Csa2G336070 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa2G336070
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	MADS-box transcription factor; contains IPR002100 (Transcription factor, MADS-box)
Location	Chr2 : 15077922 .. 15079134 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAGAGGAAAACTGAGCATGAAACTCATAAGTAATGAGAAATCTCGAAAGACTACTTTTCATAAGCGGAAAGCAAGTTTGTTGCGAAAAGCTTACGAGCTTTCCACATTGTGTGATGTTCGTGTTTGTGTGGTTGTTCATGGCCCTAACCAATCAAATGACCAATCTCCACTCCAACTTCACACATGGCCGCCCTCTGCTGATGAAGTCAATAACATGATTGCTTCTTACAAAACTAATTGTCTCTACAAACGTGTTCGCAAGTCATTCGGTCTTATCGATTTCTTCTCCGAAAGAAAGAAGAAGGTCGAAACTGATATGTCCAAGCTTCGTAAGGATGTTTCTGAAGAAAGGTAATTATAATTATAGTTAAATATGCATGTTTGGATTTACTATTTGTTTATAGTTTAACAATCTTTGTGTGAGTTAATTTGTTATTATATTATGAATGTTGATTAGGTTTCCAAGTTGGGATGAACGTCTAGATCATCTCTTAGAAGATCAATTACGAGTTTTAATGGTGGAATTGGATTCAAAGATCGAGATAGCGAAGAAAAGGATTGAGATAGCAACGGAGAATAATTATAATGTTGAGGAGGGGACGTCAGTGGAGAGTAGCGGCCAAACCCTAAATGCAAACATGAAGTGTAAACAAGTAATGGGATTTGATCATGAAGAGGAAAGTACTGATTATGGGATGTTTGGAATTAGGTCATCAATGGAGCAAACACAAGGCATAATGCCATTCCATCATCATCATCATCATCATCATCAACAACAACAACTTCAAACAATGGCACAAAGCTGTCTTCAAATGGATCATGAGATTGAGAATTTGTCTCCATTCCTATTTGGATCTAATGGGTCAGCACCACAATTTCAGTTAAGTTATGGAAGTAATACTAACAATTGTTTCCAAAACTACCCTCATAGTTTTTACAATGATCCAACAAATGGGATGATTATGGAGAACACACAAAGCTACTCATCAATGTGCCATTATGGAGTTCCATTTGGTGCACAATCAGTTGTTCCAATATCATATATGCAAATGCAACAACTCACTGCCGGCGCTGAGGATCAGATGATGATGGGTTATGCTTCAACCTCTCAAATGGCTTTGCCCAATACTGCTTCTTCTCAAGTGATCAATGATCCATTTGATTTCTACAATAGCTATGAGTATTTGATGAAGCCTAACAACTTCTAA

mRNA sequence

ATGGGGAGAGGAAAACTGAGCATGAAACTCATAAGTAATGAGAAATCTCGAAAGACTACTTTTCATAAGCGGAAAGCAAGTTTGTTGCGAAAAGCTTACGAGCTTTCCACATTGTGTGATGTTCGTGTTTGTGTGGTTGTTCATGGCCCTAACCAATCAAATGACCAATCTCCACTCCAACTTCACACATGGCCGCCCTCTGCTGATGAAGTCAATAACATGATTGCTTCTTACAAAACTAATTGTCTCTACAAACGTGTTCGCAAGTCATTCGGTCTTATCGATTTCTTCTCCGAAAGAAAGAAGAAGGTCGAAACTGATATGTCCAAGCTTCGTAAGGATGTTTCTGAAGAAAGGTTTCCAAGTTGGGATGAACGTCTAGATCATCTCTTAGAAGATCAATTACGAGTTTTAATGGTGGAATTGGATTCAAAGATCGAGATAGCGAAGAAAAGGATTGAGATAGCAACGGAGAATAATTATAATGTTGAGGAGGGGACGTCAGTGGAGAGTAGCGGCCAAACCCTAAATGCAAACATGAAGTGTAAACAAGTAATGGGATTTGATCATGAAGAGGAAAGTACTGATTATGGGATGTTTGGAATTAGGTCATCAATGGAGCAAACACAAGGCATAATGCCATTCCATCATCATCATCATCATCATCATCAACAACAACAACTTCAAACAATGGCACAAAGCTGTCTTCAAATGGATCATGAGATTGAGAATTTGTCTCCATTCCTATTTGGATCTAATGGGTCAGCACCACAATTTCAGTTAAGTTATGGAAGTAATACTAACAATTGTTTCCAAAACTACCCTCATAGTTTTTACAATGATCCAACAAATGGGATGATTATGGAGAACACACAAAGCTACTCATCAATGTGCCATTATGGAGTTCCATTTGGTGCACAATCAGTTGTTCCAATATCATATATGCAAATGCAACAACTCACTGCCGGCGCTGAGGATCAGATGATGATGGGTTATGCTTCAACCTCTCAAATGGCTTTGCCCAATACTGCTTCTTCTCAAGTGATCAATGATCCATTTGATTTCTACAATAGCTATGAGTATTTGATGAAGCCTAACAACTTCTAA

Coding sequence (CDS)

