Csa2G382600 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa2G382600
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr2 : 19795927 .. 19796112 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGAACGACGTCGTATAAGGGAAAACGACATGGTTTGGGAGGTGTGTGTGAATCCATTCATCATCGTCATGTTGGTGATGATACCGGGATGAAGCAAAATTTAGGGCGGGTCGAAGCGGAGCTCTCATCCCCATTTGTTTGTGTGCTCCATTGCCTCTCCGTCCAACACTTCTCTGCCTTTTAA

mRNA sequence

ATGCGAACGACGTCGTATAAGGGAAAACGACATGGTTTGGGAGGTGTGTGTGAATCCATTCATCATCGTCATGTTGGTGATGATACCGGGATGAAGCAAAATTTAGGGCGGGTCGAAGCGGAGCTCTCATCCCCATTTGTTTGTGTGCTCCATTGCCTCTCCGTCCAACACTTCTCTGCCTTTTAA

Coding sequence (CDS)

ATGCGAACGACGTCGTATAAGGGAAAACGACATGGTTTGGGAGGTGTGTGTGAATCCATTCATCATCGTCATGTTGGTGATGATACCGGGATGAAGCAAAATTTAGGGCGGGTCGAAGCGGAGCTCTCATCCCCATTTGTTTGTGTGCTCCATTGCCTCTCCGTCCAACACTTCTCTGCCTTTTAA

Protein sequence

MRTTSYKGKRHGLGGVCESIHHRHVGDDTGMKQNLGRVEAELSSPFVCVLHCLSVQHFSAF*
Homology
[Close]
BLAST of Csa2G382600 vs. TrEMBL
Match: A0A0A0LQD9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G382600 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.8e-28
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1 

Query: 1  MRTTSYKGKRHGLGGVCESIHHRHVGDDTGMKQNLGRVEAELSSPFVCVLHCLSVQHFSA 60
          MRTTSYKGKRHGLGGVCESIHHRHVGDDTGMKQNLGRVEAELSSPFVCVLHCLSVQHFSA
Sbjct: 1  MRTTSYKGKRHGLGGVCESIHHRHVGDDTGMKQNLGRVEAELSSPFVCVLHCLSVQHFSA 60

Query: 61 F 62
          F
Sbjct: 61 F 61

[Close]
BLAST of Csa2G382600 vs. NCBI nr
Match: gi|700207868|gb|KGN62987.1| (hypothetical protein Csa_2G382600 [Cucumis sativus])

HSP 1 Score: 132.5 bits (332), Expect = 2.5e-28
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1 

Query: 1  MRTTSYKGKRHGLGGVCESIHHRHVGDDTGMKQNLGRVEAELSSPFVCVLHCLSVQHFSA 60
          MRTTSYKGKRHGLGGVCESIHHRHVGDDTGMKQNLGRVEAELSSPFVCVLHCLSVQHFSA
Sbjct: 1  MRTTSYKGKRHGLGGVCESIHHRHVGDDTGMKQNLGRVEAELSSPFVCVLHCLSVQHFSA 60

Query: 61 F 62
          F
Sbjct: 61 F 61

The following BLAST results are available for this feature:
BLAST of Csa2G382600 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LQD9_CUCSA1.8e-28100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G382600 PE=4 SV=1[more]
BLAST of Csa2G382600 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700207868|gb|KGN62987.1|2.5e-28100.00hypothetical protein Csa_2G382600 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
molecular_function GO:0003676 nucleic acid binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU096941cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa2G382600.1Csa2G382600.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU096941CU096941transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa2G382600CsGy2G023620Cucumber (Gy14) v2cgybcuB057
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa2G382600Wax gourdcuwgoB156
Csa2G382600Wax gourdcuwgoB199
Csa2G382600Cucumber (Chinese Long) v2cucuB063
Csa2G382600Cucumber (Gy14) v1cgycuB233
Csa2G382600Cucumber (Gy14) v1cgycuB386
Csa2G382600Cucurbita maxima (Rimu)cmacuB013
Csa2G382600Cucurbita maxima (Rimu)cmacuB164
Csa2G382600Cucurbita maxima (Rimu)cmacuB792
Csa2G382600Cucurbita moschata (Rifu)cmocuB004
Csa2G382600Cucurbita moschata (Rifu)cmocuB149
Csa2G382600Cucurbita moschata (Rifu)cmocuB785
Csa2G382600Melon (DHL92) v3.5.1cumeB117
Csa2G382600Melon (DHL92) v3.5.1cumeB150
Csa2G382600Watermelon (Charleston Gray)cuwcgB141
Csa2G382600Watermelon (Charleston Gray)cuwcgB165
Csa2G382600Watermelon (97103) v1cuwmB107
Csa2G382600Watermelon (97103) v1cuwmB127
Csa2G382600Cucurbita pepo (Zucchini)cpecuB105
Csa2G382600Cucurbita pepo (Zucchini)cpecuB541
Csa2G382600Cucurbita pepo (Zucchini)cpecuB772
Csa2G382600Cucurbita pepo (Zucchini)cpecuB810
Csa2G382600Bottle gourd (USVL1VR-Ls)culsiB122
Csa2G382600Bottle gourd (USVL1VR-Ls)culsiB140
Csa2G382600Cucumber (Gy14) v2cgybcuB161
Csa2G382600Cucumber (Gy14) v2cgybcuB303
Csa2G382600Melon (DHL92) v3.6.1cumedB114
Csa2G382600Melon (DHL92) v3.6.1cumedB142
Csa2G382600Silver-seed gourdcarcuB0150
Csa2G382600Silver-seed gourdcarcuB0654
Csa2G382600Silver-seed gourdcarcuB0987
Csa2G382600Watermelon (97103) v2cuwmbB136
Csa2G382600Watermelon (97103) v2cuwmbB159
Csa2G382600Watermelon (97103) v2cuwmbB170