Csa2G091800 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa2G091800
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr2 : 6968886 .. 6969830 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATCGGAGGATGAGCTCGACATGCACGATGCTCATGACGACGACGATGACTCTGTTGACAATGAGGAGGATTTCTACAGTGGCGGCGACGACGATGCTGCTGGAATTGATAGCGACGATGCTGATGTCGGTGATTATGAGTTTGTTGATAATGATTCCGATGATTCCGACGACATGGTCTCCTATCGCCACCAGGTTCTTATTGTTCCATCTTTATTTTTTATTTTCTGTGTGTTCGCCATGGGCATTCAAACTTTGTGGTTTTGCGAATGCTGGTATTTGTTGATTGCTCTATTCTACTCTATACCAATCTCAATTTCCGATTATTTTTTTATTTCTTTGTTTTTCTTACCAAATTTGAGTGTGAAATTGGGATTGTTTTGCCTCTTTCCACGAATACACAGCTAGAGAACTTTTTTTTATCACTCTGTTGATAACGGCACCTCATTAGTCATGATAAATTTTATCATTCTCTTCATACGGGTTTGTTTCATTTTGATGGTTTGATTGGGTAGTCAAGTGAAATTAAACTCTTGGAGTTTGTTACTTTTAGTTTTAGACCATGAAATGTGATACTTTTTCGGGAAGAACTACAGTGTTCCATGCCGAGGTTGAGGTCGAAGCATAATGGCTGGTTTGTTGTGGAGCGTAGCAGCTGAGCCTGCTGGCAGTGGCTTATCTAACTTAAAATAGTATGAACAACAAGAGATAACCAAGACCAAGAGCGTAGTTTTCTTTTTGCCACGCAATGATTACTTTGTGATCTAAGCTTTTGGAAGCTTTCCTTCTCTACAGGACTTGTTCTGGATTAGATTGGCTGGTAATCTGGTGGTTTAGTTGTAGGGCAAAGACTCAGGAACTGTTGGAGAGTTTTGTGGACCAATGCTTGTGGTGCTCTCCTCTAAAACATTTGCTAGTAGCAAAGAGAGAGAAAATAAATAA

mRNA sequence

ATGGAATCGGAGGATGAGCTCGACATGCACGATGCTCATGACGACGACGATGACTCTGTTGACAATGAGGAGGATTTCTACAGTGGCGGCGACGACGATGCTGCTGGAATTGATAGCGACGATGCTGATGTCGGTGATTATGAGTTTGTTGATAATGATTCCGATGATTCCGACGACATGGTCTCCTATCGCCACCAGGGCAAAGACTCAGGAACTGTTGGAGAGTTTTGTGGACCAATGCTTGTGGTGCTCTCCTCTAAAACATTTGCTAGTAGCAAAGAGAGAGAAAATAAATAA

Coding sequence (CDS)

ATGGAATCGGAGGATGAGCTCGACATGCACGATGCTCATGACGACGACGATGACTCTGTTGACAATGAGGAGGATTTCTACAGTGGCGGCGACGACGATGCTGCTGGAATTGATAGCGACGATGCTGATGTCGGTGATTATGAGTTTGTTGATAATGATTCCGATGATTCCGACGACATGGTCTCCTATCGCCACCAGGGCAAAGACTCAGGAACTGTTGGAGAGTTTTGTGGACCAATGCTTGTGGTGCTCTCCTCTAAAACATTTGCTAGTAGCAAAGAGAGAGAAAATAAATAA

Protein sequence

MESEDELDMHDAHDDDDDSVDNEEDFYSGGDDDAAGIDSDDADVGDYEFVDNDSDDSDDMVSYRHQGKDSGTVGEFCGPMLVVLSSKTFASSKERENK*

Homology

[Close]

BLAST of Csa2G091800 vs. TrEMBL
Match: A0A0A0LMY6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G091800 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 2.0e-50
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1


Query: 1  MESEDELDMHDAHDDDDDSVDNEEDFYSGGDDDAAGIDSDDADVGDYEFVDNDSDDSDDM 60
          MESEDELDMHDAHDDDDDSVDNEEDFYSGGDDDAAGIDSDDADVGDYEFVDNDSDDSDDM
Sbjct: 1  MESEDELDMHDAHDDDDDSVDNEEDFYSGGDDDAAGIDSDDADVGDYEFVDNDSDDSDDM 60

Query: 61 VSYRHQGKDSGTVGEFCGPMLVVLSSKTFASSKERENK 99
          VSYRHQGKDSGTVGEFCGPMLVVLSSKTFASSKERENK
Sbjct: 61 VSYRHQGKDSGTVGEFCGPMLVVLSSKTFASSKERENK 98

[Close]