ATGGGGAGAGGAAAACTGAGCATGAAACTCATAAGTAATGAGAAATCTCGAAAGACTACTTTTCATAAGCGGAAAGCAAGTTTGTTGCGAAAAGCTTACGAGCTTTCCACATTGTGTGATGTTCGTGTTTGTGTGGTTGTTCATGGCCCTAACCAATCAAATGACCAATCTCCACTCCAACTTCACACATGGCCGCCCTCTGCTGATGAAGTCAATAACATGATTGCTTCTTACAAAACTAATTGTCTCTACAAACGTGTTCGCAAGTCATTCGGTCTTATCGATTTCTTCTCCGAAAGAAAGAAGAAGGTCGAAACTGATATGTCCAAGCTTCGTAAGGATGTTTCTGAAGAAAGGTTTCCAAGTTGGGATGAACGTCTAGATCATCTCTTAGAAGATCAATTACGAGTTTTAATGGTGGAATTGGATTCAAAGATCGAGATAGCGAAGAAAAGGATTGAGATAGCAACGGAGAATAATTATAATGTTGAGGAGGGGACGTCAGTGGAGAGTAGCGGCCAAACCCTAAATGCAAACATGAAGTGTAAACAAGTAATGGGATTTGATCATGAAGAGGAAAGTACTGATTATGGGATGTTTGGAATTAGGTCATCAATGGAGCAAACACAAGGCATAATGCCATTCCATCATCATCATCATCATCATCATCAACAACAACAACTTCAAACAATGGCACAAAGCTGTCTTCAAATGGATCATGAGATTGAGAATTTGTCTCCATTCCTATTTGGATCTAATGGGTCAGCACCACAATTTCAGTTAAGTTATGGAAGTAATACTAACAATTGTTTCCAAAACTACCCTCATAGTTTTTACAATGATCCAACAAATGGGATGATTATGGAGAACACACAAAGCTACTCATCAATGTGCCATTATGGAGTTCCATTTGGTGCACAATCAGTTGTTCCAATATCATATATGCAAATGCAACAACTCACTGCCGGCGCTGAGGATCAGATGATGATGGGTTATGCTTCAACCTCTCAAATGGCTTTGCCCAATACTGCTTCTTCTCAAGTGATCAATGATCCATTTGATTTCTACAATAGCTATGAGTATTTGATGAAGCCTAACAACTTCTAA

Protein sequence

MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVVVHGPNQSNDQSPLQLHTWPPSADEVNNMIASYKTNCLYKRVRKSFGLIDFFSERKKKVETDMSKLRKDVSEERFPSWDERLDHLLEDQLRVLMVELDSKIEIAKKRIEIATENNYNVEEGTSVESSGQTLNANMKCKQVMGFDHEEESTDYGMFGIRSSMEQTQGIMPFHHHHHHHHQQQQLQTMAQSCLQMDHEIENLSPFLFGSNGSAPQFQLSYGSNTNNCFQNYPHSFYNDPTNGMIMENTQSYSSMCHYGVPFGAQSVVPISYMQMQQLTAGAEDQMMMGYASTSQMALPNTASSQVINDPFDFYNSYEYLMKPNNF*

Homology

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BLAST of Csa2G336070 vs. Swiss-Prot
Match: AGL82_ARATH (Agamous-like MADS-box protein AGL82 OS=Arabidopsis thaliana GN=AGL82 PE=1 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.6e-16
Identity = 52/149 (34.90%), Postives = 79/149 (53.02%), Query Frame = 1


Query: 6   LSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVVVHGPNQSNDQSPLQLHTWP 65
           + ++ I+N+K+R TT+ KRKASL +KA E STLC V  C++V+GP ++ D    +   WP
Sbjct: 6   VDLQRIANDKTRITTYKKRKASLYKKAQEFSTLCGVETCLIVYGPTKATDVVISEPEIWP 65

Query: 66  PSADEVNNMIASYKTNCLYKRVRKSFGLIDFFSERKKKVETDMSKLRKDVSEERFPSWDE 125
               +V  +I  YK + +    RK   +  F ++  K  E    K  K   E ++ SW+E
Sbjct: 66  KDETKVRAIIRKYK-DTVSTSCRKETNVETFVNDVGKGNEVVTKKRVK--RENKYSSWEE 125

Query: 126 RLDHLLEDQLRVLMVELDSKIEIAKKRIE 155
           +LD    +QL  +   +DSK+  A  R E
Sbjct: 126 KLDKCSREQLHGIFCAVDSKLNEAVTRQE 151

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BLAST of Csa2G336070 vs. Swiss-Prot
Match: AGL80_ARATH (Agamous-like MADS-box protein AGL80 OS=Arabidopsis thaliana GN=AGL80 PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 8.9e-12
Identity = 51/187 (27.27%), Postives = 82/187 (43.85%), Query Frame = 1


Query: 1   MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVVVHGPNQSNDQSPLQ 60
           M R K+ +  ISN+ SRK TF KRK  L++K +ELSTLC +  C +++ P  +N +    
Sbjct: 1   MTRKKVKLAYISNDSSRKATFKKRKKGLMKKVHELSTLCGITACAIIYSPYDTNPE---- 60

Query: 61  LHTWPPSADEVNNMIASYKTNCLYKRVRKSFGLIDFFSERKKKVETDMSKLRKDVSEERF 120
              W PS   V  +++ ++T     + +K      F  +R  K    + + RKD  E   
Sbjct: 61  --VW-PSNSGVQRVVSEFRTLPEMDQHKKMVDQEGFLKQRIAKATETLRRQRKDSRELEM 120

Query: 121 PS-------WDERLDHLLEDQLRVLMVELDSKIEIAKKRIEIATENNYNVEEGTSVESSG 180
                     +  + HL    L  L   ++  ++   +RIEI   +   + E +SV  + 
Sbjct: 121 TEVMFQCLIGNMEMFHLNIVDLNDLGYMIEQYLKDVNRRIEILRNSGTEIGESSSVAVAA 180

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BLAST of Csa2G336070 vs. Swiss-Prot
Match: MADS1_PETHY (Floral homeotic protein PMADS 1 OS=Petunia hybrida GN=PMADS1 PE=2 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 5.8e-11
Identity = 57/231 (24.68%), Postives = 107/231 (46.32%), Query Frame = 1


Query: 1   MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVVVHGPNQSNDQSPLQ 60
           M RGK+ +K I N+ +R+ T+ KR+  L +KA EL+ LCD +V +++         S  +
Sbjct: 1   MARGKIQIKRIENQTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIM-------ISSTGK 60

Query: 61  LHTWPPSADEVNNMIASYKTNCLYKRVRKSFGLIDFFSERKKKVETDMSKLR---KDVSE 120
           LH +         +  S  T  L+   +K+ G +D ++   +K++  + KL+   +++ +
Sbjct: 61  LHEF---------ISPSITTKQLFDLYQKTVG-VDLWNSHYEKMQEQLRKLKEVNRNLRK 120

