Csa2G252060 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa2G252060
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr2 : 12438289 .. 12438754 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGTTTCAGAGTTTTGTGCAAGTGGGGGCTTTAAAACCCGCCGAGGCCGAGGCCCCGGCTACCCCCCCAAAAGAAGCAGAAAGAGTAGCTATTTCCACCGCCAAATTTACCACGATCACCTATACACTTGCAATATCCCACCGCGATCCGGTCAGAAGAAGAATTTCACAAGAACGAAGAAACAAAAAATGAAATTAAAACAACACACCAATCAAAGCCTTAAACACCGAAACTGTTCTTCACCATGCAGATCTGGAAACGAATTCAAAGAACGGAATTAAGAATTTCGGTCCAAAAACAAAAAAAAAAAAGAAAAGAAAACAAAGAGGAATCGGGAATGAATGGAAAGGAGAATTATCCGGGCAAAAGAGGCGGAGAAAAAGAAGAAGGAAGAAACGGAAACCTAACGGAGAAAACGCGGAGAGAAATGTAGAGCCGTCGGAGACGACGGAATGCGTTTAA

mRNA sequence

ATGGAAGTTTCAGAGTTTTGTGCAAGTGGGGGCTTTAAAACCCGCCGAGGCCGAGGCCCCGGCTACCCCCCCAAAAGAAGCAGAAAGAGTAGCTATTTCCACCGCCAAATTTACCACGATCACCTATACACTTGCAATATCCCACCGCGATCCGATCTGGAAACGAATTCAAAGAACGGAATTAAGAATTTCGGTCCAAAAACAAAAAAAAAAAAGAAAAGAAAACAAAGAGGAATCGGGAATGAATGGAAAGGAGAATTATCCGGGCAAAAGAGGCGGAGAAAAAGAAGAAGGAAGAAACGGAAACCTAACGGAGAAAACGCGGAGAGAAATGTAGAGCCGTCGGAGACGACGGAATGCGTTTAA

Coding sequence (CDS)

ATGGAAGTTTCAGAGTTTTGTGCAAGTGGGGGCTTTAAAACCCGCCGAGGCCGAGGCCCCGGCTACCCCCCCAAAAGAAGCAGAAAGAGTAGCTATTTCCACCGCCAAATTTACCACGATCACCTATACACTTGCAATATCCCACCGCGATCCGATCTGGAAACGAATTCAAAGAACGGAATTAAGAATTTCGGTCCAAAAACAAAAAAAAAAAAGAAAAGAAAACAAAGAGGAATCGGGAATGAATGGAAAGGAGAATTATCCGGGCAAAAGAGGCGGAGAAAAAGAAGAAGGAAGAAACGGAAACCTAACGGAGAAAACGCGGAGAGAAATGTAGAGCCGTCGGAGACGACGGAATGCGTTTAA

Protein sequence

MEVSEFCASGGFKTRRGRGPGYPPKRSRKSSYFHRQIYHDHLYTCNIPPRSDLETNSKNGIKNFGPKTKKKKKRKQRGIGNEWKGELSGQKRRRKRRRKKRKPNGENAERNVEPSETTECV*

Homology

[Close]

BLAST of Csa2G252060 vs. TrEMBL
Match: A0A0A0LM42_CUCSA (Dynein heavy chain OS=Cucumis sativus GN=Csa_2G252060 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 2.5e-66
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 1


Query: 1   MEVSEFCASGGFKTRRGRGPGYPPKRSRKSSYFHRQIYHDHLYTCNIPPRSDLETNSKNG 60
           MEVSEFCASGGFKTRRGRGPGYPPKRSRKSSYFHRQIYHDHLYTCNIPPRSDLETNSKNG
Sbjct: 1   MEVSEFCASGGFKTRRGRGPGYPPKRSRKSSYFHRQIYHDHLYTCNIPPRSDLETNSKNG 60

Query: 61  IKNFGPKTKKKKKRKQRGIGNEWKGELSGQKRRRKRRRKKRKPNGENAERNVEPSETTEC 120
           IKNFGPKTKKKKKRKQRGIGNEWKGELSGQKRRRKRRRKKRKPNGENAERNVEPSETTEC
Sbjct: 61  IKNFGPKTKKKKKRKQRGIGNEWKGELSGQKRRRKRRRKKRKPNGENAERNVEPSETTEC 120

Query: 121 V 122
           V
Sbjct: 121 V 121

[Close]

