CSPI02G24640 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI02G24640
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr2 : 21158393 .. 21158757 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCCGAATCCAAAACTCAGCTGGATCCTCCGATAACCCAGATACAGAACCACATAACGTAACAAATAAGAAAAGCAGACACAGAAGGCACCCAATTGAAGTACCACACACGCCTTCCTGCAGAGAAATTTGGAATTGCGAAACGGAGCTTGCCTGGTGCGTGTGGTTTAAGAACTTCGCTTCATCAAACAGAATGTAGAAAGGAGACGACGTCTAGTTCCAGATGGGTCCTGGCAAATACGTGAATCAATAGCCATTAAGAAGATCATTGCCCCTGCATGTTCAATCGATCCAGAAGAATCGCGGAAGAGCTTCGATGGGAAGAAGTGTGGCGGTGACTTCTGGTACGGTGACTGGCGGTGA

mRNA sequence

ATGACCCGAATCCAAAACTCAGCTGGATCCTCCGATAACCCAGATACAGAACCACATAACGTAACAAATAAGAAAAGCAGACACAGAAGGCACCCAATTGAAAATGTAGAAAGGAGACGACGTCTAGTTCCAGATGGGTCCTGGCAAATACGTGAATCAATAGCCATTAAGAAGATCATTGCCCCTGCATGTTCAATCGATCCAGAAGAATCGCGGAAGAGCTTCGATGGGAAGAAGTGTGGCGGTGACTTCTGGTACGGTGACTGGCGGTGA

Coding sequence (CDS)

ATGACCCGAATCCAAAACTCAGCTGGATCCTCCGATAACCCAGATACAGAACCACATAACGTAACAAATAAGAAAAGCAGACACAGAAGGCACCCAATTGAAAATGTAGAAAGGAGACGACGTCTAGTTCCAGATGGGTCCTGGCAAATACGTGAATCAATAGCCATTAAGAAGATCATTGCCCCTGCATGTTCAATCGATCCAGAAGAATCGCGGAAGAGCTTCGATGGGAAGAAGTGTGGCGGTGACTTCTGGTACGGTGACTGGCGGTGA
Homology
[Close]
BLAST of CSPI02G24640 vs. TrEMBL
Match: A0A0A0LMP5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G401280 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 8.9e-45
Identity = 89/90 (98.89%), Postives = 89/90 (98.89%), Query Frame = 1 

Query: 1  MTRIQNSAGSSDNPDTEPHNVTNKKSRHRRHPIENVERRRRLVPDGSWQIRESIAIKKII 60
          MTRIQNSAGSSDNPDTEPHNVTNKKSRHRRHPIENVERRRRLVPDGSWQIRESIAIKKII
Sbjct: 1  MTRIQNSAGSSDNPDTEPHNVTNKKSRHRRHPIENVERRRRLVPDGSWQIRESIAIKKII 60

Query: 61 APACSIDPEESRKSFDGKKCGGDFWYGDWR 91
          APACSIDPEES KSFDGKKCGGDFWYGDWR
Sbjct: 61 APACSIDPEESWKSFDGKKCGGDFWYGDWR 90

[Close]
BLAST of CSPI02G24640 vs. NCBI nr
Match: gi|700207949|gb|KGN63068.1| (hypothetical protein Csa_2G401280 [Cucumis sativus])

HSP 1 Score: 187.2 bits (474), Expect = 1.3e-44
Identity = 89/90 (98.89%), Postives = 89/90 (98.89%), Query Frame = 1 

Query: 1  MTRIQNSAGSSDNPDTEPHNVTNKKSRHRRHPIENVERRRRLVPDGSWQIRESIAIKKII 60
          MTRIQNSAGSSDNPDTEPHNVTNKKSRHRRHPIENVERRRRLVPDGSWQIRESIAIKKII
Sbjct: 1  MTRIQNSAGSSDNPDTEPHNVTNKKSRHRRHPIENVERRRRLVPDGSWQIRESIAIKKII 60

Query: 61 APACSIDPEESRKSFDGKKCGGDFWYGDWR 91
          APACSIDPEES KSFDGKKCGGDFWYGDWR
Sbjct: 61 APACSIDPEESWKSFDGKKCGGDFWYGDWR 90

The following BLAST results are available for this feature:
BLAST of CSPI02G24640 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI02G24640 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LMP5_CUCSA8.9e-4598.89Uncharacterized protein OS=Cucumis sativus GN=Csa_2G401280 PE=4 SV=1[more]
BLAST of CSPI02G24640 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI02G24640 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700207949|gb|KGN63068.1|1.3e-4498.89hypothetical protein Csa_2G401280 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI02G24640.1CSPI02G24640.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 89..90
scor