Query: 121 ERFPSWDERLDHLLEDQLRVLMVELDSKIEIAKKRIEIATENNYNV--EEGTSVESSGQT 180
           E      E L+ L  +QL  LM  +D+ +++ ++R      N      ++  +VE   + 
Sbjct: 121 EIRQRMGESLNDLNYEQLEELMENVDNSLKLIRERKYKVIGNQIETFKKKVRNVEEIHRN 180

Query: 181 LNANMKCKQVMGFDHEEESTDY-GMFGIRSSMEQTQG--IMPFHHHHHHHH 224
           L      +Q   +   E+  DY  + G  +   +     + P HH  +HHH
Sbjct: 181 LLLEFDARQEDPYGLVEQEGDYNSVLGFPNGGHRILALRLQPNHHQPNHHH 214

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BLAST of Csa2G336070 vs. Swiss-Prot
Match: AG103_ARATH (Agamous-like MADS-box protein AGL103 OS=Arabidopsis thaliana GN=AGL103 PE=1 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.9e-10
Identity = 44/135 (32.59%), Postives = 67/135 (49.63%), Query Frame = 1


Query: 16  SRKTTFHKRKASLLRKAYELSTLCDVRVCVVVHGPNQSNDQSPLQLHTWPPSADEVNNMI 75
           SR T+  KR+ ++ +KA ELS LCD+ VCV+ +G N        +L TWP   ++V  + 
Sbjct: 31  SRATSLIKRQQTVFKKAKELSILCDIDVCVICYGSNG-------ELKTWPEEREKVKAIA 90

Query: 76  ASYKTNCLYKRVRKSFGLIDFFSERKK----KVETDMSKLRKDVSEERFPSWDERLDHLL 135
             Y      KR + S  L +F  +  K    K E    K+R+ V + ++P WD R D+  
Sbjct: 91  RRYGELSETKRRKGSVDLHEFLEKMNKDDPEKEEKKKIKVRR-VPKVKYPVWDPRFDNYS 150

Query: 136 EDQLRVLMVELDSKI 147
            +QL  L+  L+  +
Sbjct: 151 VEQLMGLVQSLERNL 157

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BLAST of Csa2G336070 vs. Swiss-Prot
Match: FBP24_PETHY (MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24 PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 4.9e-10
Identity = 57/237 (24.05%), Postives = 101/237 (42.62%), Query Frame = 1


Query: 1   MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVVVHG----------- 60
           MGRGK+ +K I N+ SR+ TF KR+A LL+K +ELS LCD ++ +++             
Sbjct: 4   MGRGKIEVKRIENKTSRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSKGKLFEYCSQ 63

Query: 61  PNQSNDQSPLQLHTWPPSADEVNNMIASYKTNCLYKRVRKSFGLIDFFSERKKKVETDMS 120
           P+  +      L T   S    +N +  Y       ++R+    +    +R K  +  ++
Sbjct: 64  PHSMSQIISRYLQTTGASLPVEDNRVQLYDE---VAKMRRDTLNLQLSLQRYKGDDLSLA 123

Query: 121 KLRKDVSEERFPSWDERLDHLLEDQLRVLMVEL-DSKIEIAKKRIEIATENNYNVEEGTS 180
           +       E     +++L+H L +++R   +EL   ++E  KK  ++  + N+++ +   
Sbjct: 124 QY------EELNELEKQLEHAL-NKIRARKLELMQQQMENLKKTEKMLEKENHDMYQ--- 183

Query: 181 VESSGQTLNANMKCKQVMGFDHEEESTDYGMFGIRSSMEQTQGIMPFHHHHHHHHQQ 226
                  +N  M  ++    DHE+                        HHHHH HQQ
Sbjct: 184 -----WLMNNQMYKQESAAMDHED------------------------HHHHHEHQQ 198

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BLAST of Csa2G336070 vs. TrEMBL
Match: A0A0A0LME6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G336070 PE=4 SV=1)

HSP 1 Score: 757.7 bits (1955), Expect = 6.7e-216
Identity = 368/368 (100.00%), Postives = 368/368 (100.00%), Query Frame = 1


Query: 1   MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVVVHGPNQSNDQSPLQ 60
           MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVVVHGPNQSNDQSPLQ
Sbjct: 1   MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVVVHGPNQSNDQSPLQ 60

Query: 61  LHTWPPSADEVNNMIASYKTNCLYKRVRKSFGLIDFFSERKKKVETDMSKLRKDVSEERF 120
           LHTWPPSADEVNNMIASYKTNCLYKRVRKSFGLIDFFSERKKKVETDMSKLRKDVSEERF
Sbjct: 61  LHTWPPSADEVNNMIASYKTNCLYKRVRKSFGLIDFFSERKKKVETDMSKLRKDVSEERF 120

Query: 121 PSWDERLDHLLEDQLRVLMVELDSKIEIAKKRIEIATENNYNVEEGTSVESSGQTLNANM 180
           PSWDERLDHLLEDQLRVLMVELDSKIEIAKKRIEIATENNYNVEEGTSVESSGQTLNANM
Sbjct: 121 PSWDERLDHLLEDQLRVLMVELDSKIEIAKKRIEIATENNYNVEEGTSVESSGQTLNANM 180

Query: 181 KCKQVMGFDHEEESTDYGMFGIRSSMEQTQGIMPFHHHHHHHHQQQQLQTMAQSCLQMDH 240
           KCKQVMGFDHEEESTDYGMFGIRSSMEQTQGIMPFHHHHHHHHQQQQLQTMAQSCLQMDH
Sbjct: 181 KCKQVMGFDHEEESTDYGMFGIRSSMEQTQGIMPFHHHHHHHHQQQQLQTMAQSCLQMDH 240

Query: 241 EIENLSPFLFGSNGSAPQFQLSYGSNTNNCFQNYPHSFYNDPTNGMIMENTQSYSSMCHY 300
           EIENLSPFLFGSNGSAPQFQLSYGSNTNNCFQNYPHSFYNDPTNGMIMENTQSYSSMCHY
Sbjct: 241 EIENLSPFLFGSNGSAPQFQLSYGSNTNNCFQNYPHSFYNDPTNGMIMENTQSYSSMCHY 300