BLAST of Csa2G252060 vs. NCBI nr
Match: gi|700206738|gb|KGN61857.1| (Dynein heavy chain [Cucumis sativus])

HSP 1 Score: 259.2 bits (661), Expect = 3.5e-66
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 1


Query: 1   MEVSEFCASGGFKTRRGRGPGYPPKRSRKSSYFHRQIYHDHLYTCNIPPRSDLETNSKNG 60
           MEVSEFCASGGFKTRRGRGPGYPPKRSRKSSYFHRQIYHDHLYTCNIPPRSDLETNSKNG
Sbjct: 1   MEVSEFCASGGFKTRRGRGPGYPPKRSRKSSYFHRQIYHDHLYTCNIPPRSDLETNSKNG 60

Query: 61  IKNFGPKTKKKKKRKQRGIGNEWKGELSGQKRRRKRRRKKRKPNGENAERNVEPSETTEC 120
           IKNFGPKTKKKKKRKQRGIGNEWKGELSGQKRRRKRRRKKRKPNGENAERNVEPSETTEC
Sbjct: 61  IKNFGPKTKKKKKRKQRGIGNEWKGELSGQKRRRKRRRKKRKPNGENAERNVEPSETTEC 120

Query: 121 V 122
           V
Sbjct: 121 V 121

The following BLAST results are available for this feature:

BLAST of Csa2G252060 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LM42_CUCSA	2.5e-66	100.00	Dynein heavy chain OS=Cucumis sativus GN=Csa_2G252060 PE=4 SV=1	[more]

BLAST of Csa2G252060 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700206738\|gb\|KGN61857.1\|	3.5e-66	100.00	Dynein heavy chain [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006527	arginine catabolic process
biological_process	GO:0008295	spermidine biosynthetic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0008792	arginine decarboxylase activity
molecular_function	GO:0003824	catalytic activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU093472	cucumber EST collection version 3.0	transcribed_cluster
CU097607	cucumber EST collection version 3.0	transcribed_cluster
CU175748	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa2G252060.1	Csa2G252060.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU093472	CU093472	transcribed_cluster
CU097607	CU097607	transcribed_cluster
CU175748	CU175748	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa2G252060	Cucurbita pepo (Zucchini)	cpecuB232
Csa2G252060	Cucurbita pepo (Zucchini)	cpecuB267
Csa2G252060	Cucurbita pepo (Zucchini)	cpecuB540
Csa2G252060	Cucurbita pepo (Zucchini)	cpecuB704
Csa2G252060	Bottle gourd (USVL1VR-Ls)	culsiB093
Csa2G252060	Bottle gourd (USVL1VR-Ls)	culsiB103
Csa2G252060	Cucumber (Gy14) v2	cgybcuB056
Csa2G252060	Cucumber (Gy14) v2	cgybcuB295
Csa2G252060	Melon (DHL92) v3.6.1	cumedB081
Csa2G252060	Melon (DHL92) v3.6.1	cumedB096
Csa2G252060	Silver-seed gourd	carcuB0341
Csa2G252060	Silver-seed gourd	carcuB0463
Csa2G252060	Silver-seed gourd	carcuB0838
Csa2G252060	Watermelon (97103) v2	cuwmbB110
Csa2G252060	Watermelon (97103) v2	cuwmbB123
Csa2G252060	Wax gourd	cuwgoB154
Csa2G252060	Wax gourd	cuwgoB182
Csa2G252060	Cucumber (Chinese Long) v2	cucuB077
Csa2G252060	Cucumber (Gy14) v1	cgycuB133
Csa2G252060	Cucurbita maxima (Rimu)	cmacuB438
Csa2G252060	Cucurbita maxima (Rimu)	cmacuB542
Csa2G252060	Cucurbita maxima (Rimu)	cmacuB588
Csa2G252060	Cucurbita moschata (Rifu)	cmocuB426
Csa2G252060	Cucurbita moschata (Rifu)	cmocuB495
Csa2G252060	Cucurbita moschata (Rifu)	cmocuB531
Csa2G252060	Cucurbita moschata (Rifu)	cmocuB577
Csa2G252060	Melon (DHL92) v3.5.1	cumeB092
Csa2G252060	Melon (DHL92) v3.5.1	cumeB102
Csa2G252060	Watermelon (Charleston Gray)	cuwcgB104
Csa2G252060	Watermelon (Charleston Gray)	cuwcgB127
Csa2G252060	Watermelon (97103) v1	cuwmB149
Csa2G252060	Watermelon (97103) v1	cuwmB155