401280Watermelon (97103) v1cuwmB159
Csa2G401280Cucurbita pepo (Zucchini)cpecuB167
Csa2G401280Cucurbita pepo (Zucchini)cpecuB386
Csa2G401280Cucurbita pepo (Zucchini)cpecuB775
Csa2G401280Bottle gourd (USVL1VR-Ls)culsiB115
Csa2G401280Melon (DHL92) v3.6.1cumedB112
Csa2G401280Silver-seed gourdcarcuB0018
Csa2G401280Silver-seed gourdcarcuB0747
Csa2G401280Watermelon (97103) v2cuwmbB104
Csa2G401280Watermelon (97103) v2cuwmbB112
Csa2G401280Wax gourdcuwgoB164
Csa2G401280Cucumber (Gy14) v1cgycuB090
Csa2G401280Cucurbita maxima (Rimu)cmacuB277
Csa2G401280Cucurbita maxima (Rimu)cmacuB694
Csa2G401280Cucurbita moschata (Rifu)cmocuB264
Csa2G401280Cucurbita moschata (Rifu)cmocuB684
Csa2G401280Melon (DHL92) v3.5.1cumeB115