Query: 301 GVPFGAQSVVPISYMQMQQLTAGAEDQMMMGYASTSQMALPNTASSQVINDPFDFYNSYE 360
           GVPFGAQSVVPISYMQMQQLTAGAEDQMMMGYASTSQMALPNTASSQVINDPFDFYNSYE
Sbjct: 301 GVPFGAQSVVPISYMQMQQLTAGAEDQMMMGYASTSQMALPNTASSQVINDPFDFYNSYE 360

Query: 361 YLMKPNNF 369
           YLMKPNNF
Sbjct: 361 YLMKPNNF 368

[Close]

BLAST of Csa2G336070 vs. TrEMBL
Match: M5XI05_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa027181mg PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 6.8e-35
Identity = 69/153 (45.10%), Postives = 110/153 (71.90%), Query Frame = 1


Query: 1   MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVVVHGPNQSNDQSPLQ 60
           MGRG+L M+LI+NE++RKTTF KR+  +++KAYE STLC++ VC++++GP Q++   P +
Sbjct: 1   MGRGRLKMELIANERARKTTFQKRRKGMMKKAYEFSTLCELDVCMIIYGPKQTD--RPPE 60

Query: 61  LHTWPPSADEVNNMIASYKTNCLYKRVRKSFGLIDFFSERKKKVETDMSKLRKDVSEERF 120
           LHTWP + DEV+ +I  YK + + K  +K+F L D   +RK KV  D+ + RK++ E ++
Sbjct: 61  LHTWPENRDEVDRIINKYKASIMRKPAKKTFDLSDLLRDRKTKVHVDIYRARKEMYEAKY 120

Query: 121 PSWDERLDHLLEDQLRVLMVELDSKIEIAKKRI 154
           P+WDER++   E+QL  L+  LD+K+E  K+ +
Sbjct: 121 PTWDERIESFSENQLEALLNTLDTKLESGKRTL 151

[Close]

BLAST of Csa2G336070 vs. TrEMBL
Match: M5X3X5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021970mg PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 2.2e-33
Identity = 67/153 (43.79%), Postives = 109/153 (71.24%), Query Frame = 1


Query: 1   MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVVVHGPNQSNDQSPLQ 60
           MGRG+L M+LI+NE+SRKTTF KR   +++KAYE STLC+V VC++++GP  ++   P +
Sbjct: 1   MGRGRLKMELIANERSRKTTFQKRSKGMMKKAYEFSTLCEVDVCIIIYGPKLTD--RPPE 60

Query: 61  LHTWPPSADEVNNMIASYKTNCLYKRVRKSFGLIDFFSERKKKVETDMSKLRKDVSEERF 120
           L TWP ++++V+ +I  YK + + K  +K+F L D   +RK KV  D+ + RK++ E ++
Sbjct: 61  LQTWPQNSEQVDRIINKYKASTMSKPAKKTFDLSDLLMDRKNKVYADIYRARKEMYEAKY 120

Query: 121 PSWDERLDHLLEDQLRVLMVELDSKIEIAKKRI 154
           P+WDER++   E+QL  L+ +LD+K+E  K+ +
Sbjct: 121 PTWDERIESFSENQLEALLDKLDAKLESGKRTL 151

[Close]

BLAST of Csa2G336070 vs. TrEMBL
Match: B9GRC0_POPTR (MADS-box family protein OS=Populus trichocarpa GN=POPTR_0002s25700g PE=4 SV=2)

HSP 1 Score: 145.6 bits (366), Expect = 1.2e-31
Identity = 66/161 (40.99%), Postives = 110/161 (68.32%), Query Frame = 1


Query: 1   MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVVVHGPNQSNDQSPLQ 60
           MG+ ++ M+LI  EKSR  TF KRKA LL+KA E S LC V  CV++ GP + +D  P+ 
Sbjct: 1   MGQKRIKMELIRKEKSRMLTFRKRKAGLLKKASEFSILCGVDACVIIFGPKEKDDHQPVA 60

Query: 61  LHTWPPSADEVNNMIASYKTNCLYKRVRKSFGLIDFFSERKKKVETDMSKLRKDVSEERF 120
             TWPPS++EV  +I  YK +    + R+ + + D+F+++KK++++++++L K + + ++
Sbjct: 61  PETWPPSSEEVRCIINRYKGS---DQPRRCYQVSDYFADKKKQIDSELARLHKQIIKAKY 120

Query: 121 PSWDERLDHLLEDQLRVLMVELDSKIEIAKKRIEIATENNY 162
           P+WD+RL+ L  DQLRV++  LD+KI++A K++     N Y
Sbjct: 121 PAWDDRLNRLYADQLRVIVGHLDAKIDLADKKLGSFNVNQY 158

[Close]

BLAST of Csa2G336070 vs. TrEMBL
Match: B9I424_POPTR (MADS-box family protein OS=Populus trichocarpa GN=POPTR_0012s11170g PE=4 SV=2)

HSP 1 Score: 144.1 bits (362), Expect = 3.5e-31
Identity = 67/161 (41.61%), Postives = 108/161 (67.08%), Query Frame = 1


Query: 1   MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVVVHGPNQSNDQSPLQ 60
           MG+ ++ M+LI  EKSR  TF KRKA LL+KA E S LC V  CV++ GP Q +D  P+ 
Sbjct: 1   MGQKRIKMELIRKEKSRMLTFRKRKAGLLKKASEFSILCGVDACVIIFGPKQKDDHQPVA 60

Query: 61  LHTWPPSADEVNNMIASYKTNCLYKRVRKSFGLIDFFSERKKKVETDMSKLRKDVSEERF 120
             TWPP+++EV  +I  YK +    + R+ + + D+F ++KK++++ +++L K + + ++
Sbjct: 61  PETWPPNSEEVRCIINRYKGS---DQPRRCYQVSDYFVDKKKQIDSKLARLHKQIIKAKY 120

Query: 121 PSWDERLDHLLEDQLRVLMVELDSKIEIAKKRIEIATENNY 162
           P+WD+RL+ L  DQLRVL+  LD+KI++A K++     N Y
Sbjct: 121 PAWDDRLNSLYADQLRVLVGHLDAKIDLADKKLGSFNANQY 158

[Close]