BLAST of Csa2G091800 vs. TrEMBL
Match: W9RV82_9ROSA (Putative E3 ubiquitin-protein ligase ARI8 OS=Morus notabilis GN=L484_003557 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 5.7e-21
Identity = 50/68 (73.53%), Postives = 60/68 (88.24%), Query Frame = 1


Query: 1  MESEDELDMHDAHDDDDDSVDNEEDFYSGGDDDAA--GIDSDDADVGDYEFVDNDSDDSD 60
          M+SEDE DMHDA+DD+DD   N++ FYSGGDDDAA  G+DSDDAD+ DYEF+DNDSDDSD
Sbjct: 1  MDSEDEFDMHDANDDEDD---NDDHFYSGGDDDAAAAGLDSDDADIADYEFIDNDSDDSD 60

Query: 61 DMVSYRHQ 67
          D+VS+RHQ
Sbjct: 61 DVVSHRHQ 65

[Close]

BLAST of Csa2G091800 vs. TrEMBL
Match: M5WKX8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003187mg PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 6.5e-17
Identity = 46/67 (68.66%), Postives = 56/67 (83.58%), Query Frame = 1


Query: 1  MESEDELDMHDAHDDDDDSVDNEEDFYSGGDDDAAG-IDSDDADVGDYEFVDNDSDDSDD 60
          MES+DE DM DA+DDDD    N+EDFYSGGDDDAA  +DSD+A V DYEF+DNDSDDS+D
Sbjct: 1  MESDDEFDMLDANDDDD----NDEDFYSGGDDDAAAAMDSDEAGVADYEFIDNDSDDSND 60

Query: 61 MVSYRHQ 67
          + S+R+Q
Sbjct: 61 VASHRYQ 63

[Close]

BLAST of Csa2G091800 vs. TrEMBL
Match: V4SSL3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012327mg PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.2e-16
Identity = 47/72 (65.28%), Postives = 54/72 (75.00%), Query Frame = 1


Query: 1  MESEDELDMHDAHDDDDDSVDNEEDFYSGGDDDAA---GIDSDDADVGDYEFVDNDSDDS 60
          MESEDE DM DA+   +     E+DFYSGGDDDAA     DSDDADV DYEF+DNDSDDS
Sbjct: 1  MESEDEFDMQDANASAE-----EDDFYSGGDDDAAPAYAFDSDDADVADYEFIDNDSDDS 60

Query: 61 DDMVSYRHQGKD 70
          DD+VS RHQ ++
Sbjct: 61 DDLVSNRHQRQE 67

[Close]

BLAST of Csa2G091800 vs. TrEMBL
Match: A0A067E226_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g007642mg PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 4.2e-16
Identity = 47/69 (68.12%), Postives = 52/69 (75.36%), Query Frame = 1


Query: 1  MESEDELDMHDAHDDDDDSVDNEEDFYSGGDDDAA---GIDSDDADVGDYEFVDNDSDDS 60
          MESEDE DM DA+   +     E+DFYSGGDDDAA     DSDDADV DYEF+DNDSDDS
Sbjct: 1  MESEDEFDMQDANASAE-----EDDFYSGGDDDAAPAYAFDSDDADVADYEFIDNDSDDS 60

Query: 61 DDMVSYRHQ 67
          DD+VS RHQ
Sbjct: 61 DDLVSNRHQ 64

[Close]

BLAST of Csa2G091800 vs. TAIR10
Match: AT1G44050.1 (AT1G44050.1 Cysteine/Histidine-rich C1 domain family protein)

HSP 1 Score: 51.6 bits (122), Expect = 3.2e-07
Identity = 28/54 (51.85%), Postives = 31/54 (57.41%), Query Frame = 1


Query: 7   LDMHDAHDDDDDSVDNEE-DFYSGGDDDAAGIDSDDADVGDYEFVDNDSDDSDD 60
           L MH+ HDDDDD+ D++  D    GDDD  G D DD +  D E  DND DD DD
Sbjct: 64  LKMHN-HDDDDDAEDDDNGDDKEDGDDDNKGDDGDDDNEDDNEDDDNDDDDDDD 116

[Close]

BLAST of Csa2G091800 vs. TAIR10
Match: AT1G65430.1 (AT1G65430.1 IBR domain-containing protein)

HSP 1 Score: 50.1 bits (118), Expect = 9.4e-07
Identity = 25/49 (51.02%), Postives = 34/49 (69.39%), Query Frame = 1


Query: 20 VDNEEDFYSGGDD--DAAGIDSDDADVGDYEFVDNDSDDSDDMVSYRHQ 67
          ++ ++DFYSG ++  D A  D DDAD G+YEFVD+ +DDSDD++  R Q
Sbjct: 1  MEADDDFYSGTENYSDYADSDEDDAD-GEYEFVDDAADDSDDLIFRRRQ 48

