Csa2G153080 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa2G153080
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr2 : 9100631 .. 9100870 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACATGATTGTTTTGTTTGACGATCTATGGTTGTCAGATGGACGGATTTGCACTCGCTTTGGTGATAGGATAGTGTGGAAAGCTGCGAGTGGGGGATTCTCGCTTGTTGAATTTTTTGGAGGTTGCGTCTTGGTGTTGGCCTCGTGGTTCTTCACCGTTGATGGACTGGGAGTCCCTGTGTGTGGTAGGTGGATAGGTGGATTTGAGTGTCGTCGTGTCGATAGGTGTTGTCTGTGA

mRNA sequence

ATGGACATGATTGTTTTGTTTGACGATCTATGGTTGTCAGATGGACGGATTTGCACTCGCTTTGGTGATAGGATAGTGTGGAAAGCTGCGAGTGGGGGATTCTCGCTTGTTGAATTTTTTGGAGGTTGCGTCTTGGTGTTGGCCTCGTGGTTCTTCACCGTTGATGGACTGGGAGTCCCTGTGTGTGGTAGGTGGATAGGTGGATTTGAGTGTCGTCGTGTCGATAGGTGTTGTCTGTGA

Coding sequence (CDS)

ATGGACATGATTGTTTTGTTTGACGATCTATGGTTGTCAGATGGACGGATTTGCACTCGCTTTGGTGATAGGATAGTGTGGAAAGCTGCGAGTGGGGGATTCTCGCTTGTTGAATTTTTTGGAGGTTGCGTCTTGGTGTTGGCCTCGTGGTTCTTCACCGTTGATGGACTGGGAGTCCCTGTGTGTGGTAGGTGGATAGGTGGATTTGAGTGTCGTCGTGTCGATAGGTGTTGTCTGTGA

Protein sequence

MDMIVLFDDLWLSDGRICTRFGDRIVWKAASGGFSLVEFFGGCVLVLASWFFTVDGLGVPVCGRWIGGFECRRVDRCCL*

Homology

[Close]

BLAST of Csa2G153080 vs. TrEMBL
Match: A0A0A0LKH2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G153080 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 3.1e-41
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1


Query: 1  MDMIVLFDDLWLSDGRICTRFGDRIVWKAASGGFSLVEFFGGCVLVLASWFFTVDGLGVP 60
          MDMIVLFDDLWLSDGRICTRFGDRIVWKAASGGFSLVEFFGGCVLVLASWFFTVDGLGVP
Sbjct: 1  MDMIVLFDDLWLSDGRICTRFGDRIVWKAASGGFSLVEFFGGCVLVLASWFFTVDGLGVP 60

Query: 61 VCGRWIGGFECRRVDRCCL 80
          VCGRWIGGFECRRVDRCCL
Sbjct: 61 VCGRWIGGFECRRVDRCCL 79

[Close]

BLAST of Csa2G153080 vs. NCBI nr
Match: gi|700206400|gb|KGN61519.1| (hypothetical protein Csa_2G153080 [Cucumis sativus])

HSP 1 Score: 175.3 bits (443), Expect = 4.4e-41
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1


Query: 1  MDMIVLFDDLWLSDGRICTRFGDRIVWKAASGGFSLVEFFGGCVLVLASWFFTVDGLGVP 60
          MDMIVLFDDLWLSDGRICTRFGDRIVWKAASGGFSLVEFFGGCVLVLASWFFTVDGLGVP
Sbjct: 1  MDMIVLFDDLWLSDGRICTRFGDRIVWKAASGGFSLVEFFGGCVLVLASWFFTVDGLGVP 60

Query: 61 VCGRWIGGFECRRVDRCCL 80
          VCGRWIGGFECRRVDRCCL
Sbjct: 61 VCGRWIGGFECRRVDRCCL 79

The following BLAST results are available for this feature:

BLAST of Csa2G153080 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LKH2_CUCSA	3.1e-41	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G153080 PE=4 SV=1	[more]

BLAST of Csa2G153080 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700206400\|gb\|KGN61519.1\|	4.4e-41	100.00	hypothetical protein Csa_2G153080 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa2G153080.1	Csa2G153080.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa2G153080	CsGy2G009710	Cucumber (Gy14) v2	cgybcuB056

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa2G153080	Cucumber (Gy14) v1	cgycuB296
Csa2G153080	Melon (DHL92) v3.5.1	cumeB134
Csa2G153080	Watermelon (Charleston Gray)	cuwcgB158
Csa2G153080	Melon (DHL92) v3.6.1	cumedB127