BLAST of Csa2G336070 vs. TAIR10
Match: AT5G55690.1 (AT5G55690.1 MADS-box transcription factor family protein)

HSP 1 Score: 93.6 bits (231), Expect = 2.8e-19
Identity = 49/152 (32.24%), Postives = 82/152 (53.95%), Query Frame = 1


Query: 1   MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVVVHGPNQSNDQSPLQ 60
           MGR  + M  I+NEK+R TT+ KRKA L +KA E STLC V  CV+V+GP+++ D+  ++
Sbjct: 1   MGRKMVKMTRITNEKTRITTYKKRKACLYKKASEFSTLCGVDTCVIVYGPSRAGDEMVME 60

Query: 61  LHTWPPSADEVNNMIASYKTNCLYKRVRKSFGLIDFFSERKKKVETDMSKLRKDVSEERF 120
              WP    +V  ++  Y+ +       K++ + +   +   KVE       K     ++
Sbjct: 61  PELWPKDGSKVREILTKYR-DTASSSCTKTYTVQECLEKNNTKVE-------KPTIATKY 120

Query: 121 PSWDERLDHLLEDQLRVLMVELDSKIEIAKKR 153
           P+WD++LD    + L  + + +++KI+ A  R
Sbjct: 121 PTWDKKLDQCSLNDLYAVFMAVENKIQEATNR 144

[Close]

BLAST of Csa2G336070 vs. TAIR10
Match: AT5G58890.1 (AT5G58890.1 AGAMOUS-like 82)

HSP 1 Score: 88.6 bits (218), Expect = 8.8e-18
Identity = 52/149 (34.90%), Postives = 79/149 (53.02%), Query Frame = 1


Query: 6   LSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVVVHGPNQSNDQSPLQLHTWP 65
           + ++ I+N+K+R TT+ KRKASL +KA E STLC V  C++V+GP ++ D    +   WP
Sbjct: 6   VDLQRIANDKTRITTYKKRKASLYKKAQEFSTLCGVETCLIVYGPTKATDVVISEPEIWP 65

Query: 66  PSADEVNNMIASYKTNCLYKRVRKSFGLIDFFSERKKKVETDMSKLRKDVSEERFPSWDE 125
               +V  +I  YK + +    RK   +  F ++  K  E    K  K   E ++ SW+E
Sbjct: 66  KDETKVRAIIRKYK-DTVSTSCRKETNVETFVNDVGKGNEVVTKKRVK--RENKYSSWEE 125

Query: 126 RLDHLLEDQLRVLMVELDSKIEIAKKRIE 155
           +LD    +QL  +   +DSK+  A  R E
Sbjct: 126 KLDKCSREQLHGIFCAVDSKLNEAVTRQE 151

[Close]

BLAST of Csa2G336070 vs. TAIR10
Match: AT5G26630.1 (AT5G26630.1 MADS-box transcription factor family protein)

HSP 1 Score: 76.6 bits (187), Expect = 3.5e-14
Identity = 51/167 (30.54%), Postives = 77/167 (46.11%), Query Frame = 1


Query: 1   MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVVVHGPNQSNDQSPLQ 60
           M R K+ M  I NE +RK+TF KRK  LL+KA EL  LC V +  VV+ P + N +    
Sbjct: 1   MTRQKVKMTFIENETARKSTFKKRKKGLLKKAQELGILCGVPIFAVVNSPYELNPE---- 60

Query: 61  LHTWPPSADEVNNMIASYKTNCLYKRVRKSFGLIDFFSERKKKVETDMSKLRKDVSEERF 120
              W PS +  N +++ +KT  +  + +K      F  +R  K      KLRK+  E   
Sbjct: 61  --VW-PSREAANQVVSQWKTMSVMDKTKKMVNQETFLQQRITKATESWKKLRKENKELEM 120

Query: 121 P-------SWDERLDHLLEDQLRVLMVELDSKIEIAKKRIEIATENN 161
                   S    +  + + +LR     ++ +++   +RIEI   NN
Sbjct: 121 KNIMFDCLSGKTLVSSIEKTELRDFGYVIEQQLKDVNRRIEILKRNN 160

[Close]

BLAST of Csa2G336070 vs. TAIR10
Match: AT5G48670.1 (AT5G48670.1 AGAMOUS-like 80)

HSP 1 Score: 72.8 bits (177), Expect = 5.0e-13
Identity = 51/187 (27.27%), Postives = 82/187 (43.85%), Query Frame = 1


Query: 1   MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVVVHGPNQSNDQSPLQ 60
           M R K+ +  ISN+ SRK TF KRK  L++K +ELSTLC +  C +++ P  +N +    
Sbjct: 1   MTRKKVKLAYISNDSSRKATFKKRKKGLMKKVHELSTLCGITACAIIYSPYDTNPE---- 60

Query: 61  LHTWPPSADEVNNMIASYKTNCLYKRVRKSFGLIDFFSERKKKVETDMSKLRKDVSEERF 120
              W PS   V  +++ ++T     + +K      F  +R  K    + + RKD  E   
Sbjct: 61  --VW-PSNSGVQRVVSEFRTLPEMDQHKKMVDQEGFLKQRIAKATETLRRQRKDSRELEM 120

Query: 121 PS-------WDERLDHLLEDQLRVLMVELDSKIEIAKKRIEIATENNYNVEEGTSVESSG 180
                     +  + HL    L  L   ++  ++   +RIEI   +   + E +SV  + 
Sbjct: 121 TEVMFQCLIGNMEMFHLNIVDLNDLGYMIEQYLKDVNRRIEILRNSGTEIGESSSVAVAA 180

[Close]

BLAST of Csa2G336070 vs. TAIR10
Match: AT4G11250.1 (AT4G11250.1 AGAMOUS-like 52)

HSP 1 Score: 68.6 bits (166), Expect = 9.5e-12
Identity = 42/144 (29.17%), Postives = 65/144 (45.14%), Query Frame = 1


Query: 12  SNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVVVHGPNQSNDQSPLQLHTWPPSADEV 71
           S+     T+   R  ++ +KA ELS LC + VCV+ +GP+         L TWP   + V
Sbjct: 6   SSSSCNPTSLTNRLKTIFKKAEELSILCAIDVCVIYYGPDG-------DLRTWPKDRETV 65