[Close]

BLAST of Csa2G091800 vs. TAIR10
Match: AT1G48400.1 (AT1G48400.1 F-box/RNI-like/FBD-like domains-containing protein)

HSP 1 Score: 47.4 bits (111), Expect = 6.1e-06
Identity = 32/105 (30.48%), Postives = 46/105 (43.81%), Query Frame = 1


Query: 3   SEDELDMHDAHDDDDDSVDNEEDFYSGGDDDAAGIDSDDADVGDYEFVDNDSDDSDDM-- 62
           S+D+ D  D  DDDDD  D+++D     DDD    D DD D GDY  V+  +    D+  
Sbjct: 284 SDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDGDYYIVEPKAPIFGDVTE 343

Query: 63  -------VSYRHQGKDSGTVGEFCGPMLVVLSSKTFASSKERENK 99
                  ++  H   DS  V  FC   + V ++    S +  ++K
Sbjct: 344 LLAAIRNITTLHLSPDSLEVFHFCCKSMPVFNNLLNLSIESNKDK 388

[Close]

BLAST of Csa2G091800 vs. NCBI nr
Match: gi|700206217|gb|KGN61336.1| (hypothetical protein Csa_2G091800 [Cucumis sativus])

HSP 1 Score: 206.1 bits (523), Expect = 2.9e-50
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1


Query: 1  MESEDELDMHDAHDDDDDSVDNEEDFYSGGDDDAAGIDSDDADVGDYEFVDNDSDDSDDM 60
          MESEDELDMHDAHDDDDDSVDNEEDFYSGGDDDAAGIDSDDADVGDYEFVDNDSDDSDDM
Sbjct: 1  MESEDELDMHDAHDDDDDSVDNEEDFYSGGDDDAAGIDSDDADVGDYEFVDNDSDDSDDM 60

Query: 61 VSYRHQGKDSGTVGEFCGPMLVVLSSKTFASSKERENK 99
          VSYRHQGKDSGTVGEFCGPMLVVLSSKTFASSKERENK
Sbjct: 61 VSYRHQGKDSGTVGEFCGPMLVVLSSKTFASSKERENK 98

[Close]

BLAST of Csa2G091800 vs. NCBI nr
Match: gi|449442245|ref|XP_004138892.1| (PREDICTED: probable E3 ubiquitin-protein ligase ARI8 isoform X1 [Cucumis sativus])

HSP 1 Score: 143.3 bits (360), Expect = 2.3e-31
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1


Query: 1  MESEDELDMHDAHDDDDDSVDNEEDFYSGGDDDAAGIDSDDADVGDYEFVDNDSDDSDDM 60
          MESEDELDMHDAHDDDDDSVDNEEDFYSGGDDDAAGIDSDDADVGDYEFVDNDSDDSDDM
Sbjct: 1  MESEDELDMHDAHDDDDDSVDNEEDFYSGGDDDAAGIDSDDADVGDYEFVDNDSDDSDDM 60

Query: 61 VSYRHQ 67
          VSYRHQ
Sbjct: 61 VSYRHQ 66

[Close]

BLAST of Csa2G091800 vs. NCBI nr
Match: gi|778668058|ref|XP_011649031.1| (PREDICTED: probable E3 ubiquitin-protein ligase ARI8 isoform X2 [Cucumis sativus])

HSP 1 Score: 143.3 bits (360), Expect = 2.3e-31
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1


Query: 1  MESEDELDMHDAHDDDDDSVDNEEDFYSGGDDDAAGIDSDDADVGDYEFVDNDSDDSDDM 60
          MESEDELDMHDAHDDDDDSVDNEEDFYSGGDDDAAGIDSDDADVGDYEFVDNDSDDSDDM
Sbjct: 1  MESEDELDMHDAHDDDDDSVDNEEDFYSGGDDDAAGIDSDDADVGDYEFVDNDSDDSDDM 60

Query: 61 VSYRHQ 67
          VSYRHQ
Sbjct: 61 VSYRHQ 66

[Close]

BLAST of Csa2G091800 vs. NCBI nr
Match: gi|659082302|ref|XP_008441770.1| (PREDICTED: probable E3 ubiquitin-protein ligase ARI8 isoform X2 [Cucumis melo])

HSP 1 Score: 143.3 bits (360), Expect = 2.3e-31
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1


Query: 1  MESEDELDMHDAHDDDDDSVDNEEDFYSGGDDDAAGIDSDDADVGDYEFVDNDSDDSDDM 60
          MESEDELDMHDAHDDDDDSVDNEEDFYSGGDDDAAGIDSDDADVGDYEFVDNDSDDSDDM
Sbjct: 1  MESEDELDMHDAHDDDDDSVDNEEDFYSGGDDDAAGIDSDDADVGDYEFVDNDSDDSDDM 60