Query: 72  NNMIASYKTNCLYKRVRKSFGLIDFFSERKKKVETDMSKLRKDVSEERFPSWDERLDHLL 131
            NM   YK +   ++ +K   L +F  + K K   D  K +   +  + P+W    DH  
Sbjct: 66  KNMALRYKED---RKRKKCLNLHEFLEKEKVK---DKDKYKGKTNYVKNPNWYPNFDHYS 125

Query: 132 EDQLRVLMVELDSKIEIAKKRIEI 156
             QL  L+  L+  +   +KR+ I
Sbjct: 126 PQQLSQLIQSLERTLSTLQKRLRI 136

[Close]

BLAST of Csa2G336070 vs. NCBI nr
Match: gi|778674258|ref|XP_011650173.1| (PREDICTED: floral homeotic protein DEFICIENS-like [Cucumis sativus])

HSP 1 Score: 757.7 bits (1955), Expect = 9.6e-216
Identity = 368/368 (100.00%), Postives = 368/368 (100.00%), Query Frame = 1


Query: 1   MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVVVHGPNQSNDQSPLQ 60
           MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVVVHGPNQSNDQSPLQ
Sbjct: 1   MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVVVHGPNQSNDQSPLQ 60

Query: 61  LHTWPPSADEVNNMIASYKTNCLYKRVRKSFGLIDFFSERKKKVETDMSKLRKDVSEERF 120
           LHTWPPSADEVNNMIASYKTNCLYKRVRKSFGLIDFFSERKKKVETDMSKLRKDVSEERF
Sbjct: 61  LHTWPPSADEVNNMIASYKTNCLYKRVRKSFGLIDFFSERKKKVETDMSKLRKDVSEERF 120

Query: 121 PSWDERLDHLLEDQLRVLMVELDSKIEIAKKRIEIATENNYNVEEGTSVESSGQTLNANM 180
           PSWDERLDHLLEDQLRVLMVELDSKIEIAKKRIEIATENNYNVEEGTSVESSGQTLNANM
Sbjct: 121 PSWDERLDHLLEDQLRVLMVELDSKIEIAKKRIEIATENNYNVEEGTSVESSGQTLNANM 180

Query: 181 KCKQVMGFDHEEESTDYGMFGIRSSMEQTQGIMPFHHHHHHHHQQQQLQTMAQSCLQMDH 240
           KCKQVMGFDHEEESTDYGMFGIRSSMEQTQGIMPFHHHHHHHHQQQQLQTMAQSCLQMDH
Sbjct: 181 KCKQVMGFDHEEESTDYGMFGIRSSMEQTQGIMPFHHHHHHHHQQQQLQTMAQSCLQMDH 240

Query: 241 EIENLSPFLFGSNGSAPQFQLSYGSNTNNCFQNYPHSFYNDPTNGMIMENTQSYSSMCHY 300
           EIENLSPFLFGSNGSAPQFQLSYGSNTNNCFQNYPHSFYNDPTNGMIMENTQSYSSMCHY
Sbjct: 241 EIENLSPFLFGSNGSAPQFQLSYGSNTNNCFQNYPHSFYNDPTNGMIMENTQSYSSMCHY 300

Query: 301 GVPFGAQSVVPISYMQMQQLTAGAEDQMMMGYASTSQMALPNTASSQVINDPFDFYNSYE 360
           GVPFGAQSVVPISYMQMQQLTAGAEDQMMMGYASTSQMALPNTASSQVINDPFDFYNSYE
Sbjct: 301 GVPFGAQSVVPISYMQMQQLTAGAEDQMMMGYASTSQMALPNTASSQVINDPFDFYNSYE 360

Query: 361 YLMKPNNF 369
           YLMKPNNF
Sbjct: 361 YLMKPNNF 368

[Close]

BLAST of Csa2G336070 vs. NCBI nr
Match: gi|659121915|ref|XP_008460878.1| (PREDICTED: MADS-box protein SOC1-like [Cucumis melo])

HSP 1 Score: 649.0 bits (1673), Expect = 4.8e-183
Identity = 330/371 (88.95%), Postives = 341/371 (91.91%), Query Frame = 1


Query: 1   MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVVVHGPNQSNDQSPLQ 60
           MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCV VHGPNQSNDQSPLQ
Sbjct: 1   MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVFVHGPNQSNDQSPLQ 60

Query: 61  LHTWPPSADEVNNMIASYKTNCLYKRVRKSFGLIDFFSERKKKVETDMSKLRKDVSEERF 120
           LHTWPP  DEVN+MIASYKTNCL+KR RK+FGLIDFFSERKKKVETDMSKLRKDV+E RF
Sbjct: 61  LHTWPPCPDEVNSMIASYKTNCLHKRARKAFGLIDFFSERKKKVETDMSKLRKDVAEARF 120

Query: 121 PSWDERLDHLLEDQLRVLMVELDSKIEIAKKRIEIATENNYNVEEGTSVESSGQTLNANM 180
             WDERLDHLLEDQLRVLM+ELDSKIEIAKKRIEI TE  YNVEEGTSVESS QTLNANM
Sbjct: 121 TKWDERLDHLLEDQLRVLMMELDSKIEIAKKRIEIETE-CYNVEEGTSVESS-QTLNANM 180

Query: 181 KCKQVMGFDHEEESTDYGMFGIRSSMEQTQGIMPFHHHHHHHHQQQQLQTMAQSCLQMDH 240
           K KQVMGFD EEEST+YGMFGIRSSMEQTQG MPFH  +HH   QQQLQTMAQSCLQMDH
Sbjct: 181 KHKQVMGFDPEEESTNYGMFGIRSSMEQTQGTMPFHQQYHH---QQQLQTMAQSCLQMDH 240

Query: 241 EIENLSPFLFGSNGSAPQFQLSYGS---NTNNCFQNYPHSFYNDPTNGMIMENTQSYSSM 300
           EIE LSPFLFGSNGSAPQFQLS GS   N NNCFQNYPHSFYNDPTNGMIMENTQSYSSM
Sbjct: 241 EIETLSPFLFGSNGSAPQFQLSCGSNNNNNNNCFQNYPHSFYNDPTNGMIMENTQSYSSM 300

Query: 301 CHYGVPFGAQSVVPISYMQMQQLTAGAEDQMMMGYASTSQMALPNTASSQVINDPFDFYN 360
           CHYGVPFG QSVVPISYMQMQQLT GA+DQMMMGYAS+SQM LPN+ASSQVIND FDFYN
Sbjct: 301 CHYGVPFGTQSVVPISYMQMQQLT-GADDQMMMGYASSSQMPLPNSASSQVINDQFDFYN 360

Query: 361 SYEYLMKPNNF 369
           SYEY MKPN+F
Sbjct: 361 SYEYFMKPNSF 365

[Close]

BLAST of Csa2G336070 vs. NCBI nr
Match: gi|645246354|ref|XP_008229316.1| (PREDICTED: MADS-box transcription factor 1-like [Prunus mume])

HSP 1 Score: 174.1 bits (440), Expect = 4.5e-40
Identity = 114/387 (29.46%), Postives = 192/387 (49.61%), Query Frame = 1


Query: 1   MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVVVHGPNQSNDQSPLQ 60
           MGRG+L M+LI+NE++RKTTF KR+  +++KAYE STLC++ VC++++GP Q++   P +
Sbjct: 1   MGRGRLKMELIANERARKTTFQKRRKGMMKKAYEFSTLCELDVCMIIYGPKQTD--RPPE 60

Query: 61  LHTWPPSADEVNNMIASYKTNCLYKRVRKSFGLIDFFSERKKKVETDMSKLRKDVSEERF 120
           L+TWP + DEV+ +I  YK + + K  +K+F L D   +RK KV  D+ + +K++ E ++
Sbjct: 61  LYTWPENRDEVDRIINKYKASIMRKPAKKTFDLSDLLRDRKTKVHVDIYRAQKEMYEAKY 120

Query: 121 PSWDERLDHLLEDQLRVLMVELDSKIEIAK-----KRIEIATENNYNVE----------- 180
           P+WDER++   E+QL  L+  LD+K+E  K     KR + A  + + +            
Sbjct: 121 PTWDERIESFSENQLEALLNTLDTKLESGKRTLLNKRKQSAECHQHQIHCMGKAAPTKIM 180

Query: 181 ---EGTSVESSGQTLNANMKCKQVM-GFDHEEESTDYGMFGIRSSMEQTQGIMPFHHHHH 240
                 +   +G++ +    C   M G  HEE+     M  + ++M     +  F HHHH
Sbjct: 181 LMGGNPNNNITGESSSQKQPCNYFMQGHVHEEDQKP--MRSLSNNMVDMHPVSSFDHHHH 240

Query: 241 HHHQQQQLQTMAQSCLQMDHEIENLSP----FLFGSNGSAPQFQLSYGSNTN----NCFQ 300
           H    Q LQ    +         N SP     L  SN +    Q S G++++    +  +
Sbjct: 241 HQSSDQMLQLDNSNEYLNSLMAHNSSPMAMWMLMESNYNYSTLQFSSGASSSAHSQSPLE 300

Query: 301 NYPHSFYNDPTNGMIMENTQSYSSMCHYGVPFGAQSVVPISYMQMQQLTAGAEDQMMMGY 360
            Y ++F NDP     ++N      M +  +   + S     Y ++ Q T           
Sbjct: 301 GYQNNF-NDPMMQSAVDNMNMNMMMLNGNINPPSSSSTSQYYARLMQPTVPYMQYYPPMP 360

[Close]

BLAST of Csa2G336070 vs. NCBI nr
Match: gi|595970108|ref|XP_007217491.1| (hypothetical protein PRUPE_ppa027181mg, partial [Prunus persica])

HSP 1 Score: 156.4 bits (394), Expect = 9.8e-35
Identity = 69/153 (45.10%), Postives = 110/153 (71.90%), Query Frame = 1


Query: 1   MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVVVHGPNQSNDQSPLQ 60
           MGRG+L M+LI+NE++RKTTF KR+  +++KAYE STLC++ VC++++GP Q++   P +
Sbjct: 1   MGRGRLKMELIANERARKTTFQKRRKGMMKKAYEFSTLCELDVCMIIYGPKQTD--RPPE 60

Query: 61  LHTWPPSADEVNNMIASYKTNCLYKRVRKSFGLIDFFSERKKKVETDMSKLRKDVSEERF 120
           LHTWP + DEV+ +I  YK + + K  +K+F L D   +RK KV  D+ + RK++ E ++
Sbjct: 61  LHTWPENRDEVDRIINKYKASIMRKPAKKTFDLSDLLRDRKTKVHVDIYRARKEMYEAKY 120

Query: 121 PSWDERLDHLLEDQLRVLMVELDSKIEIAKKRI 154
           P+WDER++   E+QL  L+  LD+K+E  K+ +
Sbjct: 121 PTWDERIESFSENQLEALLNTLDTKLESGKRTL 151

[Close]

BLAST of Csa2G336070 vs. NCBI nr
Match: gi|694327228|ref|XP_009354489.1| (PREDICTED: agamous-like MADS-box protein AGL80 [Pyrus x bretschneideri])

HSP 1 Score: 152.9 bits (385), Expect = 1.1e-33
Identity = 71/153 (46.41%), Postives = 110/153 (71.90%), Query Frame = 1


Query: 1   MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVVVHGPNQSNDQSPLQ 60
           MGRG+L+M+LI+NE++RKTTF KR   +L+KA E+STLCD+ VC++++GP QS  +SP +
Sbjct: 1   MGRGRLNMELITNERARKTTFQKRTKGILKKAGEISTLCDLDVCMIIYGPKQSG-RSP-E 60

Query: 61  LHTWPPSADEVNNMIASYKTNCLYKRVRKSFGLIDFFSERKKKVETDMSKLRKDVSEERF 120
           LHTWP +  EVN +I  YK +   K  +K+F L D   +RK KV  D  + RK++ E ++
Sbjct: 61  LHTWPRNPSEVNRIINKYKASTTCKPAKKTFNLSDLLMDRKTKVHVDTYRARKEMYEAKY 120