Query: 61 VSYRHQ 67
          VSYRHQ
Sbjct: 61 VSYRHQ 66

[Close]

BLAST of Csa2G091800 vs. NCBI nr
Match: gi|659082300|ref|XP_008441769.1| (PREDICTED: probable E3 ubiquitin-protein ligase ARI8 isoform X1 [Cucumis melo])

HSP 1 Score: 143.3 bits (360), Expect = 2.3e-31
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1


Query: 1  MESEDELDMHDAHDDDDDSVDNEEDFYSGGDDDAAGIDSDDADVGDYEFVDNDSDDSDDM 60
          MESEDELDMHDAHDDDDDSVDNEEDFYSGGDDDAAGIDSDDADVGDYEFVDNDSDDSDDM
Sbjct: 1  MESEDELDMHDAHDDDDDSVDNEEDFYSGGDDDAAGIDSDDADVGDYEFVDNDSDDSDDM 60

Query: 61 VSYRHQ 67
          VSYRHQ
Sbjct: 61 VSYRHQ 66

The following BLAST results are available for this feature:

BLAST of Csa2G091800 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LMY6_CUCSA	2.0e-50	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G091800 PE=4 SV=1	[more]
W9RV82_9ROSA	5.7e-21	73.53	Putative E3 ubiquitin-protein ligase ARI8 OS=Morus notabilis GN=L484_003557 PE=4...	[more]
M5WKX8_PRUPE	6.5e-17	68.66	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003187mg PE=4 SV=1	[more]
V4SSL3_9ROSI	3.2e-16	65.28	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012327mg PE=4 SV=1	[more]
A0A067E226_CITSI	4.2e-16	68.12	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g007642mg PE=4 SV=1	[more]

BLAST of Csa2G091800 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G44050.1	3.2e-07	51.85	Cysteine/Histidine-rich C1 domain family protein	[more]
AT1G65430.1	9.4e-07	51.02	IBR domain-containing protein	[more]
AT1G48400.1	6.1e-06	30.48	F-box/RNI-like/FBD-like domains-containing protein	[more]

BLAST of Csa2G091800 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700206217\|gb\|KGN61336.1\|	2.9e-50	100.00	hypothetical protein Csa_2G091800 [Cucumis sativus]	[more]
gi\|449442245\|ref\|XP_004138892.1\|	2.3e-31	100.00	PREDICTED: probable E3 ubiquitin-protein ligase ARI8 isoform X1 [Cucumis sativus...	[more]
gi\|778668058\|ref\|XP_011649031.1\|	2.3e-31	100.00	PREDICTED: probable E3 ubiquitin-protein ligase ARI8 isoform X2 [Cucumis sativus...	[more]
gi\|659082302\|ref\|XP_008441770.1\|	2.3e-31	100.00	PREDICTED: probable E3 ubiquitin-protein ligase ARI8 isoform X2 [Cucumis melo]	[more]
gi\|659082300\|ref\|XP_008441769.1\|	2.3e-31	100.00	PREDICTED: probable E3 ubiquitin-protein ligase ARI8 isoform X1 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU116347	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa2G091800.1	Csa2G091800.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU116347	CU116347	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa2G091800	Cla001645	Watermelon (97103) v1	cuwmB158

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa2G091800	Melon (DHL92) v3.5.1	cumeB132
Csa2G091800	Melon (DHL92) v3.5.1	cumeB142
Csa2G091800	Watermelon (Charleston Gray)	cuwcgB103
Csa2G091800	Cucurbita pepo (Zucchini)	cpecuB098
Csa2G091800	Cucurbita pepo (Zucchini)	cpecuB811
Csa2G091800	Bottle gourd (USVL1VR-Ls)	culsiB098
Csa2G091800	Cucumber (Gy14) v2	cgybcuB056
Csa2G091800	Melon (DHL92) v3.6.1	cumedB129
Csa2G091800	Melon (DHL92) v3.6.1	cumedB135
Csa2G091800	Silver-seed gourd	carcuB0514
Csa2G091800	Watermelon (97103) v2	cuwmbB109
Csa2G091800	Wax gourd	cuwgoB140
Csa2G091800	Cucumber (Gy14) v1	cgycuB396
Csa2G091800	Cucurbita maxima (Rimu)	cmacuB165
Csa2G091800	Cucurbita maxima (Rimu)	cmacuB786
Csa2G091800	Cucurbita moschata (Rifu)	cmocuB150
Csa2G091800	Cucurbita moschata (Rifu)	cmocuB779
Csa2G091800	Cucurbita moschata (Rifu)	cmocuB787