Query: 121 PSWDERLDHLLEDQLRVLMVELDSKIEIAKKRI 154
           P+WDER+++  E++L +L+  LD+K+E  K+ +
Sbjct: 121 PTWDERIENFSENELELLLNALDAKLEAGKRTL 151

The following BLAST results are available for this feature:

BLAST of Csa2G336070 vs. Swiss-Prot


Match Name	E-value	Identity	Description
AGL82_ARATH	1.6e-16	34.90	Agamous-like MADS-box protein AGL82 OS=Arabidopsis thaliana GN=AGL82 PE=1 SV=1	[more]
AGL80_ARATH	8.9e-12	27.27	Agamous-like MADS-box protein AGL80 OS=Arabidopsis thaliana GN=AGL80 PE=1 SV=1	[more]
MADS1_PETHY	5.8e-11	24.68	Floral homeotic protein PMADS 1 OS=Petunia hybrida GN=PMADS1 PE=2 SV=1	[more]
AG103_ARATH	2.9e-10	32.59	Agamous-like MADS-box protein AGL103 OS=Arabidopsis thaliana GN=AGL103 PE=1 SV=1	[more]
FBP24_PETHY	4.9e-10	24.05	MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24 PE=1 SV=1	[more]

BLAST of Csa2G336070 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LME6_CUCSA	6.7e-216	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G336070 PE=4 SV=1	[more]
M5XI05_PRUPE	6.8e-35	45.10	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa027181mg PE=4 S...	[more]
M5X3X5_PRUPE	2.2e-33	43.79	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021970mg PE=4 SV=1	[more]
B9GRC0_POPTR	1.2e-31	40.99	MADS-box family protein OS=Populus trichocarpa GN=POPTR_0002s25700g PE=4 SV=2	[more]
B9I424_POPTR	3.5e-31	41.61	MADS-box family protein OS=Populus trichocarpa GN=POPTR_0012s11170g PE=4 SV=2	[more]

BLAST of Csa2G336070 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G55690.1	2.8e-19	32.24	MADS-box transcription factor family protein	[more]
AT5G58890.1	8.8e-18	34.90	AGAMOUS-like 82	[more]
AT5G26630.1	3.5e-14	30.54	MADS-box transcription factor family protein	[more]
AT5G48670.1	5.0e-13	27.27	AGAMOUS-like 80	[more]
AT4G11250.1	9.5e-12	29.17	AGAMOUS-like 52	[more]

BLAST of Csa2G336070 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778674258\|ref\|XP_011650173.1\|	9.6e-216	100.00	PREDICTED: floral homeotic protein DEFICIENS-like [Cucumis sativus]	[more]
gi\|659121915\|ref\|XP_008460878.1\|	4.8e-183	88.95	PREDICTED: MADS-box protein SOC1-like [Cucumis melo]	[more]
gi\|645246354\|ref\|XP_008229316.1\|	4.5e-40	29.46	PREDICTED: MADS-box transcription factor 1-like [Prunus mume]	[more]
gi\|595970108\|ref\|XP_007217491.1\|	9.8e-35	45.10	hypothetical protein PRUPE_ppa027181mg, partial [Prunus persica]	[more]
gi\|694327228\|ref\|XP_009354489.1\|	1.1e-33	46.41	PREDICTED: agamous-like MADS-box protein AGL80 [Pyrus x bretschneideri]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002100	TF_MADSbox

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0046983	protein dimerization activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0045944	positive regulation of transcription from RNA polymerase II promoter
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000987	core promoter proximal region sequence-specific DNA binding
molecular_function	GO:0000982	transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa2G336070.1	Csa2G336070.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 3..23 score: 3.5E-11coord: 23..38 score: 3.5E-11coord: 38..59 score: 3.5
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 11..52 score: 3.5
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 1..60 score: 8.2
IPR002100	Transcription factor, MADS-box	PROFILE	PS50066	MADS_BOX_2	coord: 1..47 score: 19
IPR002100	Transcription factor, MADS-box	unknown	SSF55455	SRF-like	coord: 2..101 score: 8.37
None	No IPR available	unknown	Coil	Coil	coord: 139..159 score: -coord: 94..114 scor
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 2..178 score: 2.2E-48coord: 253..367 score: 2.2
None	No IPR available	PANTHER	PTHR11945:SF176	PROTEIN AGAMOUS-LIKE 82	coord: 2..178 score: 2.2E-48coord: 253..367 score: 2.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa2G336070	Cla007823	Watermelon (97103) v1	cuwmB144
Csa2G336070	MELO3C023227	Melon (DHL92) v3.5.1	cumeB101
Csa2G336070	ClCG02G000370	Watermelon (Charleston Gray)	cuwcgB126
Csa2G336070	Lsi10G007490	Bottle gourd (USVL1VR-Ls)	culsiB095
Csa2G336070	MELO3C023227.2	Melon (DHL92) v3.6.1	cumedB093
Csa2G336070	Cla97C02G026640	Watermelon (97103) v2	cuwmbB122
Csa2G336070	CSPI02G16140	Wild cucumber (PI 183967)	cpicuB065
Csa2G336070	Cucsa.228450	Cucumber (Gy14) v1	cgycuB324
Csa2G336070	CsGy2G015860	Cucumber (Gy14) v2	cgybcuB058

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa2G336070	Cucurbita moschata (Rifu)	cmocuB535
Csa2G336070	Cucurbita moschata (Rifu)	cmocuB575
Csa2G336070	Cucurbita pepo (Zucchini)	cpecuB271
Csa2G336070	Cucurbita pepo (Zucchini)	cpecuB714
Csa2G336070	Cucumber (Gy14) v2	cgybcuB063
Csa2G336070	Silver-seed gourd	carcuB0738
Csa2G336070	Silver-seed gourd	carcuB1071
Csa2G336070	Wax gourd	cuwgoB176
Csa2G336070	Cucurbita maxima (Rimu)	cmacuB545
Csa2G336070	Cucurbita maxima (Rimu)	cmacuB587